Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p30330 Brassica napus HOM05D004241 ORTHO05D026893 1.7e-41 172.2 85 100.0
BolC4t24566H Brassica oleracea HOM05D004241 ORTHO05D026893 1.7e-41 172.2 85 100.0
BcaB01g00414 Brassica carinata HOM05D004241 ORTHO05D006031 6.2e-23 110.5 74 74.3
BcaB01g00474 Brassica carinata HOM05D004241 ORTHO05D006031 6.2e-23 110.5 74 74.3
BcaC09g50106 Brassica carinata HOM05D004241 ORTHO05D006031 6.2e-23 110.5 74 74.3
BcaNung00368 Brassica carinata HOM05D004241 ORTHO05D006031 6.2e-23 110.5 74 74.3
A09p44970 Brassica napus HOM05D004241 ORTHO05D006031 6.2e-23 110.5 74 74.3
C08p27050 Brassica napus HOM05D004241 ORTHO05D006031 6.2e-23 110.5 74 74.3
BolC1t02821H Brassica oleracea HOM05D004241 ORTHO05D006031 6.2e-23 110.5 74 74.3
BolC8t50320H Brassica oleracea HOM05D004241 ORTHO05D006031 6.2e-23 110.5 74 74.3
BraA01t02235Z Brassica rapa HOM05D004241 ORTHO05D006031 6.2e-23 110.5 74 74.3
BraA09t39957Z Brassica rapa HOM05D004241 ORTHO05D006031 6.2e-23 110.5 74 74.3
CiPaw.09G211300 Carya illinoinensis HOM05D004241 ORTHO05D006031 6.2e-23 110.5 74 74.3
Ciclev10011985m.g Citrus clementina HOM05D004241 ORTHO05D006031 6.2e-23 110.5 74 74.3
DCAR_015394 Daucus carota HOM05D004241 ORTHO05D006031 6.2e-23 110.5 74 74.3
Thhalv10010408m.g Eutrema salsugineum HOM05D004241 ORTHO05D006031 6.2e-23 110.5 74 74.3
Hma1.2p1_0362F.1_g136490 Hydrangea macrophylla HOM05D004241 ORTHO05D006031 6.2e-23 110.5 74 74.3
Prupe.6G280100 Prunus persica HOM05D004241 ORTHO05D006031 6.2e-23 110.5 74 74.3
PGR031G0770 Punica granatum HOM05D004241 ORTHO05D006031 6.2e-23 110.5 74 74.3
Sp5g10450 Schrenkiella parvula HOM05D004241 ORTHO05D006031 6.2e-23 110.5 74 74.3
CAN.G283.14 Capsicum annuum HOM05D004241 ORTHO05D006031 8.2e-23 110.2 74 74.3
Dinv13159 Davidia involucrata HOM05D004241 ORTHO05D006031 8.2e-23 110.2 74 73.0
Peaxi162Scf00890g00119 Petunia axillaris HOM05D004241 ORTHO05D006031 8.2e-23 110.2 74 73.0
ClCG04G006920 Citrullus lanatus HOM05D004241 ORTHO05D006031 1.1e-22 109.8 74 74.3
Eucgr.A00535 Eucalyptus grandis HOM05D004241 ORTHO05D006031 1.1e-22 109.8 74 73.0
Nitab4.5_0000261g0130 Nicotiana tabacum HOM05D004241 ORTHO05D006031 1.1e-22 109.8 74 73.0
Nitab4.5_0008676g0010 Nicotiana tabacum HOM05D004241 ORTHO05D006031 1.1e-22 109.8 74 73.0
Sc07g0006700 Simmondsia chinensis HOM05D004241 ORTHO05D006031 1.1e-22 109.8 74 73.0
Sopen09g007610 Solanum pennellii HOM05D004241 ORTHO05D006031 1.1e-22 109.8 74 73.0
PGSC0003DMG400008481 Solanum tuberosum HOM05D004241 ORTHO05D006031 1.1e-22 109.8 74 73.0
AL5G32280 Arabidopsis lyrata HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 73.0
AT3G51820 Arabidopsis thaliana HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 73.0
EL10Ac5g12540 Beta vulgaris HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 74.3
CSS0018345 Camellia sinensis var. sinensis HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 73.0
CANSAT35G0589 Cannabis sativa HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 73.0
Carub.0005s1817 Capsella rubella HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 73.0
CARHR161450 Cardamine hirsuta HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 73.0
Ca_07660_v3 Cicer arietinum L. HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 73.0
Cc06_g01120 Coffea canephora HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 73.0
MELO3C026000.2 Cucumis melo HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 73.0
CsaV3_4G026340 Cucumis sativus L. HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 73.0
Glyma.07G152300 Glycine max HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 73.0
Glyma.16G098000 Glycine max HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 73.0
Glyma.18G203400 Glycine max HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 73.0
Lj1g0026131 Lotus japonicus HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 73.0
MD00G1061800 Malus domestica HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 73.0
Psat3g126440 Pisum sativum HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 73.0
RcHm_v2.0_Chr3g0462631 Rosa chinensis HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 73.0
Sed0025380 Sechium edule HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 73.0
THA.LOC104805975 Tarenaya hassleriana HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 73.0
TAR636G3470 Trochodendron aralioides HOM05D004241 ORTHO05D006031 1.4e-22 109.4 74 73.0
Actinidia05359 Actinidia chinensis HOM05D004241 ORTHO05D006031 1.8e-22 109.0 74 73.0
arahy.Tifrunner.gnm1.ann1.8A66NB Arachis hypogaea HOM05D004241 ORTHO05D006031 1.8e-22 109.0 74 73.0
arahy.Tifrunner.gnm1.ann1.Z8S8NK Arachis hypogaea HOM05D004241 ORTHO05D006031 1.8e-22 109.0 74 73.0
HanXRQChr06g0182231 Helianthus annuus HOM05D004241 ORTHO05D006031 1.8e-22 109.0 74 74.3
Manes.09G106900 Manihot esculenta HOM05D004241 ORTHO05D006031 1.8e-22 109.0 74 73.0
Medtr7g069210 Medicago truncatula HOM05D004241 ORTHO05D006031 1.8e-22 109.0 74 71.6
Nn2g13169 Nelumbo nucifera HOM05D004241 ORTHO05D006031 1.8e-22 109.0 74 73.0
Phvul.008G096500 Phaseolus vulgaris HOM05D004241 ORTHO05D006031 1.8e-22 109.0 74 73.0
Potri.006G102100 Populus trichocarpa HOM05D004241 ORTHO05D006031 1.8e-22 109.0 74 73.0
Sabra06G0078400 Salix brachista HOM05D004241 ORTHO05D006031 1.8e-22 109.0 74 73.0
TPR.G35446 Trifolium pratense HOM05D004241 ORTHO05D006031 1.8e-22 109.0 74 71.6
VMungo1383G0980 Vigna mungo HOM05D004241 ORTHO05D006031 1.8e-22 109.0 74 73.0
Atru.chr8.2269 Acer truncatum HOM05D004241 ORTHO05D006031 2.4e-22 108.6 74 73.0
Aqoxy2G00847 Aquilegia oxysepala HOM05D004241 ORTHO05D006031 2.4e-22 108.6 74 71.6
Cfa017182 Carpinus fangiana HOM05D004241 ORTHO05D006031 2.4e-22 108.6 74 70.3
ECA236G0379 Erigeron canadensis HOM05D000031 ORTHO05D006031 2.4e-22 108.6 74 73.0
Rhsim04G0126500 Rhododendron simsii HOM05D004241 ORTHO05D006031 2.4e-22 108.6 74 71.6
MSTRG.18996 Avicennia marina HOM05D004241 ORTHO05D006031 3.1e-22 108.2 74 71.6
CDE04G1685 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 3.1e-22 108.2 74 70.3
FvH4_6g11190 Fragaria vesca HOM05D004241 ORTHO05D006031 3.1e-22 108.2 74 73.0
FAN02G4369 Fragaria x ananassa HOM05D004241 ORTHO05D006031 3.1e-22 108.2 74 73.0
FAN05G3727 Fragaria x ananassa HOM05D004241 ORTHO05D006031 3.1e-22 108.2 74 73.0
FAN09G0733 Fragaria x ananassa HOM05D004241 ORTHO05D006031 3.1e-22 108.2 74 73.0
FAN14G2181 Fragaria x ananassa HOM05D004241 ORTHO05D006031 3.1e-22 108.2 74 73.0
Gohir.A04G092900 Gossypium hirsutum HOM05D004241 ORTHO05D006031 3.1e-22 108.2 74 73.0
Gohir.D04G132200 Gossypium hirsutum HOM05D004241 ORTHO05D006031 3.1e-22 108.2 74 73.0
Lalb_Chr19g0124421 Lupinus albus HOM05D004241 ORTHO05D006031 3.1e-22 108.2 74 71.6
CDE08G0537 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 4.0e-22 107.8 74 68.9
Migut.J00141 Erythranthe guttata HOM05D004241 ORTHO05D006031 4.0e-22 107.8 74 71.6
Lj3A950T42 Lonicera japonica HOM05D004241 ORTHO05D006031 4.0e-22 107.8 74 71.6
MBI15_g19417_MAGBIO Magnolia biondii HOM05D004241 ORTHO05D006031 4.0e-22 107.8 74 73.0
Oeu017800.1 Olea europaea HOM05D004241 ORTHO05D006031 4.0e-22 107.8 74 71.6
Hund14874 Selenicereus undatus HOM05D004241 ORTHO05D006031 4.0e-22 107.8 74 70.3
TAR633G2528 Trochodendron aralioides HOM05D004241 ORTHO05D006031 4.0e-22 107.8 74 71.6
CiPaw.10G157700 Carya illinoinensis HOM05D004241 ORTHO05D006031 5.3e-22 107.5 74 71.6
Dinv01710 Davidia involucrata HOM05D004241 ORTHO05D006031 5.3e-22 107.5 74 68.9
Dinv04461 Davidia involucrata HOM05D004241 ORTHO05D006031 5.3e-22 107.5 74 68.9
Dinv05780 Davidia involucrata HOM05D004241 ORTHO05D006031 5.3e-22 107.5 74 68.9
Nn2g10892 Nelumbo nucifera HOM05D004241 ORTHO05D006031 5.3e-22 107.5 74 71.6
TWI74G0606 Tripterygium wilfordii HOM05D004241 ORTHO05D006031 5.3e-22 107.5 74 71.6
GSVIVG01011187001 Vitis vinifera HOM05D004241 ORTHO05D006031 5.3e-22 107.5 74 71.6
ATR0681G392 Amborella trichopoda HOM05D004241 ORTHO05D006031 6.9e-22 107.1 74 68.9
Duzib128G1618 Durio zibethinus HOM05D004241 ORTHO05D006031 6.9e-22 107.1 74 70.3
MD12G1171900 Malus domestica HOM05D004241 ORTHO05D006031 6.9e-22 107.1 74 70.3
PSO801G0614 Papaver somniferum HOM05D004241 ORTHO05D006031 6.9e-22 107.1 74 70.3
unitig_578.g15901 Utricularia gibba HOM05D004241 ORTHO05D006031 6.9e-22 107.1 74 71.6
vmacro08889 Vaccinium macrocarpon HOM05D004241 ORTHO05D006031 6.9e-22 107.1 74 70.3
vmacro08890 Vaccinium macrocarpon HOM05D004241 ORTHO05D006031 6.9e-22 107.1 56 91.1
HPP92_013785 Vanilla planifolia HOM05D004241 ORTHO05D006031 6.9e-22 107.1 74 71.6
AUR62030817 Chenopodium quinoa HOM05D004241 ORTHO05D006031 9.0e-22 106.7 74 70.3
Lsat_1_v5_gn_8_101501 Lactuca sativa HOM05D004241 ORTHO05D006031 9.0e-22 106.7 74 71.6
Potri.016G119400 Populus trichocarpa HOM05D004241 ORTHO05D006031 9.0e-22 106.7 74 70.3
Thecc.05G012600 Theobroma cacao HOM05D004241 ORTHO05D006031 9.0e-22 106.7 74 70.3
Aa31LG10G9090 Aethionema arabicum HOM05D004241 ORTHO05D006031 1.2e-21 106.3 74 71.6
Ah.12g058810 Amaranthus hybridus HOM05D004241 ORTHO05D006031 1.2e-21 106.3 74 70.3
arahy.Tifrunner.gnm1.ann1.X8HB46 Arachis hypogaea HOM05D004241 ORTHO05D026893 1.2e-21 106.3 74 71.6
FAN14G4537 Fragaria x ananassa HOM05D004241 ORTHO05D006031 1.5e-21 105.9 56 91.1
Gorai.012G116000 Gossypium raimondii HOM05D004241 ORTHO05D006031 1.5e-21 105.9 56 91.1
Os05g0349700 Oryza sativa ssp. japonica HOM05D004241 ORTHO05D006031 1.5e-21 105.9 74 71.6
Sabra16G0115300 Salix brachista HOM05D004241 ORTHO05D006031 1.5e-21 105.9 74 70.3
Solyc09g014760.4 Solanum lycopersicum HOM05D004241 ORTHO05D006031 1.5e-21 105.9 74 71.6
AagrBONN_evm.TU.Sc2ySwM_228.1146 Anthoceros agrestis HOM05D004241 ORTHO05D006031 2.0e-21 105.5 74 70.3
COL.COLO4_03385 Corchorus olitorius HOM05D004241 ORTHO05D006031 2.0e-21 105.5 56 89.3
Mapoly0045s0080 Marchantia polymorpha HOM05D004241 ORTHO05D006031 2.6e-21 105.1 74 67.6
QL07p035079 Quercus lobata HOM05D004241 ORTHO05D006031 2.6e-21 105.1 74 70.3
Oeu038754.1 Olea europaea HOM05D004241 ORTHO05D006031 3.4e-21 104.8 74 71.6
PSO339G5814 Papaver somniferum HOM05D004241 ORTHO05D006031 3.4e-21 104.8 74 68.9
AUR62030480 Chenopodium quinoa HOM05D004241 ORTHO05D006031 4.5e-21 104.4 56 87.5
Duzib093G0784 Durio zibethinus HOM05D004241 ORTHO05D006031 1.0e-20 103.2 55 89.1
SEGI_30165 Sequoiadendron giganteum HOM05D004241 ORTHO05D006031 6.5e-20 100.5 74 64.9
Lj2C71T11 Lonicera japonica HOM05D004241 ORTHO05D006031 1.1e-19 99.8 88 61.4
Pp3c13_13830 Physcomitrium patens HOM05D004241 ORTHO05D006031 1.9e-19 99.0 74 66.2
SMO271G0089 Selaginella moellendorffii HOM05D004241 ORTHO05D006031 4.2e-19 97.8 74 66.2
A01p23250 Brassica napus HOM05D003030 ORTHO05D006031 1.2e-18 96.3 100 55.0
Cre06.g294750 Chlamydomonas reinhardtii HOM05D004241 ORTHO05D006031 1.2e-18 96.3 74 62.2
CDE04G2983 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 1.6e-18 95.9 74 64.9
Aqoxy4G02498 Aquilegia oxysepala HOM05D004241 ORTHO05D006031 2.7e-18 95.1 74 62.2
C01p28890 Brassica napus HOM05D003030 ORTHO05D006031 2.7e-18 95.1 100 54.0
PSO339G4053 Papaver somniferum HOM05D004241 ORTHO05D006031 2.7e-18 95.1 74 59.5
PSO384G4055 Papaver somniferum HOM05D004241 ORTHO05D006031 2.7e-18 95.1 74 59.5
MCO16G058 Micromonas commoda HOM05D004241 ORTHO05D006031 3.5e-18 94.7 73 61.6
PRCOL_00003234 Prasinoderma coloniale HOM05D004241 ORTHO05D006031 7.9e-18 93.6 76 60.5
arahy.Tifrunner.gnm1.ann1.F5Z0S5 Arachis hypogaea HOM05D004241 ORTHO05D006031 1.0e-17 93.2 74 63.5
BcaC02g10323 Brassica carinata HOM05D004241 ORTHO05D026893 1.3e-17 92.8 118 53.4
Haze_21025 Corylus avellana HOM05D004241 ORTHO05D006031 1.3e-17 92.8 49 85.7
arahy.Tifrunner.gnm1.ann1.YJ5G8U Arachis hypogaea HOM05D004241 ORTHO05D006031 9.7e-16 86.7 80 58.8
arahy.Tifrunner.gnm1.ann1.IR2XKV Arachis hypogaea HOM05D004241 ORTHO05D006031 1.8e-14 82.4 46 87.0
SalBow5G3053 Salvia bowleyana HOM05D004241 ORTHO05D006031 1.4e-11 72.8 35 94.3
CBR_g38410 Chara braunii HOM05D004241 ORTHO05D006031 1.6e-10 69.3 44 77.3
Actinidia20747 Actinidia chinensis HOM05D004241 ORTHO05D056132 3.9e-09 64.7 43 69.8


User provided reference genes

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