Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 0.0e+00 1458.7 736 100.0
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 0.0e+00 1444.1 736 98.9
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 0.0e+00 1437.6 736 98.5
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 0.0e+00 1370.1 736 93.8
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 0.0e+00 1290.8 738 89.3
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 0.0e+00 1289.2 741 88.4
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 0.0e+00 1280.8 739 88.8
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 0.0e+00 1269.6 738 88.2
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 0.0e+00 1248.8 739 87.8
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 0.0e+00 1243.4 759 85.0
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 0.0e+00 1236.9 739 87.3
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 0.0e+00 1207.2 738 84.0
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 0.0e+00 1193.3 751 83.5
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 0.0e+00 1190.6 754 83.4
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 0.0e+00 1182.5 740 85.0
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 0.0e+00 1156.0 741 80.3
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 4.1e-304 1047.7 618 88.5
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.7e-294 1015.8 740 71.4
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 2.3e-291 1005.4 740 70.3
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 2.4e-288 995.3 722 70.5
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.6e-287 992.6 688 73.4
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 1.6e-287 992.6 737 68.1
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 3.5e-287 991.5 706 71.4
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 4.5e-287 991.1 768 67.4
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 7.7e-287 990.3 714 69.9
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 4.2e-285 984.6 707 69.9
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 7.2e-285 983.8 740 68.4
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 1.4e-283 979.5 731 68.5
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 2.6e-282 975.3 737 67.8
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 1.6e-279 966.1 737 67.0
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 1.3e-278 963.0 712 68.7
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 3.8e-278 961.4 730 67.3
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 2.5e-277 958.7 707 69.9
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 4.2e-277 958.0 712 68.3
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 7.2e-277 957.2 743 67.6
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 6.1e-276 954.1 742 66.3
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.4e-275 953.0 712 67.7
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 1.4e-275 953.0 725 67.6
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 8.9e-275 950.3 719 67.9
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 2.6e-274 948.7 723 68.6
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 4.4e-274 948.0 714 67.2
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 3.7e-273 944.9 743 66.1
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.1e-272 941.4 720 67.6
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 2.0e-271 939.1 715 67.7
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.7e-271 938.7 702 67.5
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.0e-270 936.8 743 65.1
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 9.5e-269 930.2 725 66.6
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 4.7e-268 927.9 713 68.3
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 4.0e-267 924.9 723 66.5
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 8.9e-267 923.7 738 65.0
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 1.5e-266 922.9 738 65.2
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 3.4e-266 921.8 756 64.6
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 1.3e-265 919.8 702 66.5
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.9e-264 916.0 660 71.1
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 2.7e-263 912.1 717 65.1
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 2.7e-263 912.1 744 64.2
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 3.5e-263 911.8 746 64.5
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 4.6e-263 911.4 727 64.9
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 2.3e-262 909.1 733 63.6
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 7.3e-261 904.0 707 65.2
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 7.3e-261 904.0 708 65.4
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.2e-260 903.3 713 64.4
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 1.6e-260 902.9 702 66.7
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 1.6e-260 902.9 720 65.6
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 1.8e-259 899.4 716 65.5
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 1.8e-259 899.4 707 64.9
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 5.2e-259 897.9 707 64.6
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.2e-258 896.7 726 64.3
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 1.5e-258 896.3 730 64.1
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 2.0e-258 896.0 673 69.7
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 2.6e-258 895.6 709 65.0
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 4.4e-258 894.8 732 63.9
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 5.8e-258 894.4 723 65.0
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 7.5e-258 894.0 725 64.4
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 2.2e-257 892.5 708 65.4
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 3.7e-257 891.7 795 60.8
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 4.9e-257 891.3 721 63.7
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 4.9e-257 891.3 712 64.0
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 6.4e-257 891.0 726 64.3
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 8.3e-257 890.6 729 62.4
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 8.3e-257 890.6 736 63.2
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 2.4e-256 889.0 752 62.0
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 5.4e-256 887.9 714 65.8
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 3.5e-255 885.2 702 65.2
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 1.1e-253 880.2 702 64.7
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 1.5e-253 879.8 721 63.5
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 7.3e-253 877.5 681 66.7
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 9.5e-253 877.1 727 63.5
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 3.6e-252 875.2 726 63.4
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 5.8e-250 867.8 735 62.3
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 4.9e-249 864.8 703 64.0
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.1e-248 863.6 703 63.7
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 3.2e-248 862.1 686 64.1
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 4.1e-248 861.7 706 62.0
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 7.1e-248 860.9 710 62.7
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 2.7e-247 859.0 731 61.0
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 1.5e-245 853.2 705 62.1
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 2.5e-245 852.4 736 60.1
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 6.2e-244 847.8 701 63.1
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 1.1e-240 837.0 725 60.8
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 1.9e-240 836.3 751 59.7
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 4.6e-239 831.6 702 62.3
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 1.3e-238 830.1 719 61.9
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 1.1e-237 827.0 722 59.7
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 1.1e-237 827.0 725 59.3
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 4.8e-236 821.6 734 58.6
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 2.4e-235 819.3 730 59.3
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.3e-233 813.5 740 58.1
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 2.2e-233 812.8 677 62.5
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 8.4e-233 810.8 641 65.8
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 2.1e-231 806.2 705 60.4
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.7e-231 805.8 706 59.8
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.7e-231 805.8 703 59.9
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.1e-227 793.9 738 57.2
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 2.6e-218 762.7 711 57.1
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 8.4e-217 757.7 585 68.2
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 1.1e-213 747.3 615 65.0
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 4.3e-213 745.3 720 55.8
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 1.9e-208 729.9 651 60.5
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 2.3e-206 723.0 730 53.0
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 2.5e-197 693.0 710 54.4
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.5e-194 683.7 548 66.8
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.5e-192 675.2 571 63.2
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 1.3e-185 654.1 717 50.2
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.1e-184 651.0 579 61.5
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.1e-181 641.0 579 59.6
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 7.0e-179 631.7 650 52.5
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 3.4e-173 612.8 699 49.6
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 2.2e-172 610.1 500 63.4
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 1.0e-161 574.7 728 45.6
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 3.6e-143 513.1 323 82.4
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 1.9e-139 500.7 877 38.0
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.6e-138 497.7 620 48.9
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 6.8e-134 482.3 332 71.7
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 1.4e-118 431.4 447 55.0
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 1.8e-102 377.9 289 70.2
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.3e-100 371.7 258 72.1
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.5e-96 357.5 265 69.4
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 1.0e-89 335.5 372 49.5
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 2.1e-82 311.2 367 53.1
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 6.9e-78 296.2 328 54.6
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 2.6e-69 267.7 503 35.4
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 1.3e-55 222.2 547 33.6
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 5.0e-52 210.3 132 79.5
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 3.4e-48 197.6 126 78.6
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 3.5e-45 187.6 125 69.6
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.0e-44 186.0 186 53.2
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 4.4e-40 170.6 123 73.2
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 6.6e-36 156.8 139 60.4
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 8.6e-28 129.8 177 41.8
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 3.3e-27 127.9 178 42.7
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 8.3e-23 113.2 321 31.5
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.8e-17 95.5 129 45.7
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 6.4e-15 87.0 58 69.0
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 1.4e-14 85.9 54 70.4
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.4e-14 84.0 55 65.5
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.4e-14 84.0 55 65.5
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 2.7e-13 81.6 86 53.5
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.2e-10 72.8 64 50.0
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 6.2e-10 70.5 58 65.5
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 1.8e-09 68.9 84 40.5
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 7.6e-08 63.5 37 83.8


User provided reference genes

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