Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p50950 Brassica napus HOM05D010491 ORTHO05D012559 0.0e+00 3931.7 2160 100.0
BolC6t40120H Brassica oleracea HOM05D010491 ORTHO05D012559 0.0e+00 3461.8 2024 95.7
A07p42390 Brassica napus HOM05D010491 ORTHO05D012559 0.0e+00 2945.2 2162 78.9
BraA07t31765Z Brassica rapa HOM05D010491 ORTHO05D012559 0.0e+00 2850.8 2169 76.9
Sp5g31880 Schrenkiella parvula HOM05D010491 ORTHO05D012559 2.8e-236 823.9 1730 40.9
CARHR070280 Cardamine hirsuta HOM05D010491 ORTHO05D012559 4.9e-180 637.1 2233 32.8
AT1G76740 Arabidopsis thaliana HOM05D010491 ORTHO05D012559 1.8e-174 618.6 2296 31.3
Aa31LG4G6810 Aethionema arabicum HOM05D010491 ORTHO05D012559 6.9e-134 483.8 2377 29.9
Thhalv10018017m.g Eutrema salsugineum HOM05D010491 ORTHO05D012559 2.9e-132 478.4 1332 36.3
AL2G36890 Arabidopsis lyrata HOM05D010491 ORTHO05D012559 4.1e-110 404.8 2261 27.5
BcaC08g45512 Brassica carinata HOM05D010491 ORTHO05D012559 2.0e-61 243.0 750 32.3
A07p28380 Brassica napus HOM05D010491 ORTHO05D012559 2.7e-61 242.7 833 32.8
BolC6t38310H Brassica oleracea HOM05D010491 ORTHO05D012559 2.7e-61 242.7 750 32.3
C06p31820 Brassica napus HOM05D010491 ORTHO05D012559 6.0e-61 241.5 750 32.3
BcaB02g07074 Brassica carinata HOM05D010491 ORTHO05D012559 1.7e-60 240.0 874 31.4
Sp5g31890 Schrenkiella parvula HOM05D010491 ORTHO05D012559 5.8e-56 224.9 436 40.1
BraA07t30474Z Brassica rapa HOM05D010491 ORTHO05D012559 7.6e-48 198.0 622 33.1
Carub.0002s2365 Capsella rubella HOM05D010491 ORTHO05D012559 2.9e-39 169.5 332 43.4
AT1G76840 Arabidopsis thaliana HOM05D010491 ORTHO05D012559 2.5e-19 103.2 186 41.9
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 2.6e-16 93.2 223 36.8
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 4.2e-14 85.9 276 32.2
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 2.1e-13 83.6 279 31.9
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 2.1e-13 83.6 279 31.9
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 4.6e-13 82.4 278 32.4
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 6.0e-13 82.0 279 32.3
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 4.3e-11 75.9 100 45.0
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 7.4e-11 75.1 101 44.6
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 7.4e-11 75.1 99 45.5
Nitab4.5_0001187g0020 Nicotiana tabacum HOM05D011323 ORTHO05D010674 1.3e-10 74.3 311 29.6
Oeu051274.3 Olea europaea HOM05D027784 ORTHO05D010674 1.3e-10 74.3 137 38.7
AUR62040588 Chenopodium quinoa HOM05D018884 ORTHO05D010674 3.7e-10 72.8 135 37.8
SGA_v2.0_scaffold108G30881 Striga asiatica HOM05D001241 ORTHO05D010674 4.8e-10 72.4 95 48.4
Nitab4.5_0001344g0010 Nicotiana tabacum HOM05D011323 ORTHO05D010674 8.2e-10 71.6 298 28.9
MD05G1029500 Malus domestica HOM05D012764 ORTHO05D017940 1.8e-09 70.5 83 49.4
VMungo0464G2099 Vigna mungo HOM05D028233 ORTHO05D012559 1.2e-08 67.8 46 71.7
Gorai.009G255200 Gossypium raimondii HOM05D013130 ORTHO05D022454 2.6e-08 66.6 259 31.3
Glyma.16G165600 Glycine max HOM05D028233 ORTHO05D015681 7.6e-08 65.1 46 67.4
Gohir.A05G244401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 7.6e-08 65.1 440 25.2
arahy.Tifrunner.gnm1.ann1.UU4M73 Arachis hypogaea HOM05D053442 ORTHO05D010674 1.0e-07 64.7 127 38.6
MSTRG.1096 Avicennia marina HOM05D027784 ORTHO05D010674 1.7e-07 63.9 359 24.5
Glyma.02G080700 Glycine max HOM05D028233 ORTHO05D015681 3.8e-07 62.8 46 76.1
PGR044G2651 Punica granatum HOM05D012764 ORTHO05D010674 3.8e-07 62.8 272 29.4
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 5.0e-07 62.4 101 40.6
Peaxi162Scf00079g00245 Petunia axillaris HOM05D011323 ORTHO05D010674 5.0e-07 62.4 301 28.6
EL10Ac1g01580 Beta vulgaris HOM05D018884 ORTHO05D010674 6.5e-07 62.0 98 42.9
Cfa018307 Carpinus fangiana HOM05D015223 ORTHO05D010674 8.5e-07 61.6 105 39.0
CiPaw.16G010100 Carya illinoinensis HOM05D015223 ORTHO05D010674 8.5e-07 61.6 101 42.6
Dinv25882 Davidia involucrata HOM05D016043 ORTHO05D010674 8.5e-07 61.6 65 52.3
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 8.5e-07 61.6 114 37.7
DCAR_001148 Daucus carota HOM05D033900 ORTHO05D010674 1.1e-06 61.2 133 34.6
RcHm_v2.0_Chr6g0274831 Rosa chinensis HOM05D012764 ORTHO05D010674 1.9e-06 60.5 121 39.7
HanXRQChr11g0343441 Helianthus annuus HOM05D011323 ORTHO05D010674 2.5e-06 60.1 112 33.9


User provided reference genes

Program Settings