Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1937.9 992 100.0
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1920.6 992 98.9
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1874.4 992 96.7
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1867.4 992 96.6
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1690.2 992 87.2
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1654.0 992 85.6
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1644.8 992 84.5
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1628.6 992 84.9
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1608.2 992 83.4
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1602.4 993 82.4
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1585.1 992 82.5
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1582.4 993 80.8
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1503.0 993 76.9
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1384.0 995 70.7
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1383.6 993 70.9
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1382.1 995 71.0
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1379.0 993 71.2
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1371.3 996 69.7
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1366.7 993 70.0
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1364.7 995 69.0
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1363.2 972 71.7
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1361.7 993 69.3
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1360.9 995 69.4
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1359.0 996 69.9
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1357.0 993 69.0
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1355.5 997 69.1
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1352.8 995 69.1
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1343.6 994 68.4
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1343.2 988 69.2
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1341.6 994 68.4
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1341.3 993 67.5
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1340.5 982 68.9
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1340.1 982 68.8
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1338.9 994 67.3
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1337.4 988 68.7
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1337.0 993 68.0
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1333.2 993 68.3
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1332.8 988 68.6
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1330.9 993 68.6
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1329.7 993 68.4
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1328.9 995 67.9
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1328.5 993 67.5
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1327.8 995 67.5
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1325.8 994 68.3
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1325.1 1006 66.8
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1323.9 994 67.8
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1322.4 994 67.2
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1322.0 988 68.0
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1319.7 997 66.5
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1318.9 1018 67.2
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1318.9 993 67.6
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1316.2 994 66.9
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1316.2 995 67.4
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1313.5 1075 63.8
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1312.4 965 69.0
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1308.9 994 67.9
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1307.4 971 68.2
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1306.2 995 67.4
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1306.2 995 66.1
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1305.8 993 68.1
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1305.8 994 68.2
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1305.8 994 66.6
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1305.0 996 67.3
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1303.9 994 67.0
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1302.0 993 66.3
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1294.6 993 67.8
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1291.9 994 66.7
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1288.1 993 66.5
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1286.6 993 66.5
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1286.6 993 66.3
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1286.2 1000 67.4
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1284.6 993 66.2
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1282.3 994 66.3
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1282.3 993 65.8
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1280.0 987 66.3
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1278.5 995 65.5
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1278.1 963 67.5
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1276.5 965 66.2
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1266.9 993 65.9
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1262.7 994 66.0
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1260.0 991 65.4
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1256.9 998 65.2
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1251.1 997 64.7
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1249.2 1006 63.7
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1246.9 994 64.3
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1243.8 964 65.9
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1238.8 982 64.9
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1238.8 982 64.9
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1238.4 932 68.3
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1233.8 988 64.5
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1224.9 898 68.7
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1219.1 994 64.3
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1218.8 996 63.5
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1214.1 1000 62.7
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1206.8 1026 61.9
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1197.2 949 66.0
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1178.3 965 63.4
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1162.5 973 60.3
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1157.1 993 61.4
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1106.7 994 57.0
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1098.2 864 65.7
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1095.5 914 63.7
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 6.5e-305 1050.8 1001 57.0
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 1.7e-276 956.4 914 56.7
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 1.4e-275 953.4 727 69.1
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 3.5e-274 948.7 995 50.8
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 1.7e-265 919.8 1003 50.6
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 3.9e-265 918.7 1000 47.8
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 2.5e-264 916.0 1003 50.3
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 6.1e-263 911.4 997 48.3
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 6.0e-258 894.8 1005 50.0
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 7.1e-251 871.3 844 55.6
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 4.0e-246 855.5 988 46.0
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 9.6e-240 834.3 608 68.9
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 8.7e-233 811.2 613 67.9
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 5.3e-230 802.0 809 52.3
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 7.6e-229 798.1 745 56.9
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.7e-228 797.0 600 67.8
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 1.0e-204 718.0 1085 39.0
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 4.2e-203 712.6 914 42.6
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 2.4e-182 643.7 428 73.6
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 3.9e-148 530.0 356 78.1
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 1.7e-124 451.4 1192 29.2
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 1.6e-117 428.3 314 70.1
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 1.7e-116 424.9 306 70.3
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 3.7e-82 310.8 265 60.0
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 3.7e-82 310.8 265 60.0
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 1.4e-78 298.9 1080 27.3
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 5.2e-52 210.7 241 47.7
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 1.8e-41 175.6 122 77.9
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 2.9e-34 151.8 146 59.6
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 2.9e-34 151.8 978 23.3
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 4.7e-29 134.4 145 56.6
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 1.9e-25 122.5 109 56.0
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 3.0e-23 115.2 87 72.4
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.9e-14 85.9 76 59.2
A02p18080 Brassica napus HOM05D005576 ORTHO05D041195 3.4e-11 75.1 45 84.4
BraA02t06855Z Brassica rapa HOM05D005576 ORTHO05D041195 3.4e-11 75.1 45 84.4


User provided reference genes

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