Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 7.9e-35 149.8 72 100.0
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 7.9e-35 149.8 72 100.0
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 3.0e-34 147.9 72 98.6
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 3.0e-34 147.9 72 98.6
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 3.0e-34 147.9 72 98.6
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 8.7e-34 146.4 72 97.2
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 3.7e-32 141.0 72 93.1
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 1.1e-31 139.4 72 91.7
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.4e-31 139.0 72 91.7
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 1.2e-30 136.0 72 90.3
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 2.6e-30 134.8 72 90.3
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 5.8e-30 133.7 72 88.9
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 7.6e-30 133.3 72 88.9
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 2.2e-29 131.7 74 87.8
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 8.4e-29 129.8 73 87.7
AL4G27570 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 4.2e-28 127.5 75 86.7
AT2G32200 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.0e-26 122.9 73 83.6
AL4G27560 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 6.2e-24 113.6 73 78.1
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 8.2e-24 113.2 74 74.3
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 4.0e-23 110.9 74 75.7
Carub.0004s1352 Capsella rubella HOM05D002385 ORTHO05D002245 6.9e-23 110.2 74 75.7
Carub.0001s0465 Capsella rubella HOM05D002385 ORTHO05D002245 8.4e-21 103.2 74 73.0
AT2G32190 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.4e-20 102.4 58 82.8
A04p24750 Brassica napus HOM05D002385 ORTHO05D002245 1.9e-20 102.1 56 87.5
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 5.5e-20 100.5 74 71.6
BraA10t42676Z Brassica rapa HOM05D002385 ORTHO05D002245 4.6e-19 97.4 74 70.3
BolC5t29144H Brassica oleracea HOM05D002385 ORTHO05D002245 7.9e-19 96.7 74 70.3
CARHR004830 Cardamine hirsuta HOM05D002385 ORTHO05D002245 2.3e-18 95.1 74 67.6
C05p03670 Brassica napus HOM05D002385 ORTHO05D002245 3.0e-18 94.7 74 68.9
Thhalv10009262m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 3.9e-18 94.4 75 68.0
Sp1g04210 Schrenkiella parvula HOM05D002385 ORTHO05D002245 2.2e-16 88.6 74 62.2
AT1G05340 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 8.2e-16 86.7 74 64.9
AL1G15140 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 2.4e-15 85.1 74 63.5
A10p04050 Brassica napus HOM05D002385 ORTHO05D002245 1.2e-14 82.8 74 60.8
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 3.4e-14 81.3 82 52.4
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 5.9e-14 80.5 75 60.0
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.0e-13 79.7 73 60.3
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 3.8e-13 77.8 55 72.7
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 3.8e-13 77.8 72 62.5
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 8.5e-13 76.6 72 55.6
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 1.1e-12 76.3 56 66.1
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 1.1e-12 76.3 56 66.1
Aa31LG1G19350 Aethionema arabicum HOM05D002385 ORTHO05D002245 4.2e-12 74.3 58 72.4
Cpa.g.sc7.104 Carica papaya HOM05D002385 ORTHO05D002245 5.5e-12 73.9 59 64.4
Migut.M01554 Erythranthe guttata HOM05D002385 ORTHO05D002245 9.4e-12 73.2 80 53.8
Manes.05G115500 Manihot esculenta HOM05D002385 ORTHO05D002245 4.6e-11 70.9 77 50.6
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 6.1e-11 70.5 71 54.9
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 1.0e-10 69.7 74 58.1
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 1.0e-10 69.7 73 57.5
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 1.0e-10 69.7 73 57.5
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 1.0e-10 69.7 85 47.1
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 1.4e-10 69.3 61 59.0
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 1.8e-10 68.9 72 55.6
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 2.3e-10 68.6 75 57.3
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.3e-10 68.6 77 51.9
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 5.1e-10 67.4 79 53.2
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 5.1e-10 67.4 79 53.2
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 8.8e-10 66.6 77 53.2
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.5e-09 65.1 75 53.3
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 2.5e-09 65.1 83 47.0
Manes.11G006500 Manihot esculenta HOM05D002385 ORTHO05D002245 3.3e-09 64.7 94 43.6
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 4.3e-09 64.3 77 50.6
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 4.3e-09 64.3 71 53.5
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 4.3e-09 64.3 71 53.5
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 5.7e-09 63.9 72 56.9
CiPaw.11G059900 Carya illinoinensis HOM05D002385 ORTHO05D002245 5.7e-09 63.9 96 44.8
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 7.4e-09 63.5 75 52.0
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 7.4e-09 63.5 75 53.3
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 7.4e-09 63.5 69 55.1
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 7.4e-09 63.5 80 51.2
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 7.4e-09 63.5 70 55.7
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 9.7e-09 63.2 74 50.0
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 9.7e-09 63.2 71 56.3
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 9.7e-09 63.2 71 56.3
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 9.7e-09 63.2 71 56.3
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 9.7e-09 63.2 78 50.0
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 9.7e-09 63.2 69 53.6
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 9.7e-09 63.2 69 53.6
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 1.3e-08 62.8 71 56.3
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.3e-08 62.8 71 54.9
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 1.3e-08 62.8 70 51.4
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 1.3e-08 62.8 63 57.1
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 1.3e-08 62.8 75 56.0
C09p55310 Brassica napus HOM05D002385 ORTHO05D002245 1.7e-08 62.4 56 57.1
C09p55320 Brassica napus HOM05D002385 ORTHO05D002245 1.7e-08 62.4 56 57.1
BolC9t58392H Brassica oleracea HOM05D002385 ORTHO05D002245 1.7e-08 62.4 56 57.1
BolC9t58394H Brassica oleracea HOM05D002385 ORTHO05D002245 1.7e-08 62.4 56 57.1
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 1.7e-08 62.4 76 50.0
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 1.7e-08 62.4 74 58.1
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 2.2e-08 62.0 71 56.3
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 2.2e-08 62.0 70 52.9
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 2.2e-08 62.0 71 54.9
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 2.8e-08 61.6 88 46.6
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 2.8e-08 61.6 73 56.2
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 2.8e-08 61.6 72 55.6
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 2.8e-08 61.6 74 51.4
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 3.7e-08 61.2 74 51.4
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 3.7e-08 61.2 72 50.0
Thhalv10011923m.g Eutrema salsugineum HOM05D014824 ORTHO05D002245 3.7e-08 61.2 58 58.6
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 3.7e-08 61.2 71 52.1
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.7e-08 61.2 71 54.9
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 3.7e-08 61.2 72 51.4
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 3.7e-08 61.2 79 51.9
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 4.8e-08 60.8 73 54.8
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 4.8e-08 60.8 69 50.7
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 4.8e-08 60.8 72 51.4
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 4.8e-08 60.8 77 53.2
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 4.8e-08 60.8 64 56.2
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 6.3e-08 60.5 79 50.6
FvH4_6g39683 Fragaria vesca HOM05D002385 ORTHO05D002245 8.2e-08 60.1 62 53.2
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 8.2e-08 60.1 71 56.3
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 8.2e-08 60.1 72 54.2
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.1e-07 59.7 77 50.6
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.1e-07 59.7 60 60.0
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 1.1e-07 59.7 63 54.0
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 1.1e-07 59.7 73 46.6
Thecc.07G152000 Theobroma cacao HOM05D021429 ORTHO05D022417 1.1e-07 59.7 90 44.4
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 1.4e-07 59.3 76 48.7
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 1.4e-07 59.3 77 50.6
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 1.4e-07 59.3 74 47.3
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 1.4e-07 59.3 72 52.8
AL1G64310 Arabidopsis lyrata HOM05D014824 ORTHO05D002245 1.8e-07 58.9 55 60.0
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 1.8e-07 58.9 89 46.1
FvH4_6g39640 Fragaria vesca HOM05D002385 ORTHO05D002245 1.8e-07 58.9 65 56.9
FAN14G3978 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.8e-07 58.9 65 56.9
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 1.8e-07 58.9 79 49.4
RcHm_v2.0_Chr2g0153711 Rosa chinensis HOM05D002385 ORTHO05D002245 1.8e-07 58.9 71 52.1
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 2.4e-07 58.5 74 50.0
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 2.4e-07 58.5 74 50.0
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 2.4e-07 58.5 79 48.1
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.1e-07 58.2 57 59.6
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 3.1e-07 58.2 72 51.4
BcaB07g33174 Brassica carinata HOM05D014824 ORTHO05D002245 4.1e-07 57.8 57 56.1
BcaC08g43673 Brassica carinata HOM05D014824 ORTHO05D002245 4.1e-07 57.8 57 56.1
C06p10930 Brassica napus HOM05D014824 ORTHO05D002245 4.1e-07 57.8 57 56.1
BraSC56t46388Z Brassica rapa HOM05D014824 ORTHO05D002245 4.1e-07 57.8 57 56.1
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 4.1e-07 57.8 74 50.0
CARHR045780 Cardamine hirsuta HOM05D014824 ORTHO05D002245 4.1e-07 57.8 57 57.9
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 4.1e-07 57.8 65 56.9
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 4.1e-07 57.8 65 55.4
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 4.1e-07 57.8 74 51.4
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 4.1e-07 57.8 66 51.5
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 4.1e-07 57.8 72 50.0
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 5.3e-07 57.4 77 50.6
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 5.3e-07 57.4 61 57.4
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 5.3e-07 57.4 63 55.6
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 5.3e-07 57.4 61 57.4
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 5.3e-07 57.4 61 57.4
Sabra16G0021100 Salix brachista HOM05D002385 ORTHO05D002245 5.3e-07 57.4 68 50.0
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 6.9e-07 57.0 82 45.1
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 6.9e-07 57.0 70 48.6
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 6.9e-07 57.0 78 51.3
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 9.1e-07 56.6 54 57.4
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 9.1e-07 56.6 51 62.7
QL11p017947 Quercus lobata HOM05D002385 ORTHO05D002245 9.1e-07 56.6 73 45.2
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 9.1e-07 56.6 72 51.4
Sabra16G0021300 Salix brachista HOM05D002385 ORTHO05D002245 9.1e-07 56.6 55 58.2
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 1.2e-06 56.2 78 43.6
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 1.2e-06 56.2 78 48.7
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 1.2e-06 56.2 72 47.2
A01p32930 Brassica napus HOM05D002385 ORTHO05D002245 1.5e-06 55.8 66 53.0
C01p42010 Brassica napus HOM05D002385 ORTHO05D002245 1.5e-06 55.8 70 51.4
BraA01t03414Z Brassica rapa HOM05D002385 ORTHO05D002245 1.5e-06 55.8 66 53.0
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 2.0e-06 55.5 74 50.0
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 2.0e-06 55.5 72 47.2
FAN02G1107 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.0e-06 55.5 62 54.8
FvH4_6g39682 Fragaria vesca HOM05D002385 ORTHO05D002245 2.6e-06 55.1 66 51.5
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 2.6e-06 55.1 75 46.7
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 2.6e-06 55.1 47 63.8
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 2.6e-06 55.1 67 53.7
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 3.4e-06 54.7 70 50.0
TPR.G9750 Trifolium pratense HOM05D002385 ORTHO05D002245 3.4e-06 54.7 67 43.3
HPP92_004187 Vanilla planifolia HOM05D002385 ORTHO05D002245 3.4e-06 54.7 48 56.2
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 4.5e-06 54.3 59 57.6
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 4.5e-06 54.3 75 49.3
Dinv05962 Davidia involucrata HOM05D014462 ORTHO05D018947 4.5e-06 54.3 100 34.0
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 4.5e-06 54.3 73 42.5
BolC9t58393H Brassica oleracea HOM05D002385 ORTHO05D033827 5.9e-06 53.9 55 52.7
Duzib235G0963 Durio zibethinus HOM05D014462 ORTHO05D002245 5.9e-06 53.9 42 57.1
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 5.9e-06 53.9 69 53.6
Gohir.A07G081200 Gossypium hirsutum HOM05D002385 ORTHO05D002245 5.9e-06 53.9 54 53.7
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 5.9e-06 53.9 73 42.5
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 7.7e-06 53.5 71 45.1


User provided reference genes

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