Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 1.3e-73 279.6 137 100.0
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 1.6e-73 279.3 137 99.3
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 1.2e-68 263.1 132 97.0
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 1.2e-68 263.1 132 97.0
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 1.2e-68 263.1 132 97.0
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 8.7e-67 256.9 132 93.9
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 8.7e-67 256.9 132 93.9
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 8.7e-67 256.9 132 93.9
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 1.1e-66 256.5 132 93.2
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 1.1e-66 256.5 132 93.2
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 1.1e-66 256.5 132 93.2
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 2.5e-66 255.4 132 93.2
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 1.6e-65 252.7 132 91.7
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 1.4e-64 249.6 132 90.9
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 1.2e-63 246.5 132 90.9
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 2.6e-63 245.4 132 88.6
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 5.8e-63 244.2 132 87.1
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 9.9e-63 243.4 136 88.2
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 2.9e-62 241.9 132 87.1
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 3.8e-62 241.5 132 87.1
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 4.9e-62 241.1 132 86.4
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 6.4e-62 240.7 131 87.0
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 8.4e-62 240.4 132 87.1
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 1.1e-61 240.0 132 85.6
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.9e-61 239.2 132 86.4
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 1.9e-61 239.2 132 87.1
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 3.2e-61 238.4 132 84.8
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 3.2e-61 238.4 132 86.4
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 4.2e-61 238.0 132 87.9
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 4.2e-61 238.0 132 85.6
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 4.2e-61 238.0 132 87.1
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 5.5e-61 237.7 132 83.3
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 7.1e-61 237.3 132 86.4
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 7.1e-61 237.3 132 84.8
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 9.3e-61 236.9 132 86.4
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 9.3e-61 236.9 132 85.6
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 9.3e-61 236.9 132 85.6
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 9.3e-61 236.9 132 85.6
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 1.2e-60 236.5 132 85.6
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.2e-60 236.5 132 85.6
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 1.6e-60 236.1 132 84.1
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 1.6e-60 236.1 132 84.1
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 2.1e-60 235.7 132 86.4
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 2.1e-60 235.7 132 85.6
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 2.1e-60 235.7 132 84.8
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 2.7e-60 235.3 132 87.1
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 2.7e-60 235.3 132 85.6
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 2.7e-60 235.3 132 85.6
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 3.5e-60 235.0 132 85.6
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 4.6e-60 234.6 132 84.1
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 4.6e-60 234.6 132 85.6
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 6.0e-60 234.2 132 84.8
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 7.9e-60 233.8 132 84.8
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 7.9e-60 233.8 132 84.8
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 7.9e-60 233.8 132 84.1
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 7.9e-60 233.8 132 86.4
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 7.9e-60 233.8 132 84.8
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 7.9e-60 233.8 132 84.1
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 7.9e-60 233.8 132 84.1
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 1.0e-59 233.4 132 86.4
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.0e-59 233.4 132 83.3
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.8e-59 232.6 132 83.3
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.8e-59 232.6 132 83.3
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 1.8e-59 232.6 132 83.3
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 1.8e-59 232.6 132 84.1
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 2.3e-59 232.3 132 84.1
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 2.3e-59 232.3 132 83.3
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 3.0e-59 231.9 132 84.8
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 3.9e-59 231.5 132 83.3
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 5.1e-59 231.1 132 83.3
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 6.7e-59 230.7 132 82.6
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 6.7e-59 230.7 132 82.6
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 6.7e-59 230.7 132 82.6
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 6.7e-59 230.7 132 83.3
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 8.7e-59 230.3 132 84.8
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 8.7e-59 230.3 132 83.3
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 8.7e-59 230.3 132 83.3
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 8.7e-59 230.3 132 84.1
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 1.1e-58 229.9 132 81.8
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 1.5e-58 229.6 132 83.3
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.9e-58 229.2 132 83.3
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.9e-58 229.2 132 83.3
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 3.3e-58 228.4 132 81.8
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 3.3e-58 228.4 132 81.1
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 3.3e-58 228.4 132 81.1
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 4.3e-58 228.0 132 81.8
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 5.6e-58 227.6 132 82.6
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 5.6e-58 227.6 132 82.6
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 5.6e-58 227.6 132 82.6
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 5.6e-58 227.6 132 82.6
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 9.6e-58 226.9 132 82.6
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 1.3e-57 226.5 130 81.5
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 1.3e-57 226.5 132 81.8
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 1.3e-57 226.5 132 83.3
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 1.6e-57 226.1 132 81.8
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 2.1e-57 225.7 132 82.6
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 2.8e-57 225.3 132 81.8
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 2.8e-57 225.3 132 81.1
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 3.7e-57 224.9 132 81.8
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 4.8e-57 224.6 132 81.1
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 4.8e-57 224.6 132 81.1
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 6.2e-57 224.2 132 81.8
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 8.2e-57 223.8 132 79.5
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 1.1e-56 223.4 132 80.3
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 1.1e-56 223.4 132 81.8
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 1.8e-56 222.6 141 78.0
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 2.4e-56 222.2 132 80.3
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 1.5e-55 219.5 132 80.3
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 2.0e-55 219.2 132 79.5
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 2.6e-55 218.8 132 78.8
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 2.9e-54 215.3 132 75.8
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 1.0e-51 206.8 104 99.0
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 6.7e-51 204.1 103 99.0
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 6.7e-51 204.1 103 99.0
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.5e-50 203.0 132 71.2
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.5e-50 203.0 132 71.2
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 7.4e-50 200.7 125 77.6
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.3e-49 199.9 118 78.8
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 2.2e-49 199.1 132 68.9
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.8e-49 198.7 118 78.0
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 4.8e-49 198.0 132 68.2
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 8.2e-49 197.2 132 67.4
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 4.1e-48 194.9 110 85.5
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 1.4e-45 186.4 94 100.0
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 2.3e-43 179.1 99 84.8
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 2.0e-39 166.0 148 63.5
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 3.6e-36 155.2 132 56.8
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 7.9e-36 154.1 105 81.0
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 1.3e-33 146.7 132 51.5
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 8.2e-33 144.1 94 74.5
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 1.2e-31 140.2 124 53.2
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 2.5e-29 132.5 78 84.6
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 1.8e-27 126.3 123 48.8
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 9.7e-26 120.6 60 90.0
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 5.5e-21 104.8 81 67.9
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 2.6e-18 95.9 62 74.2
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 3.4e-18 95.5 83 50.6
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 9.7e-18 94.0 61 73.8
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 1.7e-17 93.2 46 87.0
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 1.8e-16 89.7 44 88.6
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 2.2e-14 82.8 44 77.3
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 9.4e-13 77.4 44 79.5
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 2.3e-11 72.8 35 85.7
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 3.0e-11 72.4 36 86.1


User provided reference genes

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