Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 5.2e-93 344.4 171 100.0
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 5.2e-93 344.4 171 100.0
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 2.2e-59 232.6 187 69.0
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 2.2e-59 232.6 187 69.0
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 2.2e-59 232.6 187 69.0
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 2.2e-59 232.6 187 69.0
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 4.9e-59 231.5 187 68.4
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 6.4e-59 231.1 187 68.4
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 6.4e-59 231.1 187 69.0
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 5.4e-58 228.0 187 67.9
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 7.8e-57 224.2 190 65.3
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 1.3e-56 223.4 190 64.7
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 3.0e-56 222.2 190 64.2
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 6.6e-56 221.1 191 63.9
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 6.6e-56 221.1 191 63.9
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 1.9e-55 219.5 187 65.2
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 4.3e-55 218.4 190 63.7
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 5.6e-55 218.0 190 63.2
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 9.5e-55 217.2 190 63.7
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.1e-54 216.1 190 62.1
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 6.2e-54 214.5 189 63.0
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.4e-53 213.4 187 63.1
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.8e-53 213.0 190 62.1
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 6.8e-53 211.1 190 61.6
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 5.8e-52 208.0 190 60.5
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 9.9e-52 207.2 202 60.4
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 2.9e-51 205.7 182 63.2
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 2.9e-51 205.7 182 63.2
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 4.9e-51 204.9 182 62.6
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 1.9e-50 203.0 190 57.9
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 5.4e-50 201.4 187 60.4
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 9.2e-50 200.7 187 58.3
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.7e-49 199.1 187 58.8
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 3.5e-49 198.7 189 57.7
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 7.8e-49 197.6 187 58.8
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 7.8e-49 197.6 187 58.8
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 7.8e-49 197.6 189 57.1
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 1.0e-48 197.2 189 57.7
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 1.3e-48 196.8 187 58.3
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 1.3e-48 196.8 187 58.3
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 1.3e-48 196.8 189 57.7
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 1.7e-48 196.4 187 58.3
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 1.7e-48 196.4 189 57.1
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 1.7e-48 196.4 189 55.6
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.7e-48 196.4 189 57.1
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 1.7e-48 196.4 190 57.4
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.3e-48 196.1 187 57.8
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 2.3e-48 196.1 193 54.9
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 3.0e-48 195.7 189 57.7
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 3.0e-48 195.7 189 56.6
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 3.0e-48 195.7 194 56.2
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 3.9e-48 195.3 190 56.8
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 3.9e-48 195.3 187 58.8
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 1.1e-47 193.7 189 56.6
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 1.5e-47 193.4 189 55.0
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.5e-47 193.4 189 56.6
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.9e-47 193.0 190 56.8
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.9e-47 193.0 188 55.3
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 1.9e-47 193.0 186 55.9
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 2.5e-47 192.6 189 56.1
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.5e-47 192.6 189 55.6
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.5e-47 192.6 189 55.6
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 2.5e-47 192.6 187 57.8
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 3.3e-47 192.2 189 56.1
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 3.3e-47 192.2 190 55.3
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 4.3e-47 191.8 189 56.1
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 4.3e-47 191.8 190 55.3
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 5.6e-47 191.4 190 55.8
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 5.6e-47 191.4 187 56.7
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 7.3e-47 191.0 190 56.8
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 9.6e-47 190.7 189 56.6
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 9.6e-47 190.7 188 54.8
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.2e-46 190.3 189 55.0
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 1.2e-46 190.3 187 57.2
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 1.2e-46 190.3 188 54.3
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 1.6e-46 189.9 189 55.6
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 1.6e-46 189.9 187 55.1
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.6e-46 189.9 189 55.6
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 1.6e-46 189.9 187 55.6
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 1.6e-46 189.9 193 55.4
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 1.6e-46 189.9 187 55.1
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 1.6e-46 189.9 187 55.1
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 2.1e-46 189.5 194 55.2
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 2.1e-46 189.5 190 55.8
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 2.1e-46 189.5 193 54.4
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 2.1e-46 189.5 193 54.9
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 2.1e-46 189.5 187 55.1
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 2.8e-46 189.1 187 55.1
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 2.8e-46 189.1 190 53.2
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 3.6e-46 188.7 190 55.3
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 3.6e-46 188.7 193 54.4
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 4.7e-46 188.3 187 54.5
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 4.7e-46 188.3 188 54.3
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 4.7e-46 188.3 187 55.6
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 6.2e-46 188.0 191 53.9
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 6.2e-46 188.0 190 54.7
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 1.1e-45 187.2 188 53.2
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 1.1e-45 187.2 189 54.0
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 1.1e-45 187.2 189 54.5
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.4e-45 186.8 188 53.7
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 1.4e-45 186.8 193 53.9
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 1.8e-45 186.4 193 52.3
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.8e-45 186.4 189 55.6
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 2.4e-45 186.0 187 55.1
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 2.4e-45 186.0 187 52.9
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 3.1e-45 185.7 187 52.4
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 3.1e-45 185.7 193 53.9
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 4.0e-45 185.3 190 53.2
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 4.0e-45 185.3 190 53.2
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 5.2e-45 184.9 189 52.9
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 5.2e-45 184.9 193 53.9
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 6.8e-45 184.5 189 52.4
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 8.9e-45 184.1 189 52.9
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 1.2e-44 183.7 191 52.4
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 1.2e-44 183.7 188 53.2
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.5e-44 183.3 190 52.6
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 2.6e-44 182.6 191 55.5
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 3.4e-44 182.2 193 52.3
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 4.4e-44 181.8 193 51.8
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 5.8e-44 181.4 193 51.3
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 9.9e-44 180.6 193 51.3
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 6.4e-43 177.9 190 51.1
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 2.4e-42 176.0 189 55.6
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 5.6e-39 164.9 233 42.9
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 9.6e-39 164.1 179 50.8
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 4.8e-38 161.8 151 58.9
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 8.1e-38 161.0 187 50.8
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 9.0e-37 157.5 165 52.7
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.5e-36 156.8 160 55.0
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.5e-36 156.8 167 53.9
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.5e-36 156.8 163 55.2
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 2.6e-36 156.0 161 55.9
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 9.9e-36 154.1 161 55.3
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.3e-35 153.7 115 69.6
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 2.2e-35 152.9 161 53.4
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 1.4e-34 150.2 129 61.2
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 2.3e-32 142.9 195 43.6
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 4.3e-31 138.7 187 40.1
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 9.0e-29 131.0 145 52.4
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 1.2e-28 130.6 187 44.9
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 7.6e-28 127.9 114 56.1
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 2.4e-26 122.9 95 71.6
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 3.3e-23 112.5 76 71.1
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 5.6e-23 111.7 155 40.0
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 8.1e-22 107.8 113 50.4
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 3.0e-16 89.4 122 43.4
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 2.8e-14 82.8 82 57.3
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.0e-11 74.3 88 50.0
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 6.1e-09 65.1 85 47.1
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 6.7e-08 61.6 168 29.8
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 8.7e-08 61.2 188 26.6
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 1.9e-07 60.1 54 51.9
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 3.3e-07 59.3 107 37.4


User provided reference genes

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