Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 0.0e+00 1218.0 619 100.0
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 0.0e+00 1211.4 619 99.4
A06p12870 Brassica napus HOM05D006139 ORTHO05D007681 0.0e+00 1193.3 619 97.7
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 0.0e+00 1181.4 619 96.8
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 0.0e+00 1154.0 622 95.7
Sp1g15110 Schrenkiella parvula HOM05D006139 ORTHO05D007681 0.0e+00 1149.0 621 93.1
Thhalv10007085m.g Eutrema salsugineum HOM05D006139 ORTHO05D007681 0.0e+00 1146.7 621 92.8
BraA06t24447Z Brassica rapa HOM05D006139 ORTHO05D007681 0.0e+00 1141.3 619 94.7
Carub.0001s1670 Capsella rubella HOM05D006139 ORTHO05D007681 0.0e+00 1100.5 619 88.7
AT1G16970 Arabidopsis thaliana HOM05D006139 ORTHO05D007681 0.0e+00 1095.9 622 88.6
CARHR017480 Cardamine hirsuta HOM05D006139 ORTHO05D007681 0.0e+00 1082.8 622 87.8
THA.LOC104812308 Tarenaya hassleriana HOM05D006139 ORTHO05D007681 1.1e-278 963.0 620 78.4
Potri.011G107400 Populus trichocarpa HOM05D006139 ORTHO05D007681 1.0e-260 903.3 628 70.2
Manes.03G099000 Manihot esculenta HOM05D006139 ORTHO05D007681 8.3e-258 893.6 629 70.3
Sabra11G0095200 Salix brachista HOM05D006139 ORTHO05D007681 1.0e-255 886.7 636 69.5
Hma1.2p1_0412F.1_g147150 Hydrangea macrophylla HOM05D006139 ORTHO05D007681 5.0e-255 884.4 629 69.6
Ciclev10019318m.g Citrus clementina HOM05D006139 ORTHO05D007681 1.6e-253 879.4 625 69.4
CSS0045945 Camellia sinensis var. sinensis HOM05D006139 ORTHO05D007681 5.2e-252 874.4 629 68.8
Prupe.1G178000 Prunus persica HOM05D006139 ORTHO05D007681 3.5e-248 861.7 629 66.5
Duzib213G0841 Durio zibethinus HOM05D006139 ORTHO05D007681 5.9e-248 860.9 626 67.9
GSVIVG01031668001 Vitis vinifera HOM05D006139 ORTHO05D007681 7.8e-248 860.5 627 68.6
TWI38G2388 Tripterygium wilfordii HOM05D006139 ORTHO05D007681 5.0e-247 857.8 626 67.3
Eucgr.F03241 Eucalyptus grandis HOM05D006139 ORTHO05D007681 3.6e-245 851.7 628 67.2
MELO3C017678.2 Cucumis melo HOM05D006139 ORTHO05D007681 6.2e-245 850.9 628 66.7
QL10p044141 Quercus lobata HOM05D006139 ORTHO05D007681 8.0e-245 850.5 662 63.6
Thecc.07G123700 Theobroma cacao HOM05D006139 ORTHO05D007681 1.4e-244 849.7 629 66.5
RcHm_v2.0_Chr4g0409801 Rosa chinensis HOM05D006139 ORTHO05D007681 1.5e-243 846.3 628 65.8
Solyc09g098230.3 Solanum lycopersicum HOM05D006139 ORTHO05D007681 2.6e-243 845.5 624 66.0
Cc03_g10570 Coffea canephora HOM05D006139 ORTHO05D007681 3.4e-243 845.1 628 67.2
Sopen09g036170 Solanum pennellii HOM05D006139 ORTHO05D007681 4.4e-243 844.7 624 66.0
Gohir.A01G052100 Gossypium hirsutum HOM05D006139 ORTHO05D007681 9.8e-243 843.6 625 67.7
MD13G1278700 Malus domestica HOM05D006139 ORTHO05D007681 1.7e-242 842.8 628 65.3
Sed0017452 Sechium edule HOM05D006139 ORTHO05D007681 2.2e-242 842.4 627 66.8
arahy.Tifrunner.gnm1.ann1.46LBLY Arachis hypogaea HOM05D006139 ORTHO05D007681 3.7e-242 841.6 628 65.6
CsaV3_4G003770 Cucumis sativus L. HOM05D006139 ORTHO05D007681 6.4e-242 840.9 627 65.9
Gorai.002G052100 Gossypium raimondii HOM05D006139 ORTHO05D007681 8.3e-242 840.5 625 67.2
TAR365G1167 Trochodendron aralioides HOM05D006139 ORTHO05D007681 5.4e-241 837.8 608 67.9
Lsat_1_v5_gn_3_24941 Lactuca sativa HOM05D006139 ORTHO05D007681 7.8e-240 833.9 625 65.8
Lalb_Chr06g0164661 Lupinus albus HOM05D006139 ORTHO05D007681 8.6e-239 830.5 630 65.4
Sc22g0003230 Simmondsia chinensis HOM05D006139 ORTHO05D007681 8.6e-239 830.5 624 65.9
Glyma.20G248800 Glycine max HOM05D006139 ORTHO05D007681 1.5e-238 829.7 635 64.3
PSO017G2886 Papaver somniferum HOM05D006139 ORTHO05D007681 1.5e-238 829.7 625 64.5
CANSAT11G1108 Cannabis sativa HOM05D006139 ORTHO05D007681 1.9e-238 829.3 629 65.0
Aqoxy2G03950 Aquilegia oxysepala HOM05D006139 ORTHO05D007681 9.5e-238 827.0 630 64.8
PSO675G6876 Papaver somniferum HOM05D006139 ORTHO05D007681 3.6e-237 825.1 627 64.0
ECA246G3778 Erigeron canadensis HOM05D006139 ORTHO05D007681 1.1e-236 823.5 627 64.9
Rhsim07G0086500 Rhododendron simsii HOM05D006139 ORTHO05D007681 5.2e-236 821.2 720 59.6
FvH4_4g12150 Fragaria vesca HOM05D006139 ORTHO05D007681 6.8e-236 820.8 628 63.7
FAN12G2778 Fragaria x ananassa HOM05D006139 ORTHO05D007681 2.0e-235 819.3 628 63.5
CiPaw.01G108300 Carya illinoinensis HOM05D006139 ORTHO05D007681 3.4e-235 818.5 629 64.4
Migut.N00440 Erythranthe guttata HOM05D006139 ORTHO05D007681 1.3e-234 816.6 629 65.3
Nn3g20967 Nelumbo nucifera HOM05D006139 ORTHO05D007681 6.4e-234 814.3 607 65.2
SGA_v2.0_scaffold109G31142 Striga asiatica HOM05D006139 ORTHO05D007681 1.4e-233 813.1 632 64.4
PGR031G2404 Punica granatum HOM05D006139 ORTHO05D007681 1.2e-229 800.0 629 62.5
MSTRG.17865 Avicennia marina HOM05D006139 ORTHO05D007681 2.1e-229 799.3 628 64.3
Psat6g243280 Pisum sativum HOM05D006139 ORTHO05D007681 8.1e-229 797.3 629 62.3
VMungo0720G1636 Vigna mungo HOM05D006139 ORTHO05D007681 1.8e-228 796.2 630 63.2
Gohir.D01G041500 Gossypium hirsutum HOM05D006139 ORTHO05D007681 4.4e-227 791.6 586 67.4
Lj5g0023092 Lotus japonicus HOM05D006139 ORTHO05D007681 2.4e-225 785.8 627 62.2
Medtr1g116980 Medicago truncatula HOM05D006139 ORTHO05D007681 3.2e-225 785.4 626 62.0
Zm00001eb116810 Zea mays HOM05D006139 ORTHO05D007681 2.5e-222 775.8 631 61.5
Phvul.007G001600 Phaseolus vulgaris HOM05D006139 ORTHO05D007681 9.6e-222 773.9 629 61.8
Hund19684 Selenicereus undatus HOM05D006139 ORTHO05D007681 9.3e-217 757.3 624 60.3
ATR0609G005 Amborella trichopoda HOM05D006139 ORTHO05D007681 1.3e-215 753.4 630 60.3
FAN17G0552 Fragaria x ananassa HOM05D006139 ORTHO05D007681 7.3e-214 747.7 628 59.6
Dinv44237 Davidia involucrata HOM05D006139 ORTHO05D007681 9.6e-214 747.3 494 72.7
FAN07G2792 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.3e-213 746.9 639 58.8
arahy.Tifrunner.gnm1.ann1.JAL8JD Arachis hypogaea HOM05D006139 ORTHO05D007681 2.1e-213 746.1 636 60.5
FAN12G0395 Fragaria x ananassa HOM05D006139 ORTHO05D007681 2.8e-213 745.7 640 58.9
CAN.G710.40 Capsicum annuum HOM05D006139 ORTHO05D007681 1.1e-212 743.8 623 61.0
AUR62018029 Chenopodium quinoa HOM05D006139 ORTHO05D007681 9.6e-206 720.7 640 57.8
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 1.6e-205 719.9 640 59.5
AUR62003718 Chenopodium quinoa HOM05D006139 ORTHO05D007681 9.6e-198 694.1 608 58.6
Lj4A728T41 Lonicera japonica HOM05D006139 ORTHO05D007681 6.2e-197 691.4 587 61.2
vmacro13984 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 1.7e-194 683.3 740 52.2
MBI07_g00628_MAGBIO Magnolia biondii HOM05D006139 ORTHO05D007681 1.6e-189 666.8 628 55.3
Haze_11079 Corylus avellana HOM05D006139 ORTHO05D007681 1.4e-188 663.7 629 57.1
Nitab4.5_0001687g0050 Nicotiana tabacum HOM05D006139 ORTHO05D007681 4.6e-184 648.7 586 57.8
Nitab4.5_0001526g0130 Nicotiana tabacum HOM05D006139 ORTHO05D007681 5.1e-175 618.6 642 53.1
Aa31LG7G1410 Aethionema arabicum HOM05D006139 ORTHO05D007681 1.4e-172 610.5 621 57.3
Peaxi162Scf00286g00443 Petunia axillaris HOM05D006139 ORTHO05D007681 3.4e-171 605.9 624 54.6
ClCG07G016640 Citrullus lanatus HOM05D006139 ORTHO05D007681 4.2e-169 599.0 652 52.6
Mapoly0113s0020 Marchantia polymorpha HOM05D006139 ORTHO05D007681 1.4e-167 594.0 628 50.0
Oeu013397.2 Olea europaea HOM05D006139 ORTHO05D007681 1.1e-161 574.3 403 68.2
SMO361G0769 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 7.5e-150 535.0 563 49.4
SMO361G0513 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 1.3e-149 534.3 562 48.9
AagrBONN_evm.TU.Sc2ySwM_228.1556 Anthoceros agrestis HOM05D006139 ORTHO05D007681 7.2e-145 518.5 637 45.8
HPP92_015930 Vanilla planifolia HOM05D006139 ORTHO05D007681 1.6e-144 517.3 437 59.5
CBR_g19434 Chara braunii HOM05D006139 ORTHO05D007681 4.9e-133 479.2 630 42.1
Pp3c18_7140 Physcomitrium patens HOM05D006139 ORTHO05D007681 4.1e-132 476.1 625 42.6
Cpa.g.sc77.50 Carica papaya HOM05D006139 ORTHO05D007681 2.8e-128 463.4 561 46.5
CDE02G2779 Ceratophyllum demersum HOM05D006139 ORTHO05D007681 4.0e-127 459.5 441 54.4
Atru.chr2.2052 Acer truncatum HOM05D006139 ORTHO05D007681 2.8e-112 410.2 272 74.3
SHI27652 Sapria himalayana HOM05D006139 ORTHO05D007681 2.4e-111 407.1 360 58.6
Atru.chr2.2053 Acer truncatum HOM05D006139 ORTHO05D007681 4.4e-110 402.9 309 66.7
PGSC0003DMG400014069 Solanum tuberosum HOM05D006139 ORTHO05D007681 1.5e-105 387.9 288 67.4
TPR.G8868 Trifolium pratense HOM05D006139 ORTHO05D007681 1.5e-105 387.9 284 65.1
TPR.G8879 Trifolium pratense HOM05D006139 ORTHO05D007681 2.8e-96 357.1 297 60.6
Ca_11423_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 1.7e-85 321.2 244 63.9
SEGI_35314 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 4.9e-85 319.7 274 57.7
DCAR_005495 Daucus carota HOM05D006139 ORTHO05D007681 2.9e-77 293.9 244 62.7
DCAR_005496 Daucus carota HOM05D006139 ORTHO05D007681 9.3e-76 288.9 230 66.1
TPR.G8907 Trifolium pratense HOM05D006139 ORTHO05D007681 4.2e-68 263.5 225 60.4
unitig_578.g15953 Utricularia gibba HOM05D006139 ORTHO05D007681 1.5e-62 245.0 241 54.4
Cre13.g607500 Chlamydomonas reinhardtii HOM05D006139 ORTHO05D007681 6.1e-59 233.0 701 29.5
Os07g0184900 Oryza sativa ssp. japonica HOM05D006139 ORTHO05D007681 3.1e-55 220.7 158 66.5
Cfa021664 Carpinus fangiana HOM05D006139 ORTHO05D007681 2.9e-45 187.6 628 26.9
unitig_578.g15954 Utricularia gibba HOM05D006139 ORTHO05D004041 1.2e-43 182.2 159 59.1
Ah.03g143030 Amaranthus hybridus HOM05D006139 ORTHO05D007681 8.0e-43 179.5 183 52.5
FAN22G0061 Fragaria x ananassa HOM05D006139 ORTHO05D007681 8.0e-43 179.5 167 58.7
Hund20183 Selenicereus undatus HOM05D006139 ORTHO05D007681 1.4e-42 178.7 189 52.9
Ca_11425_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 6.8e-34 149.8 134 59.7
arahy.Tifrunner.gnm1.ann1.6RHH59 Arachis hypogaea HOM05D006139 ORTHO05D007681 1.3e-32 145.6 132 56.8
MCO14G338 Micromonas commoda HOM05D006139 ORTHO05D007681 5.0e-29 133.7 706 24.8
Ca_11424_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 9.5e-28 129.4 104 60.6
AUR62043732 Chenopodium quinoa HOM05D006139 ORTHO05D007681 8.0e-27 126.3 101 58.4
BolC4t22161H Brassica oleracea HOM05D006139 ORTHO05D007681 4.4e-25 120.6 83 77.1
CARHR154100 Cardamine hirsuta HOM05D006139 ORTHO05D007681 8.3e-24 116.3 66 83.3
CANSAT78G0600 Cannabis sativa HOM05D006139 ORTHO05D007681 1.2e-22 112.5 118 49.2
Ah.03g143010 Amaranthus hybridus HOM05D006139 ORTHO05D007681 2.3e-21 108.2 128 43.8
SEGI_31905 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 2.3e-18 98.2 70 64.3
HanXRQChr13g0406711 Helianthus annuus HOM05D006139 ORTHO05D007681 6.0e-14 83.6 57 66.7
vmacro12608 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 1.3e-13 82.4 65 64.6
Zm00001eb114470 Zea mays HOM05D006139 ORTHO05D007681 1.3e-13 82.4 65 63.1
SEGI_11325 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 2.1e-11 75.1 65 53.8
Eucgr.L02132 Eucalyptus grandis HOM05D006139 ORTHO05D007681 4.0e-10 70.9 48 66.7
Dinv25612 Davidia involucrata HOM05D000447 ORTHO05D007681 1.2e-06 59.3 116 37.9


User provided reference genes

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