Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p58740 Brassica napus HOM05D000119 ORTHO05D031924 7.2e-56 220.3 110 100.0
BcaC05g29650 Brassica carinata HOM05D000119 ORTHO05D031924 1.0e-46 189.9 141 73.8
BolC5t34527H Brassica oleracea HOM05D000119 ORTHO05D031924 1.7e-44 182.6 110 84.5
Sp3g07610 Schrenkiella parvula HOM05D000119 ORTHO05D000054 2.5e-16 89.0 222 33.8
Thhalv10021963m.g Eutrema salsugineum HOM05D000119 ORTHO05D000054 3.1e-14 82.0 234 31.6
BraA01t04311Z Brassica rapa HOM05D000119 ORTHO05D000054 1.2e-13 80.1 234 30.8
BcaC01g04216 Brassica carinata HOM05D000119 ORTHO05D000054 1.5e-13 79.7 213 32.9
BcaC09g48057 Brassica carinata HOM05D000119 ORTHO05D000054 1.5e-13 79.7 233 30.0
BolC1t05470H Brassica oleracea HOM05D000119 ORTHO05D000054 1.5e-13 79.7 233 30.0
BolC3t16646H Brassica oleracea HOM05D000119 ORTHO05D000054 1.5e-13 79.7 213 32.9
C03p43780 Brassica napus HOM05D000119 ORTHO05D000054 2.0e-13 79.3 213 32.9
A03p36120 Brassica napus HOM05D000119 ORTHO05D000054 3.4e-13 78.6 220 32.7
BraA03t12783Z Brassica rapa HOM05D000119 ORTHO05D000054 3.8e-12 75.1 220 31.8
CARHR083570 Cardamine hirsuta HOM05D000119 ORTHO05D000054 1.1e-11 73.6 235 28.9
Aa31LG3G1710 Aethionema arabicum HOM05D000119 ORTHO05D000054 1.9e-11 72.8 233 29.2
AL3G20340 Arabidopsis lyrata HOM05D000119 ORTHO05D000054 7.8e-10 67.4 61 57.4
BcaB04g18545 Brassica carinata HOM05D000119 ORTHO05D000054 7.8e-10 67.4 34 91.2
Carub.0003s0834 Capsella rubella HOM05D000119 ORTHO05D000054 7.8e-10 67.4 36 86.1
Lsat_1_v5_gn_9_34380 Lactuca sativa HOM05D000119 ORTHO05D000054 7.8e-10 67.4 202 29.7
BcaC09g48012 Brassica carinata HOM05D000119 ORTHO05D000054 1.0e-09 67.0 34 91.2
Lj2A84T89 Lonicera japonica HOM05D000119 ORTHO05D000054 1.3e-09 66.6 218 28.4
AT3G09230 Arabidopsis thaliana HOM05D000119 ORTHO05D000054 3.9e-09 65.1 233 28.8
THA.LOC104823273 Tarenaya hassleriana HOM05D000119 ORTHO05D000054 1.5e-08 63.2 210 29.0
Duzib093G0864 Durio zibethinus HOM05D000119 ORTHO05D000054 2.5e-08 62.4 213 26.3
HanXRQChr10g0293291 Helianthus annuus HOM05D000119 ORTHO05D000054 4.3e-08 61.6 192 29.7
Ciclev10031463m.g Citrus clementina HOM05D000119 ORTHO05D000054 5.6e-08 61.2 71 50.7
Manes.08G083200 Manihot esculenta HOM05D000119 ORTHO05D000054 7.3e-08 60.8 33 81.8
Ca_20658_v3 Cicer arietinum L. HOM05D000119 ORTHO05D000054 1.3e-07 60.1 35 74.3
ECA247G1978 Erigeron canadensis HOM05D000119 ORTHO05D000054 1.3e-07 60.1 191 27.7
Prupe.6G267600 Prunus persica HOM05D000119 ORTHO05D000054 1.3e-07 60.1 46 63.0
Cc02_g07090 Coffea canephora HOM05D000119 ORTHO05D000054 1.6e-07 59.7 90 42.2
Duzib106G0207 Durio zibethinus HOM05D000119 ORTHO05D000054 2.8e-07 58.9 33 78.8
Hma1.2p1_0026F.1_g016800 Hydrangea macrophylla HOM05D000119 ORTHO05D000054 2.8e-07 58.9 185 29.2
PGR142G4055 Punica granatum HOM05D000119 ORTHO05D000054 2.8e-07 58.9 77 44.2
Ah.10g036750 Amaranthus hybridus HOM05D000119 ORTHO05D000054 3.6e-07 58.5 37 73.0
Hund16012 Selenicereus undatus HOM05D000119 ORTHO05D000054 3.6e-07 58.5 81 40.7
Sc07g0006930 Simmondsia chinensis HOM05D000119 ORTHO05D000054 3.6e-07 58.5 204 27.5
Ciclev10012003m.g Citrus clementina HOM05D000119 ORTHO05D000054 4.8e-07 58.2 36 72.2
RcHm_v2.0_Chr3g0464251 Rosa chinensis HOM05D000119 ORTHO05D000054 4.8e-07 58.2 40 65.0
Actinidia13803 Actinidia chinensis HOM05D000119 ORTHO05D000054 6.2e-07 57.8 32 81.2
Actinidia29153 Actinidia chinensis HOM05D000119 ORTHO05D000054 6.2e-07 57.8 32 81.2
Glyma.01G107500 Glycine max HOM05D000119 ORTHO05D000054 6.2e-07 57.8 35 71.4
MD07G1211300 Malus domestica HOM05D000119 ORTHO05D000054 6.2e-07 57.8 37 70.3
PGR031G2341 Punica granatum HOM05D000119 ORTHO05D000054 6.2e-07 57.8 38 68.4
Thecc.05G025800 Theobroma cacao HOM05D000119 ORTHO05D000054 6.2e-07 57.8 41 63.4
EL10Ac2g04760 Beta vulgaris HOM05D000119 ORTHO05D000054 8.1e-07 57.4 81 40.7
CiPaw.09G203800 Carya illinoinensis HOM05D000119 ORTHO05D000054 8.1e-07 57.4 54 51.9
Glyma.03G073774 Glycine max HOM05D000119 ORTHO05D000054 8.1e-07 57.4 35 68.6
MD04G1142200 Malus domestica HOM05D000119 ORTHO05D000054 8.1e-07 57.4 34 73.5
MD12G1156800 Malus domestica HOM05D000119 ORTHO05D000054 8.1e-07 57.4 34 73.5
Ah.16g102860 Amaranthus hybridus HOM05D000119 ORTHO05D000054 1.1e-06 57.0 37 70.3
CiPaw.01G294200 Carya illinoinensis HOM05D000119 ORTHO05D000054 1.1e-06 57.0 71 47.9
Glyma.02G253100 Glycine max HOM05D000119 ORTHO05D000054 1.1e-06 57.0 37 67.6
Os01g0850400 Oryza sativa ssp. japonica HOM05D000119 ORTHO05D000054 1.1e-06 57.0 37 67.6
PGSC0003DMG400020338 Solanum tuberosum HOM05D000119 ORTHO05D000054 1.1e-06 57.0 38 65.8
vmacro10078 Vaccinium macrocarpon HOM05D000119 ORTHO05D000054 1.1e-06 57.0 210 27.1
AT3G55730 Arabidopsis thaliana HOM05D000119 ORTHO05D000054 1.4e-06 56.6 36 69.4
Eucgr.K03010 Eucalyptus grandis HOM05D000119 ORTHO05D000054 1.4e-06 56.6 35 68.6
Solyc05g052850.3 Solanum lycopersicum HOM05D000119 ORTHO05D000054 1.4e-06 56.6 36 69.4
Thecc.10G028800 Theobroma cacao HOM05D000119 ORTHO05D000054 1.4e-06 56.6 71 46.5
Atru.chr8.2116 Acer truncatum HOM05D000119 ORTHO05D000054 1.8e-06 56.2 36 69.4
AUR62022815 Chenopodium quinoa HOM05D000119 ORTHO05D000054 1.8e-06 56.2 81 40.7
COL.COLO4_14656 Corchorus olitorius HOM05D000119 ORTHO05D000054 1.8e-06 56.2 36 69.4
FvH4_6g12440 Fragaria vesca HOM05D000119 ORTHO05D000054 1.8e-06 56.2 40 62.5
FAN09G2350 Fragaria x ananassa HOM05D000119 ORTHO05D000054 1.8e-06 56.2 40 62.5
FAN14G3772 Fragaria x ananassa HOM05D000119 ORTHO05D000054 1.8e-06 56.2 40 62.5
Gohir.D09G158000 Gossypium hirsutum HOM05D000119 ORTHO05D000054 1.8e-06 56.2 34 70.6
MBI14_g28026_MAGBIO Magnolia biondii HOM05D000119 ORTHO05D000054 1.8e-06 56.2 36 69.4
MD01G1144700 Malus domestica HOM05D000119 ORTHO05D000054 1.8e-06 56.2 37 67.6
Solyc09g011780.3 Solanum lycopersicum HOM05D000119 ORTHO05D000054 1.8e-06 56.2 38 65.8
Aa31LG10G10720 Aethionema arabicum HOM05D000119 ORTHO05D000054 2.4e-06 55.8 82 43.9
AL5G36990 Arabidopsis lyrata HOM05D000119 ORTHO05D000054 2.4e-06 55.8 36 66.7
A09p48720 Brassica napus HOM05D000119 ORTHO05D000054 2.4e-06 55.8 36 72.2
BraA09t40324Z Brassica rapa HOM05D000119 ORTHO05D000054 2.4e-06 55.8 36 72.2
Carub.0005s2252 Capsella rubella HOM05D000119 ORTHO05D000054 2.4e-06 55.8 36 69.4
CARHR134800 Cardamine hirsuta HOM05D000119 ORTHO05D000054 2.4e-06 55.8 36 69.4
AUR62012180 Chenopodium quinoa HOM05D000119 ORTHO05D000054 2.4e-06 55.8 81 40.7
Lj3g0008585 Lotus japonicus HOM05D000119 ORTHO05D000054 2.4e-06 55.8 37 64.9
Lalb_Chr13g0291321 Lupinus albus HOM05D000119 ORTHO05D000054 2.4e-06 55.8 35 65.7
Nn2g13559 Nelumbo nucifera HOM05D000119 ORTHO05D000054 2.4e-06 55.8 72 44.4
Peaxi162Scf01302g00033 Petunia axillaris HOM05D000119 ORTHO05D000054 2.4e-06 55.8 46 58.7
TAR369G0477 Trochodendron aralioides HOM05D000119 ORTHO05D000054 2.4e-06 55.8 70 44.3
Atru.chr12.282 Acer truncatum HOM05D000119 ORTHO05D000054 3.1e-06 55.5 72 43.1
Atru.chr12.321 Acer truncatum HOM05D000119 ORTHO05D000054 3.1e-06 55.5 72 43.1
Aqoxy128s007 Aquilegia oxysepala HOM05D000119 ORTHO05D000054 3.1e-06 55.5 37 64.9
Aqoxy1G00771 Aquilegia oxysepala HOM05D000119 ORTHO05D000054 3.1e-06 55.5 37 64.9
C08p31040 Brassica napus HOM05D000119 ORTHO05D000054 3.1e-06 55.5 108 34.3
CANSAT56G0223 Cannabis sativa HOM05D000119 ORTHO05D000054 3.1e-06 55.5 68 44.1
CANSAT56G4092 Cannabis sativa HOM05D000119 ORTHO05D000054 3.1e-06 55.5 68 44.1
Carub.0004s2201 Capsella rubella HOM05D000119 ORTHO05D000054 3.1e-06 55.5 36 69.4
Haze_20914 Corylus avellana HOM05D000119 ORTHO05D000054 3.1e-06 55.5 33 72.7
Thhalv10010431m.g Eutrema salsugineum HOM05D000119 ORTHO05D000054 3.1e-06 55.5 36 69.4
FAN05G4167 Fragaria x ananassa HOM05D000119 ORTHO05D000054 3.1e-06 55.5 33 72.7
Gohir.A09G162400 Gossypium hirsutum HOM05D000119 ORTHO05D000054 3.1e-06 55.5 46 58.7
Gorai.006G179700 Gossypium raimondii HOM05D000119 ORTHO05D000054 3.1e-06 55.5 46 58.7
Hma1.2p1_1521F.1_g288730 Hydrangea macrophylla HOM05D000119 ORTHO05D000054 3.1e-06 55.5 37 64.9
Phvul.010G075500 Phaseolus vulgaris HOM05D000119 ORTHO05D000054 3.1e-06 55.5 35 65.7
Rhsim05G0201400 Rhododendron simsii HOM05D000119 ORTHO05D000054 3.1e-06 55.5 32 78.1
SHI03566 Sapria himalayana HOM05D000119 ORTHO05D000054 3.1e-06 55.5 36 69.4
TWI74G0808 Tripterygium wilfordii HOM05D000119 ORTHO05D000054 3.1e-06 55.5 78 42.3
VMungo0331G1269 Vigna mungo HOM05D000119 ORTHO05D000054 3.1e-06 55.5 35 65.7
GSVIVG01016393001 Vitis vinifera HOM05D000119 ORTHO05D000054 3.1e-06 55.5 95 35.8
BcaB01g00066 Brassica carinata HOM05D000119 ORTHO05D000054 4.0e-06 55.1 36 69.4
BcaC07g39900 Brassica carinata HOM05D000119 ORTHO05D000054 4.0e-06 55.1 36 69.4
BolC8t50727H Brassica oleracea HOM05D000119 ORTHO05D000054 4.0e-06 55.1 36 69.4
CARHR165830 Cardamine hirsuta HOM05D000119 ORTHO05D000054 4.0e-06 55.1 36 69.4
Cc06_g01890 Coffea canephora HOM05D000119 ORTHO05D000054 4.0e-06 55.1 35 68.6
MBI05_g10288_MAGBIO Magnolia biondii HOM05D000119 ORTHO05D000054 4.0e-06 55.1 72 41.7
QL02p028634 Quercus lobata HOM05D000119 ORTHO05D000054 4.0e-06 55.1 36 69.4
QL07p027714 Quercus lobata HOM05D000119 ORTHO05D000054 4.0e-06 55.1 36 69.4
RcHm_v2.0_Chr1g0369061 Rosa chinensis HOM05D000119 ORTHO05D000054 4.0e-06 55.1 67 47.8
Sp5g06740 Schrenkiella parvula HOM05D000119 ORTHO05D000054 4.0e-06 55.1 36 66.7
Sopen09g006600 Solanum pennellii HOM05D000119 ORTHO05D000054 4.0e-06 55.1 38 63.2
TPR.G32526 Trifolium pratense HOM05D000080 ORTHO05D000053 4.0e-06 55.1 46 60.9
TAR633G0698 Trochodendron aralioides HOM05D000119 ORTHO05D000054 4.0e-06 55.1 36 66.7
TAR636G0956 Trochodendron aralioides HOM05D000119 ORTHO05D000054 4.0e-06 55.1 34 70.6
VMungo0647G0314 Vigna mungo HOM05D000119 ORTHO05D000054 4.0e-06 55.1 35 74.3
Actinidia16584 Actinidia chinensis HOM05D000119 ORTHO05D000054 5.3e-06 54.7 37 64.9
MSTRG.19044 Avicennia marina HOM05D000119 ORTHO05D000054 5.3e-06 54.7 71 45.1
COL.COLO4_00280 Corchorus olitorius HOM05D000119 ORTHO05D000054 5.3e-06 54.7 102 37.3
FAN02G2143 Fragaria x ananassa HOM05D000119 ORTHO05D000054 5.3e-06 54.7 40 60.0
Glyma.14G063400 Glycine max HOM05D000119 ORTHO05D000054 5.3e-06 54.7 37 64.9
Gohir.A10G228100 Gossypium hirsutum HOM05D000119 ORTHO05D000054 5.3e-06 54.7 36 69.4
Gohir.D10G242100 Gossypium hirsutum HOM05D000119 ORTHO05D000054 5.3e-06 54.7 36 69.4
Gorai.011G278500 Gossypium raimondii HOM05D000119 ORTHO05D000054 5.3e-06 54.7 36 69.4
HanXRQChr07g0201851 Helianthus annuus HOM05D000119 ORTHO05D000054 5.3e-06 54.7 88 39.8
HanXRQChr07g0203181 Helianthus annuus HOM05D000119 ORTHO05D000054 5.3e-06 54.7 37 67.6
HanXRQChr07g0203191 Helianthus annuus HOM05D000119 ORTHO05D000054 5.3e-06 54.7 37 67.6
Lsat_1_v5_gn_2_124061 Lactuca sativa HOM05D000119 ORTHO05D000054 5.3e-06 54.7 37 67.6
Psat7g241840 Pisum sativum HOM05D000119 ORTHO05D000054 5.3e-06 54.7 35 68.6
Prupe.2G244100 Prunus persica HOM05D000119 ORTHO05D000054 5.3e-06 54.7 37 64.9
Sp4g22170 Schrenkiella parvula HOM05D000119 ORTHO05D000054 5.3e-06 54.7 36 69.4
Sc10g0002070 Simmondsia chinensis HOM05D000119 ORTHO05D000054 5.3e-06 54.7 37 67.6
MSTRG.5610 Avicennia marina HOM05D000119 ORTHO05D000054 6.9e-06 54.3 70 44.3
CSS0036026 Camellia sinensis var. sinensis HOM05D000119 ORTHO05D000054 6.9e-06 54.3 36 69.4
CANSAT35G1013 Cannabis sativa HOM05D000119 ORTHO05D000054 6.9e-06 54.3 35 68.6
CAN.G498.1 Capsicum annuum HOM05D000185 ORTHO05D000054 6.9e-06 54.3 36 69.4
Cfa001383 Carpinus fangiana HOM05D000119 ORTHO05D000054 6.9e-06 54.3 36 69.4
COL.COLO4_25600 Corchorus olitorius HOM05D000119 ORTHO05D000054 6.9e-06 54.3 71 46.5
Haze_17166 Corylus avellana HOM05D000119 ORTHO05D000054 6.9e-06 54.3 36 69.4
ECA238G3725 Erigeron canadensis HOM05D000119 ORTHO05D000054 6.9e-06 54.3 35 71.4
Thhalv10016794m.g Eutrema salsugineum HOM05D000119 ORTHO05D000054 6.9e-06 54.3 36 66.7
Hma1.2p1_0710F.1_g207490 Hydrangea macrophylla HOM05D000119 ORTHO05D000054 6.9e-06 54.3 36 69.4
Lj1A948G47 Lonicera japonica HOM05D000119 ORTHO05D000054 6.9e-06 54.3 36 69.4
Lalb_Chr10g0105181 Lupinus albus HOM05D000119 ORTHO05D000054 6.9e-06 54.3 35 71.4
Medtr4g019370 Medicago truncatula HOM05D000119 ORTHO05D000054 6.9e-06 54.3 36 66.7
Nn2g11313 Nelumbo nucifera HOM05D000119 ORTHO05D000054 6.9e-06 54.3 72 44.4
Sed0003318 Sechium edule HOM05D000119 ORTHO05D000054 6.9e-06 54.3 36 66.7
Sopen05g031360 Solanum pennellii HOM05D000119 ORTHO05D000054 6.9e-06 54.3 36 66.7
PGSC0003DMG400027190 Solanum tuberosum HOM05D000119 ORTHO05D000054 6.9e-06 54.3 36 66.7
THA.LOC104809522 Tarenaya hassleriana HOM05D000119 ORTHO05D000054 6.9e-06 54.3 36 69.4
THA.LOC104827033 Tarenaya hassleriana HOM05D000119 ORTHO05D000054 6.9e-06 54.3 37 70.3
GSVIVG01034041001 Vitis vinifera HOM05D000119 ORTHO05D000054 6.9e-06 54.3 33 72.7
ATR0618G167 Amborella trichopoda HOM05D000119 ORTHO05D000054 9.0e-06 53.9 37 64.9
MSTRG.27356 Avicennia marina HOM05D000119 ORTHO05D000054 9.0e-06 53.9 37 64.9
CAN.G598.5 Capsicum annuum HOM05D000119 ORTHO05D000054 9.0e-06 53.9 36 66.7
Cpa.g.sc19.238 Carica papaya HOM05D000119 ORTHO05D000054 9.0e-06 53.9 36 63.9
Cpa.g.sc56.79 Carica papaya HOM05D000119 ORTHO05D000054 9.0e-06 53.9 36 66.7
CDE02G2222 Ceratophyllum demersum HOM05D000119 ORTHO05D000054 9.0e-06 53.9 37 64.9
CDE09G0426 Ceratophyllum demersum HOM05D000119 ORTHO05D000054 9.0e-06 53.9 37 64.9
Cre09.g399067 Chlamydomonas reinhardtii HOM05D000119 ORTHO05D000054 9.0e-06 53.9 58 51.7
ClCG04G007380 Citrullus lanatus HOM05D000119 ORTHO05D000054 9.0e-06 53.9 36 63.9
MELO3C003212.2 Cucumis melo HOM05D000119 ORTHO05D000054 9.0e-06 53.9 36 63.9
CsaV3_4G025860 Cucumis sativus L. HOM05D000119 ORTHO05D000054 9.0e-06 53.9 36 63.9
ECA238G2548 Erigeron canadensis HOM05D000119 ORTHO05D000054 9.0e-06 53.9 37 67.6
Manes.10G019700 Manihot esculenta HOM05D000119 ORTHO05D000054 9.0e-06 53.9 36 66.7
Phvul.008G222600 Phaseolus vulgaris HOM05D000119 ORTHO05D000054 9.0e-06 53.9 35 68.6
Psat2g031320 Pisum sativum HOM05D000119 ORTHO05D000054 9.0e-06 53.9 36 66.7
Rhsim09G0170900 Rhododendron simsii HOM05D000119 ORTHO05D000054 9.0e-06 53.9 36 69.4
Zm00001eb367660 Zea mays HOM05D000119 ORTHO05D000054 9.0e-06 53.9 37 64.9


User provided reference genes

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