Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 4.3e-153 544.7 285 100.0
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 4.3e-153 544.7 285 100.0
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 4.3e-153 544.7 285 100.0
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 2.9e-149 531.9 285 97.5
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 1.9e-148 529.3 285 97.2
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 2.8e-144 515.4 285 93.0
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 4.5e-142 508.1 285 92.3
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 4.5e-142 508.1 285 92.3
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 4.5e-142 508.1 285 92.3
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 4.5e-142 508.1 285 92.3
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.0e-141 506.9 285 90.5
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 2.2e-141 505.8 285 91.9
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 1.1e-140 503.4 285 89.5
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 1.2e-139 500.0 285 90.5
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 5.2e-138 494.6 285 89.1
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 3.7e-136 488.4 285 87.4
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 1.2e-134 483.4 284 88.4
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 5.9e-134 481.1 277 88.4
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 1.0e-122 443.7 286 80.4
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 2.8e-107 392.5 285 72.3
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 1.8e-106 389.8 285 72.3
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 3.0e-106 389.0 282 71.6
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.4e-105 385.6 285 71.6
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 5.8e-105 384.8 285 71.2
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 1.3e-104 383.6 285 70.9
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 2.9e-104 382.5 289 69.2
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 4.9e-104 381.7 285 70.5
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 4.9e-104 381.7 286 68.2
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 6.4e-104 381.3 289 69.9
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 6.4e-104 381.3 251 80.1
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 1.4e-103 380.2 285 71.6
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 1.9e-103 379.8 282 69.5
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 4.1e-103 378.6 282 70.2
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 4.1e-103 378.6 282 69.5
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 9.2e-103 377.5 285 69.1
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 1.6e-102 376.7 282 68.8
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 1.6e-102 376.7 285 69.5
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 1.7e-101 373.2 257 75.1
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 1.1e-100 370.5 286 69.2
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 2.5e-100 369.4 285 69.5
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 4.3e-100 368.6 284 68.0
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 5.6e-100 368.2 284 67.6
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 7.3e-100 367.9 284 67.6
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 7.3e-100 367.9 286 70.3
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 7.3e-100 367.9 286 68.5
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 7.3e-100 367.9 279 71.7
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.6e-99 366.7 285 69.1
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 4.7e-99 365.2 286 69.9
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 4.7e-99 365.2 285 67.4
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 4.7e-99 365.2 285 67.4
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 8.0e-99 364.4 284 67.3
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 1.1e-98 364.0 285 67.0
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 1.8e-98 363.2 284 67.3
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 4.0e-98 362.1 285 67.0
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 5.2e-98 361.7 283 67.8
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 1.2e-97 360.5 279 67.4
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.2e-97 360.5 287 67.6
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 1.5e-97 360.1 285 66.3
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 2.6e-97 359.4 284 66.9
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 4.4e-97 358.6 287 66.2
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 7.5e-97 357.8 284 66.2
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 9.8e-97 357.5 282 66.3
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 2.9e-96 355.9 283 65.7
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 3.7e-96 355.5 287 66.6
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 8.3e-96 354.4 285 66.3
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 1.1e-95 354.0 278 66.2
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 2.4e-95 352.8 279 66.3
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 2.4e-95 352.8 287 66.9
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 7.0e-95 351.3 271 69.7
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 7.0e-95 351.3 284 64.8
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 1.2e-94 350.5 286 67.5
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.6e-94 350.1 296 66.9
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 2.1e-94 349.7 278 66.9
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 2.1e-94 349.7 287 65.9
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 3.5e-94 349.0 271 69.4
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 3.5e-94 349.0 287 64.8
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 6.0e-94 348.2 245 72.7
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 1.0e-93 347.4 285 66.0
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 1.7e-93 346.7 294 62.9
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.7e-93 346.7 227 77.1
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 2.3e-93 346.3 287 65.9
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 3.9e-93 345.5 290 63.4
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 6.6e-93 344.7 284 65.5
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 8.6e-93 344.4 285 64.2
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.5e-92 342.8 289 64.4
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 2.5e-92 342.8 293 63.5
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 2.5e-92 342.8 288 63.2
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 3.3e-92 342.4 244 72.5
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 1.2e-91 340.5 285 65.6
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 1.2e-91 340.5 293 63.8
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 2.1e-91 339.7 321 60.1
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 3.6e-91 339.0 285 63.9
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 6.2e-91 338.2 278 63.3
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 5.2e-90 335.1 278 65.1
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 6.8e-90 334.7 283 64.0
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 6.8e-90 334.7 277 62.8
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 4.4e-89 332.0 243 70.4
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 1.3e-88 330.5 226 72.1
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.7e-88 330.1 281 62.6
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 1.7e-88 330.1 279 64.5
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 1.4e-87 327.0 216 76.9
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 1.4e-87 327.0 226 70.8
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 3.2e-87 325.9 285 63.2
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 7.1e-87 324.7 246 69.1
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.0e-85 320.9 291 61.5
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 3.0e-85 319.3 285 62.1
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 3.0e-85 319.3 279 63.1
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 8.6e-85 317.8 282 61.0
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 7.3e-84 314.7 253 64.4
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 3.1e-82 309.3 290 60.0
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 5.8e-81 305.1 228 69.7
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 3.2e-79 299.3 241 64.3
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 7.8e-78 294.7 283 58.0
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 1.5e-76 290.4 233 62.7
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 1.6e-75 287.0 234 62.4
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 3.6e-75 285.8 234 62.4
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 8.1e-75 284.6 287 57.5
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 9.9e-73 277.7 215 68.4
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 2.1e-70 270.0 300 48.0
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 9.6e-68 261.2 237 57.0
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 6.2e-67 258.5 262 53.1
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 5.3e-66 255.4 295 46.8
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.8e-59 233.0 197 54.8
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.4e-58 229.9 197 54.3
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.1e-58 229.6 197 53.8
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 6.9e-58 228.4 197 53.8
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.4e-56 221.5 210 58.6
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 1.2e-54 217.6 271 49.8
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 7.4e-52 208.4 150 68.0
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 5.3e-50 202.2 136 72.8
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.4e-49 199.5 137 73.7
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 2.9e-48 196.4 246 50.8
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.1e-47 194.5 197 48.7
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.2e-46 191.0 211 52.6
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.7e-45 185.3 224 49.1
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.3e-37 160.2 171 52.0
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-36 156.4 178 48.3
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 5.3e-34 149.1 100 79.0
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 5.3e-34 149.1 100 79.0
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.2e-31 139.4 182 41.2
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 3.0e-29 133.3 119 60.5
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 4.4e-28 129.4 83 77.1
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.7e-28 129.0 199 36.7
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 3.8e-24 116.3 192 38.5
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 6.5e-24 115.5 76 73.7
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 2.7e-22 110.2 217 31.8
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.7e-22 109.4 206 39.3
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.0e-21 106.7 190 40.5
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 5.3e-18 95.9 51 90.2
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.6e-17 94.4 67 65.7
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 2.0e-17 94.0 91 51.6
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 4.5e-17 92.8 65 64.6
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 5.9e-17 92.4 57 71.9
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 5.0e-16 89.4 57 70.2
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 4.7e-14 82.8 60 73.3
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 4.7e-14 82.8 60 73.3
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 6.1e-14 82.4 63 63.5
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 3.0e-13 80.1 90 52.2
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 3.0e-13 80.1 61 68.9
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 9.7e-12 75.1 53 64.2
BolC6t36313H Brassica oleracea HOM05D004641 ORTHO05D022007 1.6e-09 67.8 44 77.3
BraA03t14352Z Brassica rapa HOM05D004641 ORTHO05D022007 4.5e-09 66.2 46 71.7


User provided reference genes

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