Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p06540 Brassica napus HOM05D001937 ORTHO05D003828 5.9e-61 237.3 113 100.0
BolC6t35766H Brassica oleracea HOM05D001937 ORTHO05D003828 5.9e-61 237.3 113 100.0
A06p02530 Brassica napus HOM05D001937 ORTHO05D003828 2.5e-43 178.7 150 66.0
A08p09140 Brassica napus HOM05D001937 ORTHO05D003828 2.5e-43 178.7 154 63.6
BraA08t32916Z Brassica rapa HOM05D001937 ORTHO05D003828 2.5e-43 178.7 154 63.6
BcaC07g37602 Brassica carinata HOM05D001937 ORTHO05D003828 7.2e-43 177.2 154 63.0
BolC8t47960H Brassica oleracea HOM05D001937 ORTHO05D003828 4.7e-42 174.5 152 62.5
BcaB04g17964 Brassica carinata HOM05D001937 ORTHO05D003828 6.8e-41 170.6 164 58.5
BcaC08g43307 Brassica carinata HOM05D001937 ORTHO05D003828 3.8e-36 154.8 82 89.0
Sp1g28210 Schrenkiella parvula HOM05D001937 ORTHO05D003828 1.6e-34 149.4 159 54.7
Thhalv10006532m.g Eutrema salsugineum HOM05D001937 ORTHO05D003828 3.6e-34 148.3 159 54.1
AT1G32750 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 4.7e-34 147.9 159 54.7
AL1G47030 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 1.4e-33 146.4 159 54.1
Carub.0001s3108 Capsella rubella HOM05D001937 ORTHO05D003828 1.2e-32 143.3 158 53.2
BraA06t23460Z Brassica rapa HOM05D001937 ORTHO05D003828 2.6e-32 142.1 82 84.1
CARHR032130 Cardamine hirsuta HOM05D001937 ORTHO05D003828 3.7e-31 138.3 159 51.6
Aa31LG2G13230 Aethionema arabicum HOM05D001937 ORTHO05D003828 6.6e-28 127.5 159 47.8
THA.LOC104811101 Tarenaya hassleriana HOM05D001937 ORTHO05D003828 2.8e-26 122.1 159 44.7
Sp3g17140 Schrenkiella parvula HOM05D001937 ORTHO05D003828 3.0e-25 118.6 160 45.6
A01p35430 Brassica napus HOM05D001937 ORTHO05D003828 4.4e-24 114.8 159 45.9
BraA01t03625Z Brassica rapa HOM05D001937 ORTHO05D003828 9.8e-24 113.6 159 45.3
Duzib212G0078 Durio zibethinus HOM05D001937 ORTHO05D003828 1.7e-23 112.8 80 66.2
Gorai.011G137400 Gossypium raimondii HOM05D001937 ORTHO05D003828 3.7e-23 111.7 74 70.3
BcaC09g48870 Brassica carinata HOM05D001937 ORTHO05D003828 3.2e-22 108.6 159 43.4
C01p44990 Brassica napus HOM05D001937 ORTHO05D003828 3.2e-22 108.6 159 43.4
BolC1t04467H Brassica oleracea HOM05D001937 ORTHO05D003828 3.2e-22 108.6 159 43.4
Gohir.A10G142200 Gossypium hirsutum HOM05D001937 ORTHO05D003828 4.1e-22 108.2 74 68.9
AT3G19040 Arabidopsis thaliana HOM05D001937 ORTHO05D003828 5.4e-22 107.8 159 42.1
AL3G32430 Arabidopsis lyrata HOM05D001937 ORTHO05D003828 7.0e-22 107.5 153 43.1
Manes.07G036600 Manihot esculenta HOM05D001937 ORTHO05D003828 7.0e-22 107.5 80 63.8
Thecc.04G168700 Theobroma cacao HOM05D001937 ORTHO05D003828 7.0e-22 107.5 80 61.2
Aqoxy4G02410 Aquilegia oxysepala HOM05D001937 ORTHO05D003828 9.2e-22 107.1 82 62.2
BcaB04g20722 Brassica carinata HOM05D001937 ORTHO05D003828 2.0e-21 105.9 160 44.4
EL10Ac3g06089 Beta vulgaris HOM05D001937 ORTHO05D003828 2.7e-21 105.5 80 62.5
Nitab4.5_0005574g0040 Nicotiana tabacum HOM05D001937 ORTHO05D003828 4.6e-21 104.8 81 64.2
Sc25g0001620 Simmondsia chinensis HOM05D001937 ORTHO05D003828 5.9e-21 104.4 80 61.2
TAR374G0100 Trochodendron aralioides HOM05D001937 ORTHO05D003828 7.8e-21 104.0 80 62.5
TAR374G1188 Trochodendron aralioides HOM05D001937 ORTHO05D003828 7.8e-21 104.0 80 62.5
CAN.G584.7 Capsicum annuum HOM05D001937 ORTHO05D003828 1.3e-20 103.2 79 64.6
Cpa.g.sc177.20 Carica papaya HOM05D001937 ORTHO05D003828 1.3e-20 103.2 80 61.2
SGA_v2.0_scaffold83G26356 Striga asiatica HOM05D001937 ORTHO05D003828 1.3e-20 103.2 80 63.8
ATR1120G087 Amborella trichopoda HOM05D001937 ORTHO05D003828 1.7e-20 102.8 80 63.8
Potri.007G113300 Populus trichocarpa HOM05D001937 ORTHO05D003828 1.7e-20 102.8 75 65.3
Prupe.1G559000 Prunus persica HOM05D001937 ORTHO05D003828 1.7e-20 102.8 80 61.2
AUR62023793 Chenopodium quinoa HOM05D001937 ORTHO05D003828 2.3e-20 102.4 75 62.7
CANSAT11G1347 Cannabis sativa HOM05D001937 ORTHO05D003828 3.0e-20 102.1 80 58.8
PGR042G3669 Punica granatum HOM05D001937 ORTHO05D003828 3.0e-20 102.1 80 58.8
Sabra07G0092600 Salix brachista HOM05D001937 ORTHO05D003828 3.0e-20 102.1 74 66.2
GSVIVG01020528001 Vitis vinifera HOM05D001937 ORTHO05D003828 3.0e-20 102.1 80 62.5
AUR62002404 Chenopodium quinoa HOM05D001937 ORTHO05D003828 3.9e-20 101.7 75 64.0
COL.COLO4_05351 Corchorus olitorius HOM05D001937 ORTHO05D003828 3.9e-20 101.7 76 61.8
MD04G1047300 Malus domestica HOM05D001937 ORTHO05D003828 3.9e-20 101.7 80 60.0
RcHm_v2.0_Chr3g0492481 Rosa chinensis HOM05D001937 ORTHO05D003828 5.0e-20 101.3 80 61.2
Dinv24157 Davidia involucrata HOM05D001937 ORTHO05D003828 8.6e-20 100.5 80 60.0
Atru.chr3.3789 Acer truncatum HOM05D001937 ORTHO05D003828 1.1e-19 100.1 75 62.7
CiPaw.05G030600 Carya illinoinensis HOM05D001937 ORTHO05D003828 1.1e-19 100.1 80 60.0
Nitab4.5_0000244g0410 Nicotiana tabacum HOM05D001937 ORTHO05D003828 1.1e-19 100.1 81 63.0
Peaxi162Scf00610g00377 Petunia axillaris HOM05D001937 ORTHO05D003828 1.1e-19 100.1 75 66.7
Sopen07g002920 Solanum pennellii HOM05D001937 ORTHO05D003828 1.1e-19 100.1 78 64.1
CSS0032005 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 1.5e-19 99.8 80 58.8
CSS0037154 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D003828 1.5e-19 99.8 80 58.8
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 1.5e-19 99.8 79 59.5
Haze_10549 Corylus avellana HOM05D001937 ORTHO05D007024 1.5e-19 99.8 79 59.5
FAN23G0892 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.5e-19 99.8 80 61.2
FAN26G2897 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.5e-19 99.8 80 61.2
Lj2C174G11 Lonicera japonica HOM05D001937 ORTHO05D003828 1.5e-19 99.8 80 58.8
Potri.017G047600 Populus trichocarpa HOM05D001937 ORTHO05D003828 1.5e-19 99.8 79 59.5
vmacro19954 Vaccinium macrocarpon HOM05D001937 ORTHO05D003828 1.5e-19 99.8 75 62.7
FAN19G2543 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.9e-19 99.4 80 61.2
Rhsim05G0102300 Rhododendron simsii HOM05D001937 ORTHO05D003828 1.9e-19 99.4 75 62.7
unitig_46.g18832 Utricularia gibba HOM05D001937 ORTHO05D003828 1.9e-19 99.4 75 64.0
Ciclev10004125m.g Citrus clementina HOM05D001937 ORTHO05D003828 2.5e-19 99.0 79 58.2
PSO675G8698 Papaver somniferum HOM05D001937 ORTHO05D003828 2.5e-19 99.0 76 60.5
Eucgr.I02627 Eucalyptus grandis HOM05D001937 ORTHO05D003828 3.3e-19 98.6 80 58.8
Sabra17G0032100 Salix brachista HOM05D001937 ORTHO05D003828 3.3e-19 98.6 79 59.5
CARHR094460 Cardamine hirsuta HOM05D001937 ORTHO05D003828 4.3e-19 98.2 80 62.5
Glyma.04G123500 Glycine max HOM05D001937 ORTHO05D003828 4.3e-19 98.2 80 57.5
Glyma.09G215000 Glycine max HOM05D001937 ORTHO05D003828 4.3e-19 98.2 80 57.5
Hund12383 Selenicereus undatus HOM05D001937 ORTHO05D003828 4.3e-19 98.2 74 63.5
FAN28G0964 Fragaria x ananassa HOM05D001937 ORTHO05D003828 5.6e-19 97.8 80 60.0
Lsat_1_v5_gn_6_102941 Lactuca sativa HOM05D001937 ORTHO05D003828 5.6e-19 97.8 78 60.3
ClCG09G008530 Citrullus lanatus HOM05D001937 ORTHO05D003828 7.3e-19 97.4 80 57.5
Oeu029676.1 Olea europaea HOM05D001937 ORTHO05D003828 7.3e-19 97.4 80 57.5
arahy.Tifrunner.gnm1.ann1.4559ZH Arachis hypogaea HOM05D001937 ORTHO05D003828 9.5e-19 97.1 80 57.5
arahy.Tifrunner.gnm1.ann1.9SH8TS Arachis hypogaea HOM05D001937 ORTHO05D003828 9.5e-19 97.1 80 57.5
Medtr5g026660 Medicago truncatula HOM05D001937 ORTHO05D003828 9.5e-19 97.1 80 57.5
CDE08G1500 Ceratophyllum demersum HOM05D001937 ORTHO05D003828 1.2e-18 96.7 80 61.2
Ca_25089_v3 Cicer arietinum L. HOM05D001937 ORTHO05D003828 1.2e-18 96.7 80 57.5
Ciclev10004140m.g Citrus clementina HOM05D001937 ORTHO05D003828 1.2e-18 96.7 79 57.0
MELO3C021095.2 Cucumis melo HOM05D001937 ORTHO05D003828 1.2e-18 96.7 80 57.5
CsaV3_7G026510 Cucumis sativus L. HOM05D001937 ORTHO05D003828 1.2e-18 96.7 80 57.5
Nn1g09835 Nelumbo nucifera HOM05D001937 ORTHO05D003828 1.2e-18 96.7 79 60.8
HPP92_017202 Vanilla planifolia HOM05D001937 ORTHO05D003828 1.2e-18 96.7 80 61.2
VMungo1215G1229 Vigna mungo HOM05D001937 ORTHO05D003828 1.2e-18 96.7 80 57.5
Phvul.002G127400 Phaseolus vulgaris HOM05D001937 ORTHO05D003828 1.6e-18 96.3 80 57.5
Cc02_g20980 Coffea canephora HOM05D001937 ORTHO05D003828 2.8e-18 95.5 80 57.5
Psat2g142560 Pisum sativum HOM05D001937 ORTHO05D003828 2.8e-18 95.5 80 57.5
Lj2g0019889 Lotus japonicus HOM05D001937 ORTHO05D003828 4.7e-18 94.7 80 56.2
Lalb_Chr05g0215381 Lupinus albus HOM05D001937 ORTHO05D003828 4.7e-18 94.7 80 56.2
TPR.G17275 Trifolium pratense HOM05D001937 ORTHO05D003828 4.7e-18 94.7 80 55.0
Actinidia28033 Actinidia chinensis HOM05D001937 ORTHO05D003828 6.2e-18 94.4 71 66.2
ECA246G2336 Erigeron canadensis HOM05D001937 ORTHO05D003828 1.4e-17 93.2 76 57.9
Nn2g11723 Nelumbo nucifera HOM05D001937 ORTHO05D003828 1.4e-17 93.2 79 58.2
TWI23G0701 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 2.3e-17 92.4 79 57.0
Atru.chr8.1124 Acer truncatum HOM05D001937 ORTHO05D003828 3.1e-17 92.0 73 60.3
DCAR_008727 Daucus carota HOM05D001937 ORTHO05D003828 4.0e-17 91.7 76 56.6
HanXRQChr05g0162901 Helianthus annuus HOM05D001937 ORTHO05D003828 8.9e-17 90.5 78 57.7
HanXRQChr06g0170531 Helianthus annuus HOM05D001937 ORTHO05D003828 8.9e-17 90.5 78 57.7
Os06g0645700 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D003828 1.2e-16 90.1 68 66.2
Zm00001eb386900 Zea mays HOM05D001937 ORTHO05D003828 1.5e-16 89.7 80 57.5
TWI14G0424 Tripterygium wilfordii HOM05D001937 ORTHO05D003828 2.6e-16 89.0 79 57.0
PSO782G5216 Papaver somniferum HOM05D001937 ORTHO05D003828 3.4e-16 88.6 80 53.8
DCAR_019148 Daucus carota HOM05D001937 ORTHO05D003828 5.8e-16 87.8 76 55.3
PSO063G3818 Papaver somniferum HOM05D001937 ORTHO05D003828 7.5e-16 87.4 80 52.5
Pp3c10_350 Physcomitrium patens HOM05D001937 ORTHO05D003828 2.9e-15 85.5 79 54.4
Pp3c14_1870 Physcomitrium patens HOM05D001937 ORTHO05D003828 6.4e-15 84.3 79 53.2
FAN21G3055 Fragaria x ananassa HOM05D001937 ORTHO05D003828 8.3e-15 84.0 75 56.0
FAN11G3092 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.4e-14 83.2 75 56.0
RcHm_v2.0_Chr5g0013491 Rosa chinensis HOM05D001937 ORTHO05D003828 2.4e-14 82.4 80 52.5
FAN25G3599 Fragaria x ananassa HOM05D001937 ORTHO05D003828 1.2e-13 80.1 75 54.7
FvH4_3g05980 Fragaria vesca HOM05D001937 ORTHO05D003828 2.0e-13 79.3 75 53.3
Mapoly0010s0177 Marchantia polymorpha HOM05D001937 ORTHO05D003828 2.0e-13 79.3 80 51.2
SEGI_35630 Sequoiadendron giganteum HOM05D001937 ORTHO05D003828 2.7e-13 79.0 78 51.3
TAR628G0280 Trochodendron aralioides HOM05D001937 ORTHO05D003828 7.8e-13 77.4 62 58.1
CBR_g2821 Chara braunii HOM05D001937 ORTHO05D003828 8.6e-12 73.9 76 52.6
Gohir.D10G124300 Gossypium hirsutum HOM05D001937 ORTHO05D003828 3.1e-09 65.5 45 66.7
FvH4_1g29900 Fragaria vesca HOM05D001937 ORTHO05D003828 2.9e-07 58.9 49 59.2
Lalb_Chr09g0325221 Lupinus albus HOM05D001937 ORTHO05D003828 1.1e-06 57.0 45 55.6
Aa31LG7G15320 Aethionema arabicum HOM05D001937 ORTHO05D003828 1.4e-06 56.6 38 71.1


User provided reference genes

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