Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 4.3e-142 508.1 273 100.0
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 2.1e-141 505.8 273 98.2
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 2.1e-141 505.8 273 98.2
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 3.5e-136 488.4 273 97.8
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 1.9e-134 482.6 273 94.5
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 1.8e-124 449.5 273 89.7
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 2.7e-112 409.1 266 83.8
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 5.0e-98 361.7 265 77.0
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 2.5e-97 359.4 266 78.9
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 2.6e-94 349.4 266 75.9
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 4.4e-94 348.6 266 77.1
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 2.0e-83 313.2 266 71.4
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 3.6e-80 302.4 255 73.3
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 1.0e-58 231.1 164 75.0
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 2.0e-54 216.9 265 49.8
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 1.7e-53 213.8 264 50.8
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 8.3e-53 211.5 267 52.8
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.9e-52 210.3 261 47.9
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 3.2e-52 209.5 261 47.5
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 3.2e-52 209.5 254 55.5
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 4.1e-52 209.1 259 50.6
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 6.0e-51 205.3 260 51.2
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 8.6e-50 201.4 261 52.5
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 8.6e-50 201.4 260 48.1
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 1.5e-49 200.7 263 48.7
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 1.9e-49 200.3 268 50.4
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.9e-49 200.3 259 50.6
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.3e-49 199.1 258 53.5
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 9.6e-49 198.0 264 49.2
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 9.6e-49 198.0 271 50.2
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.2e-48 197.6 256 53.9
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 1.6e-48 197.2 264 49.2
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 2.8e-48 196.4 262 50.4
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 3.6e-48 196.1 265 46.4
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.6e-48 196.1 272 49.3
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 4.7e-48 195.7 265 46.0
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 4.7e-48 195.7 276 48.6
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 6.2e-48 195.3 285 47.0
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 8.1e-48 194.9 267 50.6
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 8.1e-48 194.9 260 48.5
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.1e-47 194.5 281 47.7
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 1.8e-47 193.7 260 49.6
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.4e-47 193.4 271 48.7
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 3.1e-47 193.0 264 48.1
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.0e-47 192.6 272 47.1
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 5.2e-47 192.2 266 48.1
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 1.2e-46 191.0 262 51.5
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.2e-46 191.0 266 51.1
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 1.5e-46 190.7 256 47.3
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 2.6e-46 189.9 255 51.4
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 3.4e-46 189.5 267 49.4
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.4e-46 189.5 275 46.5
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 3.4e-46 189.5 259 46.7
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 4.4e-46 189.1 261 47.9
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 5.8e-46 188.7 259 48.6
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 5.8e-46 188.7 265 48.7
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 7.6e-46 188.3 254 48.8
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 2.2e-45 186.8 261 46.4
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 3.8e-45 186.0 258 48.4
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 3.8e-45 186.0 255 47.5
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.1e-44 184.5 270 45.6
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.4e-44 184.1 231 48.9
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 1.4e-44 184.1 262 49.2
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 1.4e-44 184.1 262 49.2
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 1.9e-44 183.7 267 46.8
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 5.4e-44 182.2 262 44.3
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 1.2e-43 181.0 268 47.0
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 2.1e-43 180.3 267 47.9
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 2.7e-43 179.9 272 46.7
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 1.0e-42 177.9 266 48.1
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 1.0e-42 177.9 261 47.5
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 3.9e-42 176.0 266 46.2
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 1.9e-41 173.7 265 44.9
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 1.9e-41 173.7 166 54.2
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 3.3e-41 172.9 263 45.6
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 5.6e-41 172.2 259 47.5
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 5.6e-41 172.2 174 52.3
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 7.3e-41 171.8 243 48.6
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.3e-40 171.0 258 43.0
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 1.6e-40 170.6 258 47.7
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 2.8e-40 169.9 257 41.6
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 3.6e-40 169.5 172 52.9
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 3.6e-40 169.5 171 53.2
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 3.6e-40 169.5 250 42.0
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 3.6e-40 169.5 263 46.8
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 4.8e-40 169.1 266 43.2
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 4.8e-40 169.1 264 46.2
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 6.2e-40 168.7 273 42.1
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 2.4e-39 166.8 258 44.2
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.1e-39 166.4 272 41.5
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 3.1e-39 166.4 261 44.8
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 6.9e-39 165.2 257 40.5
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 6.9e-39 165.2 260 45.0
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 1.2e-38 164.5 262 45.4
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.6e-38 163.3 260 46.9
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.6e-38 163.3 257 45.1
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 2.6e-38 163.3 257 46.3
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 2.6e-38 163.3 255 47.5
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 5.8e-38 162.2 286 40.2
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 7.6e-38 161.8 262 44.3
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 7.6e-38 161.8 260 46.9
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 7.6e-38 161.8 212 51.4
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 9.9e-38 161.4 267 43.1
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 1.3e-37 161.0 269 46.5
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 1.3e-37 161.0 252 45.6
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 1.7e-37 160.6 262 44.3
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 2.9e-37 159.8 326 38.3
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 9.3e-36 154.8 268 43.7
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 2.7e-35 153.3 271 39.1
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 1.3e-34 151.0 180 54.4
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 1.7e-34 150.6 258 43.4
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 6.6e-34 148.7 256 41.8
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 5.6e-33 145.6 271 39.9
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 5.6e-33 145.6 276 42.0
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 5.6e-33 145.6 265 40.0
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 7.3e-33 145.2 275 43.6
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 2.1e-32 143.7 298 41.3
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 6.2e-32 142.1 167 47.9
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 6.2e-32 142.1 251 40.2
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 5.3e-31 139.0 273 40.7
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 3.4e-30 136.3 254 40.2
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.3e-26 124.4 158 44.9
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 6.7e-26 122.1 133 48.9
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 8.7e-26 121.7 360 33.3
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 9.6e-25 118.2 256 43.4
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 1.1e-23 114.8 190 40.5
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 2.4e-23 113.6 154 50.6
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 2.4e-23 113.6 142 46.5
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 9.0e-23 111.7 138 48.6
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 1.4e-20 104.4 218 34.4
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 3.2e-20 103.2 147 43.5
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 7.1e-20 102.1 207 39.6
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 8.7e-18 95.1 91 49.5
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 3.3e-17 93.2 132 55.3
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 4.3e-17 92.8 135 54.1
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 9.6e-17 91.7 146 37.0
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 4.1e-15 86.3 164 40.9
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.2e-14 84.7 255 35.3
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 3.4e-14 83.2 151 33.1
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.3e-13 81.3 133 39.8
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 8.4e-13 78.6 57 59.6
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 1.1e-12 78.2 196 36.2
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 2.7e-11 73.6 132 46.2
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 6.1e-11 72.4 55 61.8
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 1.2e-06 58.2 39 61.5
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 1.2e-06 58.2 39 61.5
MCO09G383 Micromonas commoda HOM05D004579 ORTHO05D005376 3.4e-06 56.6 75 36.0


User provided reference genes

Program Settings