Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p09600 Brassica napus HOM05D005683 ORTHO05D006958 3.9e-142 508.1 248 100.0
BolC5t29702H Brassica oleracea HOM05D005683 ORTHO05D006958 1.3e-140 503.1 248 99.6
A06p08000 Brassica napus HOM05D005683 ORTHO05D006958 2.7e-135 485.3 248 97.2
BraA06t23999Z Brassica rapa HOM05D005683 ORTHO05D006958 2.7e-135 485.3 248 97.2
BcaC05g25012 Brassica carinata HOM05D005683 ORTHO05D006958 6.3e-132 474.2 248 94.0
AL1G22470 Arabidopsis lyrata HOM05D005683 ORTHO05D006958 1.1e-120 436.8 252 85.7
CARHR011620 Cardamine hirsuta HOM05D005683 ORTHO05D006958 4.2e-120 434.9 255 85.5
Carub.0001s1101 Capsella rubella HOM05D005683 ORTHO05D006958 2.1e-119 432.6 252 85.7
AT1G11380 Arabidopsis thaliana HOM05D005683 ORTHO05D006958 1.2e-114 416.8 251 82.9
Aa31LG1G3330 Aethionema arabicum HOM05D005683 ORTHO05D006958 9.4e-112 407.1 254 81.5
THA.LOC104818970 Tarenaya hassleriana HOM05D005683 ORTHO05D006958 1.0e-105 387.1 253 74.3
Dinv40458 Davidia involucrata HOM05D005683 ORTHO05D006958 3.2e-83 312.4 226 63.7
QL05p080525 Quercus lobata HOM05D005683 ORTHO05D006958 6.0e-82 308.1 247 63.2
Haze_06612 Corylus avellana HOM05D005683 ORTHO05D006958 2.1e-79 299.7 217 66.8
Eucgr.E03677 Eucalyptus grandis HOM05D005683 ORTHO05D006958 2.8e-79 299.3 206 64.6
GSVIVG01003677001 Vitis vinifera HOM05D005683 ORTHO05D006958 1.4e-78 297.0 228 61.4
Actinidia24049 Actinidia chinensis HOM05D005683 ORTHO05D006958 1.8e-78 296.6 217 64.5
TAR629G3446 Trochodendron aralioides HOM05D005683 ORTHO05D006958 6.8e-78 294.7 240 60.4
Sed0004151 Sechium edule HOM05D005683 ORTHO05D006958 2.0e-77 293.1 210 65.7
Lj2A278T71 Lonicera japonica HOM05D005683 ORTHO05D006958 4.4e-77 292.0 216 59.7
COL.COLO4_31635 Corchorus olitorius HOM05D005683 ORTHO05D006958 5.8e-77 291.6 235 62.1
Manes.17G032900 Manihot esculenta HOM05D005683 ORTHO05D006958 7.5e-77 291.2 223 63.7
ClCG01G022390 Citrullus lanatus HOM05D005683 ORTHO05D006958 9.8e-77 290.8 230 60.4
PGR042G1297 Punica granatum HOM05D005683 ORTHO05D006958 9.8e-77 290.8 232 59.9
Rhsim02G0118200 Rhododendron simsii HOM05D005683 ORTHO05D006958 9.8e-77 290.8 232 59.5
Rhsim02G0118400 Rhododendron simsii HOM05D005683 ORTHO05D006958 9.8e-77 290.8 232 59.5
MELO3C007336.2 Cucumis melo HOM05D005683 ORTHO05D006958 1.7e-76 290.0 225 60.4
SGA_v2.0_scaffold114G31992 Striga asiatica HOM05D005683 ORTHO05D006958 2.2e-76 289.7 232 60.8
TWI38G0326 Tripterygium wilfordii HOM05D005683 ORTHO05D006958 2.2e-76 289.7 238 59.2
CiPaw.10G115800 Carya illinoinensis HOM05D005683 ORTHO05D006958 4.9e-76 288.5 214 65.4
Manes.16G019184 Manihot esculenta HOM05D005683 ORTHO05D006958 1.1e-75 287.3 221 62.0
Gohir.A05G166700 Gossypium hirsutum HOM05D005683 ORTHO05D006958 1.9e-75 286.6 229 63.8
Gohir.D05G169700 Gossypium hirsutum HOM05D005683 ORTHO05D006958 1.9e-75 286.6 229 63.8
arahy.Tifrunner.gnm1.ann1.1EQ2T2 Arachis hypogaea HOM05D005683 ORTHO05D006958 3.2e-75 285.8 246 56.1
Sc17g0006760 Simmondsia chinensis HOM05D005683 ORTHO05D006958 4.1e-75 285.4 217 61.8
arahy.Tifrunner.gnm1.ann1.YX67LP Arachis hypogaea HOM05D005683 ORTHO05D006958 7.0e-75 284.6 246 55.7
AUR62012512 Chenopodium quinoa HOM05D005683 ORTHO05D006958 7.0e-75 284.6 230 58.3
Lj6g0011505 Lotus japonicus HOM05D005683 ORTHO05D006958 7.0e-75 284.6 223 57.4
Potri.011G040100 Populus trichocarpa HOM05D005683 ORTHO05D006958 9.2e-75 284.3 232 59.5
TAR627G0612 Trochodendron aralioides HOM05D005683 ORTHO05D006958 9.2e-75 284.3 240 60.8
Atru.chr10.2035 Acer truncatum HOM05D005683 ORTHO05D006958 1.2e-74 283.9 214 62.6
Gorai.009G174900 Gossypium raimondii HOM05D005683 ORTHO05D006958 1.2e-74 283.9 229 63.3
CsaV3_6G049570 Cucumis sativus L. HOM05D005683 ORTHO05D006958 2.1e-74 283.1 228 58.8
Ciclev10016376m.g Citrus clementina HOM05D005683 ORTHO05D006958 2.7e-74 282.7 216 62.0
MD05G1328900 Malus domestica HOM05D005683 ORTHO05D006958 3.5e-74 282.3 226 61.9
TAR626G0062 Trochodendron aralioides HOM05D005683 ORTHO05D006958 3.5e-74 282.3 214 60.7
Sed0027497 Sechium edule HOM05D005683 ORTHO05D006958 7.8e-74 281.2 212 61.8
Hund23579 Selenicereus undatus HOM05D005683 ORTHO05D006958 1.3e-73 280.4 215 59.5
Lalb_Chr05g0218101 Lupinus albus HOM05D005683 ORTHO05D006958 3.0e-73 279.3 226 57.1
MBI02_g38754_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 3.0e-73 279.3 244 57.0
MD10G1305800 Malus domestica HOM05D005683 ORTHO05D006958 3.9e-73 278.9 249 57.8
FvH4_3g03670 Fragaria vesca HOM05D005683 ORTHO05D006958 6.6e-73 278.1 227 59.0
FAN11G3671 Fragaria x ananassa HOM05D005683 ORTHO05D006958 6.6e-73 278.1 227 59.0
FAN16G0586 Fragaria x ananassa HOM05D005683 ORTHO05D006958 6.6e-73 278.1 227 59.0
Prupe.4G033900 Prunus persica HOM05D005683 ORTHO05D006958 6.6e-73 278.1 227 60.8
Cpa.g.sc27.157 Carica papaya HOM05D005683 ORTHO05D006958 1.1e-72 277.3 234 59.0
CiPaw.09G156400 Carya illinoinensis HOM05D005683 ORTHO05D006958 2.5e-72 276.2 225 60.0
Medtr2g011490 Medicago truncatula HOM05D005683 ORTHO05D006958 4.3e-72 275.4 223 59.2
HanXRQChr15g0482541 Helianthus annuus HOM05D005683 ORTHO05D006958 5.6e-72 275.0 223 60.1
Glyma.13G247700 Glycine max HOM05D005683 ORTHO05D006958 1.6e-71 273.5 220 57.7
Lsat_1_v5_gn_7_20320 Lactuca sativa HOM05D005683 ORTHO05D006958 2.8e-71 272.7 249 55.0
Oeu021580.1 Olea europaea HOM05D005683 ORTHO05D006958 2.8e-71 272.7 221 56.1
Nn1g03823 Nelumbo nucifera HOM05D005683 ORTHO05D006958 4.7e-71 271.9 251 55.0
FAN21G2210 Fragaria x ananassa HOM05D005683 ORTHO05D006958 6.2e-71 271.6 227 58.6
Cc02_g12200 Coffea canephora HOM05D005683 ORTHO05D006958 1.8e-70 270.0 223 57.4
FAN25G1197 Fragaria x ananassa HOM05D005683 ORTHO05D006958 1.8e-70 270.0 227 58.6
Gohir.A10G019100 Gossypium hirsutum HOM05D005683 ORTHO05D006958 1.8e-70 270.0 212 62.3
TPR.G36735 Trifolium pratense HOM05D005683 ORTHO05D006958 2.3e-70 269.6 218 59.2
Ah.09g236340 Amaranthus hybridus HOM05D005683 ORTHO05D006958 3.1e-70 269.2 241 54.8
VMungo0251G1023 Vigna mungo HOM05D005683 ORTHO05D006958 3.1e-70 269.2 218 56.0
Sopen02g024190 Solanum pennellii HOM05D005683 ORTHO05D006958 5.2e-70 268.5 215 60.0
Phvul.006G193600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 6.8e-70 268.1 227 57.3
PGSC0003DMG400022348 Solanum tuberosum HOM05D005683 ORTHO05D006958 6.8e-70 268.1 230 58.7
VMungo0540G1177 Vigna mungo HOM05D005683 ORTHO05D006958 6.8e-70 268.1 221 56.6
Nitab4.5_0000649g0210 Nicotiana tabacum HOM05D005683 ORTHO05D006958 8.9e-70 267.7 229 60.3
Potri.004G026700 Populus trichocarpa HOM05D005683 ORTHO05D006958 8.9e-70 267.7 226 56.6
Solyc02g079390.4 Solanum lycopersicum HOM05D005683 ORTHO05D006958 8.9e-70 267.7 215 59.5
Medtr4g091550 Medicago truncatula HOM05D005683 ORTHO05D006958 1.2e-69 267.3 216 58.3
Ca_00226_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 1.5e-69 266.9 222 58.1
DCAR_004160 Daucus carota HOM05D005683 ORTHO05D006958 2.0e-69 266.5 229 57.6
CANSAT56G4448 Cannabis sativa HOM05D005683 ORTHO05D006958 3.4e-69 265.8 231 57.1
Gorai.011G021200 Gossypium raimondii HOM05D005683 ORTHO05D006958 4.4e-69 265.4 212 61.8
TPR.G15376 Trifolium pratense HOM05D005683 ORTHO05D006958 4.4e-69 265.4 230 54.8
Gohir.D10G020000 Gossypium hirsutum HOM05D005683 ORTHO05D006958 5.8e-69 265.0 212 61.3
Glyma.15G066100 Glycine max HOM05D005683 ORTHO05D006958 7.5e-69 264.6 225 55.6
PSO541G3127 Papaver somniferum HOM05D005683 ORTHO05D006958 7.5e-69 264.6 230 55.2
Phvul.002G220600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 7.5e-69 264.6 236 55.1
vmacro15855 Vaccinium macrocarpon HOM05D005683 ORTHO05D006958 7.5e-69 264.6 301 47.2
Hund21293 Selenicereus undatus HOM05D005683 ORTHO05D006958 2.2e-68 263.1 222 56.8
PSO675G7592 Papaver somniferum HOM05D005683 ORTHO05D006958 2.9e-68 262.7 233 54.5
Lalb_Chr18g0060021 Lupinus albus HOM05D005683 ORTHO05D006958 1.4e-67 260.4 232 53.4
Lj1A1216T22 Lonicera japonica HOM05D005683 ORTHO05D006958 1.9e-67 260.0 213 59.2
Thecc.06G202400 Theobroma cacao HOM05D005683 ORTHO05D006958 2.4e-67 259.6 219 59.4
MSTRG.7277 Avicennia marina HOM05D005683 ORTHO05D006958 3.2e-67 259.2 235 54.9
Ca_18471_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 3.2e-67 259.2 230 55.7
Peaxi162Scf01035g00114 Petunia axillaris HOM05D005683 ORTHO05D006958 9.2e-67 257.7 239 56.1
RcHm_v2.0_Chr5g0005711 Rosa chinensis HOM05D005683 ORTHO05D006958 9.2e-67 257.7 223 57.0
Migut.H01529 Erythranthe guttata HOM05D005683 ORTHO05D006958 1.6e-66 256.9 216 57.4
Actinidia11820 Actinidia chinensis HOM05D003506 ORTHO05D006958 1.3e-65 253.8 174 66.1
Nitab4.5_0005620g0030 Nicotiana tabacum HOM05D005683 ORTHO05D006958 2.3e-65 253.1 251 54.6
ECA236G4035 Erigeron canadensis HOM05D005683 ORTHO05D006958 9.5e-64 247.7 249 51.4
MBI02_g46153_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 1.2e-63 247.3 244 52.9
Lalb_Chr09g0327231 Lupinus albus HOM05D005683 ORTHO05D006958 2.1e-63 246.5 188 58.0
CAN.G424.37 Capsicum annuum HOM05D005683 ORTHO05D006958 2.4e-62 243.0 202 59.9
Lj4g0024466 Lotus japonicus HOM05D005683 ORTHO05D006958 5.2e-62 241.9 217 53.9
Sp1g10010 Schrenkiella parvula HOM05D005683 ORTHO05D006958 3.4e-61 239.2 251 55.4
arahy.Tifrunner.gnm1.ann1.NC80VA Arachis hypogaea HOM05D005683 ORTHO05D006958 1.7e-60 236.9 221 52.5
Migut.M01228 Erythranthe guttata HOM05D005683 ORTHO05D006958 3.8e-60 235.7 204 53.9
Glyma.07G188900 Glycine max HOM05D005683 ORTHO05D006958 8.4e-60 234.6 227 50.7
arahy.Tifrunner.gnm1.ann1.B3SD72 Arachis hypogaea HOM05D005683 ORTHO05D006958 7.1e-59 231.5 221 52.5
Zm00001eb323790 Zea mays HOM05D005683 ORTHO05D006958 2.7e-58 229.6 208 51.9
unitig_748.g7566 Utricularia gibba HOM05D005683 ORTHO05D006958 4.6e-58 228.8 228 52.2
HPP92_000912 Vanilla planifolia HOM05D005683 ORTHO05D006958 1.0e-57 227.6 209 52.2
EL10Ac8g19981 Beta vulgaris HOM05D005683 ORTHO05D006958 4.4e-53 212.2 235 46.0
ATR1132G083 Amborella trichopoda HOM05D005683 ORTHO05D006958 1.7e-49 200.3 145 58.6
CDE02G0678 Ceratophyllum demersum HOM05D005683 ORTHO05D006958 2.3e-49 199.9 207 48.3
Duzib235G0662 Durio zibethinus HOM05D005683 ORTHO05D006958 3.9e-49 199.1 252 45.6
Duzib192G0920 Durio zibethinus HOM05D005683 ORTHO05D006958 5.6e-48 195.3 217 47.9
AUR62014686 Chenopodium quinoa HOM05D005683 ORTHO05D006958 1.5e-45 187.2 196 45.9
TAR629G2478 Trochodendron aralioides HOM05D005683 ORTHO05D006958 6.0e-42 175.3 154 56.5
Glyma.08G060400 Glycine max HOM05D005683 ORTHO05D006958 7.4e-40 168.3 143 53.1
Psat1g209480 Pisum sativum HOM05D005683 ORTHO05D006958 6.2e-39 165.2 129 58.1
CSS0013005 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 6.0e-34 148.7 145 54.5
Pp3c18_19760 Physcomitrium patens HOM05D005683 ORTHO05D006958 7.9e-34 148.3 154 46.1
Pp3c21_1800 Physcomitrium patens HOM05D005683 ORTHO05D006958 6.7e-33 145.2 169 43.8
CSS0013141 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 2.1e-31 140.2 168 46.4
CDE05G0673 Ceratophyllum demersum HOM05D005683 ORTHO05D006958 3.8e-28 129.4 141 44.0
Sp2g25370 Schrenkiella parvula HOM05D005683 ORTHO05D006958 4.9e-28 129.0 82 87.8
SGA_v2.0_scaffold42G16089 Striga asiatica HOM05D005683 ORTHO05D006958 2.4e-22 110.2 147 42.9
Prupe.5G244100 Prunus persica HOM05D005683 ORTHO05D006958 4.6e-18 95.9 79 51.9
BcaB05g23633 Brassica carinata HOM05D001086 ORTHO05D001112 7.4e-16 88.6 92 56.5
Psat1g209520 Pisum sativum HOM05D005683 ORTHO05D006958 3.1e-14 83.2 76 59.2
Mapoly0084s0076 Marchantia polymorpha HOM05D002715 ORTHO05D002996 3.8e-12 76.3 148 31.8
CBR_g50374 Chara braunii HOM05D005683 ORTHO05D006958 3.2e-11 73.2 194 31.4
HanXRQChr09g0252171 Helianthus annuus HOM05D002715 ORTHO05D002996 2.3e-09 67.0 145 33.1
CSS0030399 Camellia sinensis var. sinensis HOM05D002715 ORTHO05D002996 2.6e-08 63.5 139 29.5
DCAR_028897 Daucus carota HOM05D002715 ORTHO05D002996 4.4e-08 62.8 138 31.2
HanXRQChr07g0203561 Helianthus annuus HOM05D002715 ORTHO05D002996 4.4e-08 62.8 142 31.7
Glyma.11G234400 Glycine max HOM05D002715 ORTHO05D002996 5.7e-08 62.4 132 32.6
SMO230G0095 Selaginella moellendorffii HOM05D002715 ORTHO05D002996 5.7e-08 62.4 140 30.7
Os01g0825900 Oryza sativa ssp. japonica HOM05D002715 ORTHO05D002996 7.4e-08 62.0 144 31.9
arahy.Tifrunner.gnm1.ann1.4CZE72 Arachis hypogaea HOM05D002715 ORTHO05D002996 1.3e-07 61.2 132 31.8
arahy.Tifrunner.gnm1.ann1.SMM8KX Arachis hypogaea HOM05D002715 ORTHO05D002996 1.3e-07 61.2 132 31.8
VMungo0331G1720 Vigna mungo HOM05D002715 ORTHO05D002996 1.3e-07 61.2 149 28.2
vmacro08919 Vaccinium macrocarpon HOM05D002715 ORTHO05D002996 1.7e-07 60.8 142 30.3
HPP92_012010 Vanilla planifolia HOM05D002715 ORTHO05D002996 1.7e-07 60.8 143 28.7
Phvul.008G219400 Phaseolus vulgaris HOM05D002715 ORTHO05D002996 8.2e-07 58.5 132 31.1
SEGI_20323 Sequoiadendron giganteum HOM05D002715 ORTHO05D002996 8.2e-07 58.5 140 28.6
Ah.08g209890 Amaranthus hybridus HOM05D002715 ORTHO05D002996 1.1e-06 58.2 147 29.3
VMungo1383G2327 Vigna mungo HOM05D002715 ORTHO05D002996 1.1e-06 58.2 132 31.1
Zm00001eb351970 Zea mays HOM05D002715 ORTHO05D002996 1.1e-06 58.2 146 28.8
Glyma.18G022600 Glycine max HOM05D002715 ORTHO05D002996 1.8e-06 57.4 132 31.1
Phvul.001G247800 Phaseolus vulgaris HOM05D002715 ORTHO05D002996 1.8e-06 57.4 132 31.8
VMungo0647G0735 Vigna mungo HOM05D002715 ORTHO05D002996 1.8e-06 57.4 132 30.3
Lalb_Chr17g0347021 Lupinus albus HOM05D002715 ORTHO05D002996 3.1e-06 56.6 178 29.2


User provided reference genes

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