Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p13460 Brassica napus HOM05D005464 ORTHO05D006803 1.7e-194 682.6 356 100.0
BolC5t30083H Brassica oleracea HOM05D005464 ORTHO05D006803 6.3e-194 680.6 356 99.7
A06p11340 Brassica napus HOM05D005464 ORTHO05D006803 4.4e-187 657.9 356 96.3
BraA06t24313Z Brassica rapa HOM05D005464 ORTHO05D006803 9.8e-187 656.8 356 96.1
BcaC05g25470 Brassica carinata HOM05D005464 ORTHO05D006803 3.7e-178 628.2 356 91.6
Sp1g13650 Schrenkiella parvula HOM05D005464 ORTHO05D006803 3.3e-166 588.6 356 86.0
AT1G15330 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 6.4e-162 574.3 354 83.1
AL1G27420 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 1.1e-161 573.5 354 83.9
Thhalv10008048m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 7.8e-160 567.4 356 83.1
Carub.0001s1508 Capsella rubella HOM05D005464 ORTHO05D006803 1.3e-159 566.6 356 82.9
CARHR015860 Cardamine hirsuta HOM05D005464 ORTHO05D006803 1.7e-159 566.2 356 82.0
Aa31LG7G100 Aethionema arabicum HOM05D005464 ORTHO05D006803 9.9e-147 523.9 363 76.3
THA.LOC104812511 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 1.6e-125 453.4 366 65.8
Cfa001959 Carpinus fangiana HOM05D005464 ORTHO05D006803 4.8e-117 425.2 361 62.9
Atru.chr1.2934 Acer truncatum HOM05D005464 ORTHO05D006803 1.3e-114 417.2 375 59.5
RcHm_v2.0_Chr2g0135251 Rosa chinensis HOM05D005464 ORTHO05D006803 1.1e-113 414.1 384 58.6
Manes.11G057000 Manihot esculenta HOM05D005464 ORTHO05D006803 3.2e-113 412.5 365 60.0
TWI12G0099 Tripterygium wilfordii HOM05D005464 ORTHO05D006803 1.6e-112 410.2 358 58.9
PGR031G2541 Punica granatum HOM05D005464 ORTHO05D006803 7.9e-112 407.9 368 59.0
Prupe.3G087600 Prunus persica HOM05D005464 ORTHO05D006803 1.1e-110 404.1 377 57.6
Cpa.g.sc10.270 Carica papaya HOM05D005464 ORTHO05D006803 3.3e-110 402.5 368 60.1
FvH4_6g29660 Fragaria vesca HOM05D005464 ORTHO05D006803 9.7e-110 401.0 384 56.5
Lsat_1_v5_gn_4_89921 Lactuca sativa HOM05D005464 ORTHO05D006803 9.7e-110 401.0 353 60.3
MD17G1212300 Malus domestica HOM05D005464 ORTHO05D006803 1.3e-109 400.6 374 57.8
Haze_16562 Corylus avellana HOM05D005464 ORTHO05D006803 2.2e-109 399.8 378 58.5
ECA232G3027 Erigeron canadensis HOM05D005464 ORTHO05D006803 2.8e-109 399.4 369 57.5
CANSAT56G0380 Cannabis sativa HOM05D005464 ORTHO05D006803 4.8e-109 398.7 365 59.5
Gorai.009G128200 Gossypium raimondii HOM05D005464 ORTHO05D006803 4.8e-109 398.7 376 57.7
Gohir.A05G123300 Gossypium hirsutum HOM05D005464 ORTHO05D006803 6.3e-109 398.3 375 57.6
FAN05G5161 Fragaria x ananassa HOM05D005464 ORTHO05D006803 8.2e-109 397.9 367 57.2
GSVIVG01017342001 Vitis vinifera HOM05D005464 ORTHO05D006803 1.4e-108 397.1 347 60.8
Eucgr.J03066 Eucalyptus grandis HOM05D005464 ORTHO05D006803 1.8e-108 396.7 353 59.8
Glyma.13G365800 Glycine max HOM05D005464 ORTHO05D006803 1.8e-108 396.7 364 58.0
THA.LOC104812509 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 2.4e-108 396.4 357 58.8
Glyma.15G007300 Glycine max HOM05D005464 ORTHO05D006803 3.1e-108 396.0 354 59.0
Thecc.06G025100 Theobroma cacao HOM05D000467 ORTHO05D000379 4.1e-108 395.6 371 56.9
Lj3g0027830 Lotus japonicus HOM05D005464 ORTHO05D006803 6.9e-108 394.8 350 58.9
Phvul.005G178300 Phaseolus vulgaris HOM05D005464 ORTHO05D006803 6.9e-108 394.8 363 58.7
Psat5g302720 Pisum sativum HOM05D005464 ORTHO05D006803 6.9e-108 394.8 373 55.8
COL.COLO4_11947 Corchorus olitorius HOM05D005464 ORTHO05D006803 9.1e-108 394.4 355 60.0
Lalb_Chr14g0373811 Lupinus albus HOM05D005464 ORTHO05D006803 1.2e-107 394.0 376 55.3
VMungo1080G0510 Vigna mungo HOM05D005464 ORTHO05D006803 1.5e-107 393.7 363 57.9
FAN09G2673 Fragaria x ananassa HOM05D005464 ORTHO05D006803 3.4e-107 392.5 394 54.8
Lalb_Chr22g0350841 Lupinus albus HOM05D005464 ORTHO05D006803 3.4e-107 392.5 363 55.4
Medtr2g103910 Medicago truncatula HOM05D005464 ORTHO05D006803 3.4e-107 392.5 355 56.9
TPR.G37199 Trifolium pratense HOM05D005464 ORTHO05D006803 1.0e-106 391.0 388 55.2
Sed0012798 Sechium edule HOM05D005464 ORTHO05D006803 1.7e-106 390.2 350 57.7
CiPaw.02G157400 Carya illinoinensis HOM05D005464 ORTHO05D006803 3.8e-106 389.0 330 63.0
Actinidia15983 Actinidia chinensis HOM05D005464 ORTHO05D006803 1.1e-105 387.5 365 56.7
Gohir.D05G124200 Gossypium hirsutum HOM05D005464 ORTHO05D006803 1.9e-105 386.7 375 57.1
HanXRQChr16g0500301 Helianthus annuus HOM05D005464 ORTHO05D006803 1.6e-104 383.6 346 57.8
Ca_01055_v3 Cicer arietinum L. HOM05D005464 ORTHO05D006803 2.1e-104 383.3 365 55.9
FAN14G5059 Fragaria x ananassa HOM05D005464 ORTHO05D006803 4.7e-104 382.1 420 51.2
Nn8g39510 Nelumbo nucifera HOM05D005464 ORTHO05D006803 1.8e-103 380.2 348 58.0
DCAR_021346 Daucus carota HOM05D005464 ORTHO05D006803 2.3e-103 379.8 369 55.0
Solyc06g068160.3 Solanum lycopersicum HOM05D005464 ORTHO05D006803 5.1e-103 378.6 357 56.6
PSO017G6540 Papaver somniferum HOM05D005464 ORTHO05D006803 6.7e-103 378.3 352 57.1
Sopen06g025430 Solanum pennellii HOM05D005464 ORTHO05D006803 1.5e-102 377.1 357 56.6
ClCG07G012450 Citrullus lanatus HOM05D005464 ORTHO05D006803 2.0e-102 376.7 371 54.7
CAN.G1503.8 Capsicum annuum HOM05D005464 ORTHO05D006803 4.4e-102 375.6 364 55.5
Nitab4.5_0006769g0010 Nicotiana tabacum HOM05D005464 ORTHO05D006803 4.4e-102 375.6 363 55.9
Aqoxy7G02293 Aquilegia oxysepala HOM05D005464 ORTHO05D006803 5.7e-102 375.2 366 55.5
PSO170G0224 Papaver somniferum HOM05D005464 ORTHO05D006803 7.4e-102 374.8 354 56.2
PGSC0003DMG400028509 Solanum tuberosum HOM05D005464 ORTHO05D006803 3.7e-101 372.5 354 55.6
AUR62016335 Chenopodium quinoa HOM05D005464 ORTHO05D006803 8.2e-101 371.3 352 54.8
Nitab4.5_0000373g0080 Nicotiana tabacum HOM05D005464 ORTHO05D006803 1.4e-100 370.5 360 55.3
Eucgr.F03878 Eucalyptus grandis HOM05D005464 ORTHO05D006803 1.6e-99 367.1 369 54.2
CsaV3_4G001710 Cucumis sativus L. HOM05D005464 ORTHO05D006803 5.9e-99 365.2 366 54.1
Rhsim12G0191100 Rhododendron simsii HOM05D005464 ORTHO05D006803 5.9e-99 365.2 348 56.6
Hund06557 Selenicereus undatus HOM05D005464 ORTHO05D006803 7.7e-99 364.8 350 55.1
Migut.I00762 Erythranthe guttata HOM05D005464 ORTHO05D006803 1.0e-98 364.4 357 54.1
MSTRG.22747 Avicennia marina HOM05D005464 ORTHO05D006803 3.8e-98 362.5 350 54.9
BcaC08g47570 Brassica carinata HOM05D005464 ORTHO05D006803 8.5e-98 361.3 366 53.0
C06p54250 Brassica napus HOM05D005464 ORTHO05D006803 8.5e-98 361.3 366 53.0
BolC6t40438H Brassica oleracea HOM05D005464 ORTHO05D006803 8.5e-98 361.3 366 53.0
SGA_v2.0_scaffold5G02698 Striga asiatica HOM05D005464 ORTHO05D006803 8.5e-98 361.3 353 54.1
PGR102G0885 Punica granatum HOM05D005464 ORTHO05D006803 1.9e-97 360.1 351 55.0
BcaB02g08721 Brassica carinata HOM05D005464 ORTHO05D006803 2.1e-96 356.7 358 52.5
MBI14_g16402_MAGBIO Magnolia biondii HOM05D005464 ORTHO05D006803 2.1e-96 356.7 363 55.1
MELO3C017863.2 Cucumis melo HOM05D005464 ORTHO05D006803 4.7e-96 355.5 353 55.5
EL10Ac9g21898 Beta vulgaris HOM05D005464 ORTHO05D006803 8.0e-96 354.8 352 54.8
AT1G80090 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 1.0e-95 354.4 358 52.8
Thhalv10019455m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 1.0e-95 354.4 355 52.4
AUR62011516 Chenopodium quinoa HOM05D005464 ORTHO05D006803 1.8e-95 353.6 330 56.4
unitig_0.g1114 Utricularia gibba HOM05D005464 ORTHO05D006803 8.8e-95 351.3 358 52.8
A07p45420 Brassica napus HOM05D005464 ORTHO05D006803 1.5e-94 350.5 366 51.1
vmacro16896 Vaccinium macrocarpon HOM05D005464 ORTHO05D006803 2.2e-93 346.7 377 51.2
Peaxi162Scf00207g00638 Petunia axillaris HOM05D005464 ORTHO05D006803 1.1e-92 344.4 346 54.6
arahy.Tifrunner.gnm1.ann1.JVJR89 Arachis hypogaea HOM05D005464 ORTHO05D006803 2.7e-91 339.7 357 53.5
arahy.Tifrunner.gnm1.ann1.Y6ZEHB Arachis hypogaea HOM05D005464 ORTHO05D006803 2.7e-91 339.7 357 53.5
SHI11227 Sapria himalayana HOM05D005464 ORTHO05D006803 1.0e-90 337.8 342 53.8
Zm00001eb232620 Zea mays HOM05D005464 ORTHO05D006803 1.3e-90 337.4 377 50.1
Dinv30606 Davidia involucrata HOM05D005464 ORTHO05D006803 1.7e-90 337.0 373 50.9
HPP92_016981 Vanilla planifolia HOM05D005464 ORTHO05D006803 6.5e-90 335.1 339 54.3
Os02g0158900 Oryza sativa ssp. japonica HOM05D005464 ORTHO05D006803 1.1e-89 334.3 363 51.5
CARHR074410 Cardamine hirsuta HOM05D005464 ORTHO05D006803 9.4e-89 331.3 321 53.9
Sp5g35710 Schrenkiella parvula HOM05D005464 ORTHO05D006803 1.0e-87 327.8 321 53.3
ATR0800G035 Amborella trichopoda HOM05D005464 ORTHO05D006803 2.6e-86 323.2 361 48.8
BcaC05g25495 Brassica carinata HOM05D005464 ORTHO05D006803 4.8e-85 318.9 172 98.3
BraA07t32046Z Brassica rapa HOM05D005464 ORTHO05D006803 2.4e-84 316.6 366 48.4
Duzib160G0683 Durio zibethinus HOM05D005464 ORTHO05D006803 5.0e-82 308.9 305 55.4
Ciclev10026304m.g Citrus clementina HOM05D005464 ORTHO05D006803 9.4e-81 304.7 249 65.5
Carub.0002s2743 Capsella rubella HOM05D005464 ORTHO05D006803 1.2e-78 297.7 297 52.9
SMO201G0050 Selaginella moellendorffii HOM05D005464 ORTHO05D006803 2.9e-74 283.1 364 44.0
Aa31LG4G370 Aethionema arabicum HOM05D005464 ORTHO05D006803 6.1e-72 275.4 298 50.0
Mapoly0007s0086 Marchantia polymorpha HOM05D005464 ORTHO05D006803 3.4e-70 269.6 369 41.2
Pp3c3_23830 Physcomitrium patens HOM05D005464 ORTHO05D006803 1.5e-65 254.2 350 41.7
QL05p029765 Quercus lobata HOM05D005464 ORTHO05D006803 4.0e-63 246.1 225 61.3
QL05p030112 Quercus lobata HOM05D005464 ORTHO05D006803 4.0e-63 246.1 225 61.3
Oeu045134.1 Olea europaea HOM05D005464 ORTHO05D006803 3.2e-60 236.5 254 52.4
Lj9P500T36 Lonicera japonica HOM05D005464 ORTHO05D006803 5.6e-57 225.7 213 56.8
AagrBONN_evm.TU.Sc2ySwM_368.1642 Anthoceros agrestis HOM05D005464 ORTHO05D006803 9.5e-57 224.9 356 38.2
Atru.chr1.2936 Acer truncatum HOM05D005464 ORTHO05D006803 1.1e-52 211.5 226 53.1
Nn2g12091 Nelumbo nucifera HOM05D000467 ORTHO05D000379 1.1e-52 211.5 233 52.4
PGR102G1999 Punica granatum HOM05D005464 ORTHO05D006803 6.0e-51 205.7 296 42.2
AagrBONN_evm.TU.Sc2ySwM_344.2189 Anthoceros agrestis HOM05D005464 ORTHO05D006803 5.6e-49 199.1 223 49.3
Sc06g0005910 Simmondsia chinensis HOM05D005464 ORTHO05D006803 3.2e-44 183.3 213 47.4
TAR383G0924 Trochodendron aralioides HOM05D005464 ORTHO05D006803 2.7e-43 180.3 119 72.3
Sc06g0005900 Simmondsia chinensis HOM05D005464 ORTHO05D006803 1.3e-42 177.9 136 62.5
HPP92_010901 Vanilla planifolia HOM05D005464 ORTHO05D006803 1.9e-41 174.1 225 44.4
Hma1.2p1_1144F.1_g261310 Hydrangea macrophylla HOM05D005464 ORTHO05D006803 1.1e-39 168.3 218 46.8
VMungo1127G1748 Vigna mungo HOM05D005464 ORTHO05D006803 1.4e-39 167.9 200 48.0
CBR_g24374 Chara braunii HOM05D005464 ORTHO05D006803 3.4e-38 163.3 331 34.1
CSS0011845 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 4.4e-38 162.9 146 58.9
CSS0036664 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 2.9e-37 160.2 146 57.5
Cc04_g04410 Coffea canephora HOM05D005464 ORTHO05D006803 2.4e-36 157.1 281 38.8
AL2G41450 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 8.7e-34 148.7 138 54.3
Pp3c13_16980 Physcomitrium patens HOM05D005464 ORTHO05D006803 1.9e-28 131.0 231 37.7
Psat1g035880 Pisum sativum HOM05D005464 ORTHO05D006803 2.5e-25 120.6 100 62.0
AL2G41440 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 3.1e-23 113.6 129 48.1
TAR383G0332 Trochodendron aralioides HOM05D005464 ORTHO05D006803 3.2e-20 103.6 111 50.5
SEGI_27934 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 1.3e-18 98.2 276 26.8
Psat6g000160 Pisum sativum HOM05D005464 ORTHO05D006803 1.8e-18 97.8 134 44.8
CBR_g38673 Chara braunii HOM05D005464 ORTHO05D006803 1.6e-16 91.3 246 30.9
SEGI_39315 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 6.2e-16 89.4 112 50.0
QL05p030118 Quercus lobata HOM05D005464 ORTHO05D006803 1.1e-15 88.6 130 42.3
QL05p029759 Quercus lobata HOM05D005464 ORTHO05D006803 1.4e-15 88.2 130 42.3
Medtr2g103890 Medicago truncatula HOM05D005464 ORTHO05D006803 6.3e-08 62.8 74 47.3
Nn1g00750 Nelumbo nucifera HOM05D005464 ORTHO05D006803 3.1e-07 60.5 73 45.2
Actinidia03832 Actinidia chinensis HOM05D005426 ORTHO05D006996 3.4e-06 57.0 311 26.0
TPR.G36847 Trifolium pratense HOM05D002177 ORTHO05D002257 7.6e-06 55.8 405 23.7
TWI38G0547 Tripterygium wilfordii HOM05D002177 ORTHO05D002257 7.6e-06 55.8 397 21.7


User provided reference genes

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