Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 4.8e-232 807.4 377 100.0
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 4.8e-232 807.4 377 100.0
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 9.0e-223 776.5 380 96.6
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 2.8e-216 755.0 382 94.5
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 6.9e-215 750.4 382 93.7
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 1.2e-195 686.4 381 84.0
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 8.8e-194 680.2 381 84.3
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 9.7e-193 676.8 380 83.9
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 1.1e-188 663.3 381 81.4
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 1.4e-188 662.9 381 81.1
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 1.4e-186 656.4 381 80.1
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 1.1e-183 646.7 400 76.0
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 7.2e-164 580.9 378 71.7
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 3.2e-151 538.9 381 66.7
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.1e-148 530.4 381 64.8
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 5.6e-148 528.1 380 64.7
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.2e-147 526.9 380 64.5
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 1.6e-147 526.6 382 64.4
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 2.9e-144 515.8 377 62.9
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 3.7e-144 515.4 380 62.6
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 2.4e-143 512.7 380 63.2
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 4.1e-143 511.9 382 62.8
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 1.2e-142 510.4 403 59.6
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 2.7e-142 509.2 381 62.5
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 1.3e-141 506.9 381 63.8
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 8.6e-141 504.2 380 61.3
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 1.9e-140 503.1 381 61.4
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.9e-140 503.1 380 62.4
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 3.3e-140 502.3 385 61.3
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 1.4e-138 496.9 365 64.9
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 1.4e-138 496.9 387 61.5
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 1.4e-138 496.9 380 60.8
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.8e-138 496.5 385 61.3
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 8.9e-138 494.2 385 60.8
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 8.9e-138 494.2 381 61.7
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 7.5e-137 491.1 377 61.8
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 4.9e-136 488.4 381 59.3
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 1.9e-135 486.5 381 59.6
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 4.1e-135 485.3 377 58.9
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 9.2e-135 484.2 381 59.1
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 2.1e-134 483.0 385 58.7
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 2.1e-134 483.0 385 59.7
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 4.6e-134 481.9 400 58.5
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 6.0e-134 481.5 380 61.1
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 7.8e-134 481.1 383 60.8
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 1.0e-133 480.7 381 60.6
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 3.9e-133 478.8 379 60.4
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 8.6e-133 477.6 407 54.5
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 2.5e-132 476.1 381 59.1
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 4.7e-131 471.9 395 58.0
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 4.7e-131 471.9 350 64.0
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 2.3e-130 469.5 381 60.1
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 1.5e-129 466.8 378 58.7
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 2.0e-129 466.5 381 57.7
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 2.6e-129 466.1 381 58.0
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 5.8e-129 464.9 380 57.9
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 7.6e-129 464.5 381 57.7
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 1.3e-128 463.8 381 57.5
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 1.1e-127 460.7 471 50.5
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 1.9e-127 459.9 379 58.0
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 2.1e-126 456.4 381 58.0
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 2.1e-126 456.4 364 57.7
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 4.6e-126 455.3 380 56.8
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 1.0e-125 454.1 381 57.0
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 3.3e-124 449.1 386 57.3
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 9.6e-124 447.6 382 56.3
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 1.1e-122 444.1 381 56.2
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 2.4e-122 443.0 377 55.4
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 2.6e-121 439.5 377 56.2
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 5.8e-121 438.3 380 55.3
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 1.3e-120 437.2 393 55.7
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 2.9e-120 436.0 380 54.5
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 2.4e-119 433.0 378 55.0
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 3.2e-119 432.6 363 58.1
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 5.4e-119 431.8 346 59.2
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 6.0e-118 428.3 424 50.2
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 1.0e-117 427.6 353 57.8
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 2.8e-115 419.5 377 52.5
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 2.9e-112 409.5 310 61.9
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 1.7e-104 383.6 322 56.8
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 2.9e-104 382.9 387 51.2
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 2.9e-104 382.9 352 54.5
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 4.9e-104 382.1 318 57.2
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 7.1e-103 378.3 338 54.4
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 2.1e-99 366.7 381 48.3
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 2.4e-98 363.2 393 46.1
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 7.1e-95 351.7 277 60.3
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 1.1e-92 344.4 371 44.7
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 2.5e-92 343.2 389 46.3
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 3.7e-91 339.3 285 57.5
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.6e-89 333.2 246 62.6
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 1.2e-86 324.3 304 52.3
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 2.8e-83 313.2 380 41.6
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 8.2e-83 311.6 261 58.6
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 1.4e-77 294.3 401 41.6
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 3.7e-75 286.2 354 43.2
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 1.8e-74 283.9 379 40.9
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 3.4e-73 279.6 379 40.6
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 3.7e-67 259.6 216 56.9
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 3.8e-64 249.6 310 43.5
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 1.6e-49 201.1 301 37.2
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 1.3e-40 171.4 368 30.2
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 1.1e-39 168.3 382 31.4
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 1.9e-39 167.5 368 30.2
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 5.6e-39 166.0 375 30.4
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 9.5e-39 165.2 375 29.9
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 9.5e-39 165.2 373 30.3
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 9.5e-39 165.2 375 31.2
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 9.5e-39 165.2 375 31.2
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 1.6e-38 164.5 366 31.1
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 1.6e-38 164.5 377 31.3
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 3.6e-38 163.3 365 31.5
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 3.6e-38 163.3 370 31.9
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 4.7e-38 162.9 374 31.3
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 4.7e-38 162.9 365 31.2
AUR62026503 Chenopodium quinoa HOM05D001404 ORTHO05D009009 6.1e-38 162.5 214 44.9
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 8.0e-38 162.2 360 30.8
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 1.0e-37 161.8 372 30.6
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 1.0e-37 161.8 373 30.6
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 1.4e-37 161.4 366 32.0
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 1.8e-37 161.0 366 32.0
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 2.3e-37 160.6 369 27.9
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 2.3e-37 160.6 367 31.9
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 2.3e-37 160.6 366 31.7
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 5.2e-37 159.5 369 28.5
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 5.2e-37 159.5 366 31.7
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 8.9e-37 158.7 367 28.3
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 8.9e-37 158.7 375 31.5
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 8.9e-37 158.7 371 28.3
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 1.2e-36 158.3 367 27.8
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 1.2e-36 158.3 367 27.8
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.2e-36 158.3 376 30.9
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 1.2e-36 158.3 376 30.9
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 1.2e-36 158.3 375 30.7
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 1.2e-36 158.3 373 31.6
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 2.0e-36 157.5 374 30.5
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 2.0e-36 157.5 378 31.2
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 2.6e-36 157.1 378 28.8
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 2.6e-36 157.1 375 30.4
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 3.4e-36 156.8 375 30.1
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 3.4e-36 156.8 371 30.2
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 7.5e-36 155.6 373 30.8
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 7.5e-36 155.6 375 30.4
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 7.5e-36 155.6 376 30.3
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 9.8e-36 155.2 376 30.6
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 1.7e-35 154.5 354 30.8
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 2.9e-35 153.7 381 30.2
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 2.9e-35 153.7 373 29.0
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 3.7e-35 153.3 366 30.3
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 4.9e-35 152.9 376 30.3
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 6.4e-35 152.5 149 47.0
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 6.4e-35 152.5 368 31.5
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 8.3e-35 152.1 375 30.1
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 1.1e-34 151.8 372 28.2
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 1.8e-34 151.0 145 53.8
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 3.2e-34 150.2 366 31.1
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 4.1e-34 149.8 369 30.4
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 5.9e-33 146.0 377 30.0
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 7.8e-33 145.6 379 29.3
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 2.3e-32 144.1 368 28.0
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 6.6e-32 142.5 366 27.6
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 3.6e-30 136.7 131 49.6
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 3.4e-28 130.2 368 25.3
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 5.0e-24 116.3 373 26.5
ATR0712G115 Amborella trichopoda HOM05D001404 ORTHO05D009009 8.6e-24 115.5 72 72.2
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 3.3e-23 113.6 86 64.0
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 3.3e-23 113.6 243 31.3
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 3.3e-23 113.6 125 45.6
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 7.3e-23 112.5 297 30.0
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 3.6e-22 110.2 132 41.7
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 6.2e-22 109.4 445 24.5
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 2.3e-21 107.5 126 42.9
TPR.G17205 Trifolium pratense HOM05D001404 ORTHO05D009009 4.4e-20 103.2 73 58.9
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 1.5e-15 88.2 64 59.4
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 1.5e-15 88.2 199 32.7
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 2.0e-12 77.8 188 28.7
HanXRQChr17g0570121 Helianthus annuus HOM05D001404 ORTHO05D009009 2.6e-12 77.4 88 43.2
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 1.7e-11 74.7 117 37.6
Medtr5g036455 Medicago truncatula HOM05D001404 ORTHO05D009009 4.9e-11 73.2 67 56.7
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 6.4e-11 72.8 74 45.9
C06p36300 Brassica napus HOM05D001404 ORTHO05D009009 1.6e-09 68.2 50 64.0
MELO3C012030.2 Cucumis melo HOM05D001404 ORTHO05D009009 3.3e-07 60.5 34 73.5


User provided reference genes

Program Settings