Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p34150 Brassica napus HOM05D003431 ORTHO05D014368 4.7e-71 271.2 145 100.0
BolC6t38529H Brassica oleracea HOM05D003431 ORTHO05D014368 4.6e-42 174.9 106 89.6
BcaC08g45659 Brassica carinata HOM05D003431 ORTHO05D014368 6.0e-26 121.3 66 92.4
BcaB03g12039 Brassica carinata HOM05D003431 ORTHO05D005152 1.0e-17 94.0 66 72.7
BcaB03g14023 Brassica carinata HOM05D003431 ORTHO05D005152 1.0e-17 94.0 66 72.7
BcaC05g26486 Brassica carinata HOM05D003431 ORTHO05D005152 1.0e-17 94.0 66 72.7
BcaC05g26690 Brassica carinata HOM05D003431 ORTHO05D005152 1.0e-17 94.0 66 72.7
A07p12440 Brassica napus HOM05D003431 ORTHO05D005152 1.0e-17 94.0 66 72.7
A09p39090 Brassica napus HOM05D003431 ORTHO05D005152 1.0e-17 94.0 66 72.7
C05p25340 Brassica napus HOM05D003431 ORTHO05D005152 1.0e-17 94.0 66 72.7
BraA07t29025Z Brassica rapa HOM05D003431 ORTHO05D005152 1.0e-17 94.0 66 72.7
BraA08t34627Z Brassica rapa HOM05D003431 ORTHO05D005152 1.0e-17 94.0 66 72.7
BraA09t39409Z Brassica rapa HOM05D003431 ORTHO05D005152 1.0e-17 94.0 66 72.7
BcaC06g35235 Brassica carinata HOM05D003431 ORTHO05D005152 3.0e-17 92.4 66 71.2
C07p18390 Brassica napus HOM05D003431 ORTHO05D005152 3.0e-17 92.4 66 71.2
Sp1g23030 Schrenkiella parvula HOM05D003431 ORTHO05D005152 3.0e-17 92.4 66 71.2
BolC5t31269H Brassica oleracea HOM05D003431 ORTHO05D005152 5.1e-17 91.7 66 71.2
BolC7t42349H Brassica oleracea HOM05D003431 ORTHO05D005152 6.7e-17 91.3 68 70.6
BcaC01g01674 Brassica carinata HOM05D003431 ORTHO05D005152 8.7e-17 90.9 66 71.2
A08p26810 Brassica napus HOM05D003431 ORTHO05D005152 8.7e-17 90.9 66 71.2
C03p73140 Brassica napus HOM05D003431 ORTHO05D005152 8.7e-17 90.9 66 71.2
BolC3t19610H Brassica oleracea HOM05D003431 ORTHO05D005152 8.7e-17 90.9 66 71.2
CARHR026300 Cardamine hirsuta HOM05D003431 ORTHO05D005152 1.5e-16 90.1 66 69.7
Aa31LG7G9280 Aethionema arabicum HOM05D003431 ORTHO05D005152 3.3e-16 89.0 66 69.7
AT1G25260 Arabidopsis thaliana HOM05D003431 ORTHO05D005152 7.4e-16 87.8 80 61.2
Thhalv10008680m.g Eutrema salsugineum HOM05D003431 ORTHO05D005152 9.7e-16 87.4 66 68.2
AL1G40100 Arabidopsis lyrata HOM05D003431 ORTHO05D005152 2.2e-15 86.3 66 68.2
Cpa.g.sc2.27 Carica papaya HOM05D003431 ORTHO05D005152 6.9e-14 81.3 112 42.9
Manes.07G013300 Manihot esculenta HOM05D003431 ORTHO05D005152 6.9e-14 81.3 66 60.6
GSVIVG01023018001 Vitis vinifera HOM05D003431 ORTHO05D005152 6.9e-14 81.3 66 60.6
CARHR057180 Cardamine hirsuta HOM05D003431 ORTHO05D014368 9.0e-14 80.9 63 71.4
TAR636G0765 Trochodendron aralioides HOM05D003431 ORTHO05D005152 9.0e-14 80.9 66 59.1
Atru.chr6.1030 Acer truncatum HOM05D003431 ORTHO05D005152 1.5e-13 80.1 66 62.1
Atru.chr6.1079 Acer truncatum HOM05D003431 ORTHO05D005152 1.5e-13 80.1 66 62.1
BcaC07g37686 Brassica carinata HOM05D003431 ORTHO05D032197 1.5e-13 80.1 88 55.7
QL02p098641 Quercus lobata HOM05D003431 ORTHO05D005152 2.0e-13 79.7 66 60.6
TAR633G0411 Trochodendron aralioides HOM05D003431 ORTHO05D005152 2.0e-13 79.7 66 57.6
MSTRG.16533 Avicennia marina HOM05D003431 ORTHO05D005152 5.9e-13 78.2 66 57.6
Actinidia39056 Actinidia chinensis HOM05D003431 ORTHO05D005152 7.7e-13 77.8 66 57.6
Haze_13054 Corylus avellana HOM05D003431 ORTHO05D005152 7.7e-13 77.8 66 59.1
Carub.0001s2531 Capsella rubella HOM05D003431 ORTHO05D005152 1.0e-12 77.4 60 65.0
MBI15_g28822_MAGBIO Magnolia biondii HOM05D003431 ORTHO05D005152 1.0e-12 77.4 66 59.1
Ciclev10002376m.g Citrus clementina HOM05D003431 ORTHO05D005152 1.7e-12 76.6 66 60.6
Lsat_1_v5_gn_7_77981 Lactuca sativa HOM05D003431 ORTHO05D005152 1.7e-12 76.6 66 56.1
MD08G1225200 Malus domestica HOM05D003431 ORTHO05D005152 2.2e-12 76.3 66 57.6
TWI23G0077 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 2.2e-12 76.3 66 59.1
CANSAT11G1865 Cannabis sativa HOM05D003431 ORTHO05D005152 2.9e-12 75.9 66 59.1
Migut.B00667 Erythranthe guttata HOM05D003431 ORTHO05D005152 2.9e-12 75.9 66 59.1
Cfa014508 Carpinus fangiana HOM05D003431 ORTHO05D005152 3.8e-12 75.5 66 57.6
Nn2g13208 Nelumbo nucifera HOM05D003431 ORTHO05D005152 3.8e-12 75.5 66 57.6
Peaxi162Scf00011g00014 Petunia axillaris HOM05D003431 ORTHO05D005152 3.8e-12 75.5 66 56.1
TWI14G0641 Tripterygium wilfordii HOM05D003431 ORTHO05D005152 3.8e-12 75.5 66 57.6
Aqoxy4G02442 Aquilegia oxysepala HOM05D003431 ORTHO05D005152 5.0e-12 75.1 66 56.1
Manes.10G132200 Manihot esculenta HOM05D003431 ORTHO05D005152 5.0e-12 75.1 66 57.6
MD15G1418800 Malus domestica HOM05D003431 ORTHO05D005152 6.5e-12 74.7 66 56.1
Oeu000195.1 Olea europaea HOM05D003431 ORTHO05D005152 6.5e-12 74.7 66 57.6
SalBow6G0908 Salvia bowleyana HOM05D003431 ORTHO05D005152 6.5e-12 74.7 66 54.5
BolC5t29949H Brassica oleracea HOM05D003431 ORTHO05D005152 8.5e-12 74.3 76 59.2
Duzib132G0664 Durio zibethinus HOM05D003431 ORTHO05D005152 8.5e-12 74.3 66 54.5
Sc11g0006640 Simmondsia chinensis HOM05D003431 ORTHO05D005152 8.5e-12 74.3 66 57.6
THA.LOC104807949 Tarenaya hassleriana HOM05D003431 ORTHO05D005152 8.5e-12 74.3 66 57.6
Thecc.02G041300 Theobroma cacao HOM05D003431 ORTHO05D005152 8.5e-12 74.3 66 56.1
CiPaw.05G042700 Carya illinoinensis HOM05D003431 ORTHO05D005152 1.1e-11 73.9 66 56.1
RcHm_v2.0_Chr7g0224251 Rosa chinensis HOM05D003431 ORTHO05D005152 1.1e-11 73.9 66 56.1
Potri.001G460100 Populus trichocarpa HOM05D003431 ORTHO05D005152 1.4e-11 73.6 66 56.1
Prupe.1G562900 Prunus persica HOM05D003431 ORTHO05D005152 1.4e-11 73.6 66 56.1
Sabra16G0311800 Salix brachista HOM05D003431 ORTHO05D005152 1.4e-11 73.6 66 56.1
unitig_22.g6119 Utricularia gibba HOM05D003431 ORTHO05D005152 1.4e-11 73.6 66 56.1
AagrBONN_evm.TU.Sc2ySwM_369.396 Anthoceros agrestis HOM05D003431 ORTHO05D005152 1.9e-11 73.2 66 54.5
Dinv24261 Davidia involucrata HOM05D003431 ORTHO05D005152 1.9e-11 73.2 66 54.5
Hma1.2p1_0557F.1_g178330 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 1.9e-11 73.2 66 57.6
Hma1.2p1_0557F.1_g178340 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 1.9e-11 73.2 66 57.6
Hma1.2p1_2850F.1_g329406 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 1.9e-11 73.2 66 57.6
Hma1.2p1_0217F.1_g091920 Hydrangea macrophylla HOM05D003431 ORTHO05D005152 2.5e-11 72.8 63 57.1
BraA04t16596Z Brassica rapa HOM05D003431 ORTHO05D014368 3.2e-11 72.4 40 90.0
CiPaw.06G149000 Carya illinoinensis HOM05D003431 ORTHO05D005152 3.2e-11 72.4 66 56.1
DCAR_013995 Daucus carota HOM05D003431 ORTHO05D005152 3.2e-11 72.4 66 54.5
ECA236G3864 Erigeron canadensis HOM05D003431 ORTHO05D005152 3.2e-11 72.4 66 54.5
Lj9A308T36 Lonicera japonica HOM05D003431 ORTHO05D005152 3.2e-11 72.4 66 56.1
Cc02_g22270 Coffea canephora HOM05D003431 ORTHO05D005152 4.2e-11 72.0 112 39.3
FvH4_5g30060 Fragaria vesca HOM05D003431 ORTHO05D005152 4.2e-11 72.0 66 54.5
FAN04G1904 Fragaria x ananassa HOM05D003431 ORTHO05D005152 4.2e-11 72.0 66 54.5
FAN08G2387 Fragaria x ananassa HOM05D003431 ORTHO05D005152 4.2e-11 72.0 66 54.5
FAN13G1098 Fragaria x ananassa HOM05D003431 ORTHO05D005152 4.2e-11 72.0 66 54.5
FAN18G1423 Fragaria x ananassa HOM05D003431 ORTHO05D005152 4.2e-11 72.0 66 54.5
Sabra11G0143500 Salix brachista HOM05D003431 ORTHO05D005152 4.2e-11 72.0 66 54.5
Ca_00090_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 5.5e-11 71.6 66 53.0
Ca_29929_v3 Cicer arietinum L. HOM05D003431 ORTHO05D005152 5.5e-11 71.6 66 53.0
ATR0174G027 Amborella trichopoda HOM05D003431 ORTHO05D005152 7.2e-11 71.2 66 53.0
ClCG02G000650 Citrullus lanatus HOM05D003431 ORTHO05D005152 7.2e-11 71.2 66 56.1
Oeu026055.1 Olea europaea HOM05D003431 ORTHO05D005152 7.2e-11 71.2 66 53.0
Psat1g220040 Pisum sativum HOM05D003431 ORTHO05D005152 7.2e-11 71.2 66 53.0
Potri.011G156300 Populus trichocarpa HOM05D003431 ORTHO05D005152 7.2e-11 71.2 66 54.5
arahy.Tifrunner.gnm1.ann1.I5HCXG Arachis hypogaea HOM05D003431 ORTHO05D005152 9.4e-11 70.9 66 53.0
arahy.Tifrunner.gnm1.ann1.N8P1ZJ Arachis hypogaea HOM05D003431 ORTHO05D005152 9.4e-11 70.9 66 53.0
Solyc01g104470.3 Solanum lycopersicum HOM05D003431 ORTHO05D005152 9.4e-11 70.9 112 38.4
Sopen01g046970 Solanum pennellii HOM05D003431 ORTHO05D005152 9.4e-11 70.9 112 38.4
PGSC0003DMG400023745 Solanum tuberosum HOM05D003431 ORTHO05D005152 9.4e-11 70.9 112 38.4
SGA_v2.0_scaffold1G00326 Striga asiatica HOM05D003431 ORTHO05D005152 9.4e-11 70.9 66 51.5
Zm00001eb163260 Zea mays HOM05D003431 ORTHO05D005152 9.4e-11 70.9 66 51.5
BcaB08g35512 Brassica carinata HOM05D003431 ORTHO05D014368 1.2e-10 70.5 40 87.5
CsaV3_2G018120 Cucumis sativus L. HOM05D003431 ORTHO05D005152 1.2e-10 70.5 66 56.1
Glyma.08G184300 Glycine max HOM05D003431 ORTHO05D005152 1.2e-10 70.5 66 53.0
Gohir.A01G176900 Gossypium hirsutum HOM05D003431 ORTHO05D005152 1.2e-10 70.5 66 51.5
Gohir.D01G167700 Gossypium hirsutum HOM05D003431 ORTHO05D005152 1.2e-10 70.5 66 51.5
Gorai.002G208400 Gossypium raimondii HOM05D003431 ORTHO05D005152 1.2e-10 70.5 66 51.5
PSO170G4153 Papaver somniferum HOM05D003431 ORTHO05D005152 1.2e-10 70.5 66 51.5
SHI16687 Sapria himalayana HOM05D003431 ORTHO05D005152 1.2e-10 70.5 64 54.7
Sed0002836 Sechium edule HOM05D003431 ORTHO05D005152 1.2e-10 70.5 66 54.5
Sed0006026 Sechium edule HOM05D003431 ORTHO05D005152 1.2e-10 70.5 66 54.5
HPP92_015419 Vanilla planifolia HOM05D003431 ORTHO05D005152 1.2e-10 70.5 60 61.7
HPP92_026977 Vanilla planifolia HOM05D003431 ORTHO05D005152 1.2e-10 70.5 60 61.7
CSS0006665 Camellia sinensis var. sinensis HOM05D003431 ORTHO05D005152 2.1e-10 69.7 66 51.5
Duzib248G1379 Durio zibethinus HOM05D003431 ORTHO05D005152 2.1e-10 69.7 66 53.0
Glyma.15G048200 Glycine max HOM05D003431 ORTHO05D005152 2.1e-10 69.7 66 53.0
HanXRQChr01g0021831 Helianthus annuus HOM05D003431 ORTHO05D005152 2.1e-10 69.7 66 53.0
Zm00001eb094240 Zea mays HOM05D003431 ORTHO05D005152 2.1e-10 69.7 66 51.5
HanXRQChr03g0066511 Helianthus annuus HOM05D003431 ORTHO05D005152 2.7e-10 69.3 66 51.5
Medtr2g007780 Medicago truncatula HOM05D003431 ORTHO05D005152 2.7e-10 69.3 66 53.0
PSO339G0293 Papaver somniferum HOM05D003431 ORTHO05D005152 2.7e-10 69.3 66 50.0
PSO801G0645 Papaver somniferum HOM05D003431 ORTHO05D005152 2.7e-10 69.3 66 50.0
VMungo0540G2199 Vigna mungo HOM05D003431 ORTHO05D005152 2.7e-10 69.3 66 53.0
Lj6g0011327 Lotus japonicus HOM05D003431 ORTHO05D005152 3.6e-10 68.9 66 51.5
vmacro01777 Vaccinium macrocarpon HOM05D003431 ORTHO05D005152 3.6e-10 68.9 66 53.0
CDE12G0598 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 4.6e-10 68.6 66 50.0
Os12g0105200 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 4.6e-10 68.6 66 51.5
Phvul.006G212200 Phaseolus vulgaris HOM05D003431 ORTHO05D005152 6.1e-10 68.2 66 51.5
Os11g0105400 Oryza sativa ssp. japonica HOM05D003431 ORTHO05D005152 7.9e-10 67.8 66 51.5
Zm00001eb026620 Zea mays HOM05D003431 ORTHO05D005152 7.9e-10 67.8 66 50.0
CDE06G1320 Ceratophyllum demersum HOM05D003431 ORTHO05D005152 1.0e-09 67.4 66 51.5
Eucgr.I02710 Eucalyptus grandis HOM05D003431 ORTHO05D005152 1.0e-09 67.4 66 51.5
Nitab4.5_0010140g0020 Nicotiana tabacum HOM05D003431 ORTHO05D005152 1.0e-09 67.4 66 50.0
PSO017G6291 Papaver somniferum HOM05D003431 ORTHO05D005152 1.4e-09 67.0 66 50.0
Hund24426 Selenicereus undatus HOM05D003431 ORTHO05D005152 2.3e-09 66.2 66 51.5
Zm00001eb078820 Zea mays HOM05D003431 ORTHO05D005152 2.3e-09 66.2 66 48.5
Rhsim11G0131700 Rhododendron simsii HOM05D003431 ORTHO05D005152 3.9e-09 65.5 66 47.0
Lalb_Chr18g0060821 Lupinus albus HOM05D003431 ORTHO05D005152 5.1e-09 65.1 66 48.5
SMO367G0584 Selaginella moellendorffii HOM05D003431 ORTHO05D005152 5.1e-09 65.1 66 50.0
Lsat_1_v5_gn_9_116360 Lactuca sativa HOM05D003431 ORTHO05D005152 6.7e-09 64.7 66 51.5
TPR.G39937 Trifolium pratense HOM05D003431 ORTHO05D005152 6.7e-09 64.7 66 48.5
BcaC05g27507 Brassica carinata HOM05D003431 ORTHO05D014368 2.0e-08 63.2 34 88.2
PGR142G4046 Punica granatum HOM05D003431 ORTHO05D005152 3.3e-08 62.4 112 36.6
AUR62020868 Chenopodium quinoa HOM05D003431 ORTHO05D005152 5.7e-08 61.6 66 47.0
Mapoly0015s0017 Marchantia polymorpha HOM05D003431 ORTHO05D005152 5.7e-08 61.6 66 47.0
EL10Ac3g07449 Beta vulgaris HOM05D003431 ORTHO05D005152 7.4e-08 61.2 66 48.5
AUR62018551 Chenopodium quinoa HOM05D003431 ORTHO05D005152 7.4e-08 61.2 66 47.0
Pp3c11_25500 Physcomitrium patens HOM05D003431 ORTHO05D005152 4.8e-07 58.5 66 45.5
C05p02190 Brassica napus HOM05D003431 ORTHO05D014368 6.3e-07 58.2 40 75.0
BolC5t28997H Brassica oleracea HOM05D003431 ORTHO05D014368 6.3e-07 58.2 40 75.0
Pp3s128_30 Physcomitrium patens HOM05D003431 ORTHO05D005152 1.1e-06 57.4 66 45.5
TAR636G2181 Trochodendron aralioides HOM05D003431 ORTHO05D005152 9.1e-06 54.3 47 55.3


User provided reference genes

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