Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 1.5e-57 226.9 210 100.0
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 1.5e-57 226.9 210 100.0
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 8.1e-56 221.1 210 94.3
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 3.4e-54 215.7 211 98.6
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 3.4e-54 215.7 211 98.6
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 4.4e-54 215.3 109 100.0
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 5.1e-50 201.8 109 95.4
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 2.4e-47 193.0 109 89.0
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 1.2e-46 190.7 109 88.1
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 1.5e-46 190.3 109 88.1
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 1.5e-46 190.3 109 87.2
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 2.0e-46 189.9 109 87.2
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 2.0e-46 189.9 109 89.0
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 2.6e-46 189.5 109 87.2
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 1.3e-45 187.2 109 88.1
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 2.9e-45 186.0 108 86.1
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 1.1e-44 184.1 108 85.2
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 1.1e-44 184.1 108 85.2
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 1.1e-44 184.1 108 85.2
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 1.4e-44 183.7 108 85.2
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 4.2e-44 182.2 108 84.3
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 7.9e-43 177.9 109 80.7
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 3.0e-42 176.0 109 79.8
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 3.0e-42 176.0 109 80.7
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 3.0e-42 176.0 109 79.8
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 3.0e-42 176.0 109 79.8
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 3.9e-42 175.6 109 79.8
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 3.9e-42 175.6 109 79.8
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 1.1e-41 174.1 108 79.6
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 1.1e-41 174.1 109 78.9
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 1.1e-41 174.1 108 78.7
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 1.5e-41 173.7 108 79.6
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.5e-41 173.7 107 80.4
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 2.5e-41 172.9 107 78.5
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 2.5e-41 172.9 107 78.5
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 2.5e-41 172.9 108 77.8
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 3.3e-41 172.6 108 78.7
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 3.3e-41 172.6 107 78.5
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 3.3e-41 172.6 107 78.5
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 3.3e-41 172.6 105 81.0
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 4.3e-41 172.2 108 77.8
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 4.3e-41 172.2 108 77.8
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 4.3e-41 172.2 108 77.8
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 5.6e-41 171.8 108 78.7
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 7.4e-41 171.4 105 80.0
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 9.6e-41 171.0 108 78.7
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 9.6e-41 171.0 107 78.5
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 9.6e-41 171.0 107 78.5
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 1.3e-40 170.6 109 77.1
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 1.3e-40 170.6 108 77.8
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 1.3e-40 170.6 107 77.6
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 1.3e-40 170.6 108 77.8
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 1.6e-40 170.2 108 76.9
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 2.1e-40 169.9 108 78.7
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 2.1e-40 169.9 108 77.8
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 2.1e-40 169.9 108 78.7
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 2.8e-40 169.5 109 76.1
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 3.7e-40 169.1 108 75.0
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 4.8e-40 168.7 108 76.9
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 4.8e-40 168.7 108 76.9
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 6.2e-40 168.3 104 78.8
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 6.2e-40 168.3 108 76.9
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 6.2e-40 168.3 109 75.2
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 6.2e-40 168.3 108 76.9
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 6.2e-40 168.3 105 78.1
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 8.1e-40 167.9 108 76.9
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 1.1e-39 167.5 104 77.9
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 1.1e-39 167.5 109 73.4
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 1.1e-39 167.5 108 75.9
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 1.1e-39 167.5 108 75.9
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 1.4e-39 167.2 108 75.0
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 1.4e-39 167.2 108 76.9
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 1.8e-39 166.8 108 75.9
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 1.8e-39 166.8 109 76.1
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 1.8e-39 166.8 109 76.1
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 2.4e-39 166.4 109 76.1
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 2.4e-39 166.4 107 74.8
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 2.4e-39 166.4 108 75.9
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 2.4e-39 166.4 105 77.1
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 3.1e-39 166.0 105 77.1
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 3.1e-39 166.0 108 75.0
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 3.1e-39 166.0 108 75.0
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 3.1e-39 166.0 108 75.0
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 3.1e-39 166.0 109 78.0
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 3.1e-39 166.0 115 73.9
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 3.1e-39 166.0 108 75.9
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 4.0e-39 165.6 108 76.9
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 5.3e-39 165.2 107 73.8
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 6.9e-39 164.9 110 76.4
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 6.9e-39 164.9 110 76.4
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 9.0e-39 164.5 108 74.1
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 9.0e-39 164.5 105 76.2
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 1.2e-38 164.1 107 76.6
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 1.2e-38 164.1 108 75.9
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 1.5e-38 163.7 107 76.6
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 2.6e-38 162.9 108 73.1
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 3.4e-38 162.5 108 73.1
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 4.5e-38 162.2 105 74.3
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 4.5e-38 162.2 103 77.7
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 7.6e-38 161.4 105 75.2
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 7.6e-38 161.4 105 75.2
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 7.6e-38 161.4 108 73.1
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 1.0e-37 161.0 108 72.2
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 1.0e-37 161.0 105 77.1
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 1.3e-37 160.6 105 76.2
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 1.3e-37 160.6 110 74.5
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 2.9e-37 159.5 103 75.7
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 2.9e-37 159.5 103 75.7
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 8.4e-37 157.9 109 73.4
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 1.4e-36 157.1 104 74.0
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 1.9e-36 156.8 111 72.1
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 1.9e-36 156.8 111 72.1
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 4.2e-36 155.6 100 77.0
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 4.6e-35 152.1 135 62.2
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 2.3e-34 149.8 109 63.3
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 8.7e-34 147.9 109 62.4
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 4.3e-33 145.6 132 58.3
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 1.3e-32 144.1 106 66.0
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 8.2e-32 141.4 103 67.0
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 1.2e-30 137.5 78 85.9
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 2.0e-30 136.7 77 85.7
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 2.6e-30 136.3 166 48.2
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 1.0e-29 134.4 186 45.7
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 1.7e-29 133.7 78 82.1
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 8.4e-29 131.3 70 92.9
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 1.1e-28 131.0 77 81.8
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 1.2e-27 127.5 77 79.2
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.2e-27 127.5 193 42.0
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 1.6e-27 127.1 79 73.4
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 8.7e-26 121.3 121 60.3
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 4.3e-25 119.0 77 80.5
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 9.7e-25 117.9 73 76.7
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 1.1e-23 114.4 227 35.7
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 4.5e-22 109.0 83 63.9
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 7.7e-22 108.2 67 80.6
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 7.7e-22 108.2 67 80.6
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 4.2e-20 102.4 60 83.3
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 2.7e-19 99.8 78 67.9
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 2.7e-19 99.8 78 67.9
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 2.7e-19 99.8 78 67.9
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 3.6e-19 99.4 84 67.9
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 2.3e-18 96.7 74 60.8
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 7.4e-17 91.7 103 49.5
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 9.7e-17 91.3 142 46.5
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 1.1e-15 87.8 108 51.9
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 1.1e-15 87.8 70 64.3
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 1.7e-13 80.5 46 89.1
SGA_v2.0_scaffold37G14924 Striga asiatica HOM05D004131 ORTHO05D004778 2.9e-13 79.7 117 45.3
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 1.4e-12 77.4 41 95.1
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 8.8e-10 68.2 34 85.3
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 1.5e-09 67.4 88 46.6
BcaB02g07199 Brassica carinata HOM05D004131 ORTHO05D004778 1.5e-09 67.4 41 82.9
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 2.0e-09 67.0 43 74.4
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 2.0e-09 67.0 43 74.4
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 3.3e-09 66.2 43 76.7
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 4.4e-09 65.9 42 78.6
BcaNung06582 Brassica carinata HOM05D004131 ORTHO05D004778 2.8e-08 63.2 41 78.0
BcaB05g25107 Brassica carinata HOM05D004131 ORTHO05D004778 1.4e-07 60.8 45 75.6
BcaB05g25109 Brassica carinata HOM05D004131 ORTHO05D004778 1.4e-07 60.8 45 75.6
BcaB05g25118 Brassica carinata HOM05D004131 ORTHO05D004778 1.4e-07 60.8 45 75.6
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 3.1e-07 59.7 43 69.8
BcaB05g25110 Brassica carinata HOM05D004131 ORTHO05D004778 4.1e-07 59.3 45 73.3
BcaB05g25112 Brassica carinata HOM05D004131 ORTHO05D004778 4.1e-07 59.3 45 73.3
BcaB05g25113 Brassica carinata HOM05D004131 ORTHO05D004778 4.1e-07 59.3 45 73.3
BcaB05g25117 Brassica carinata HOM05D004131 ORTHO05D004778 5.3e-07 58.9 45 73.3


User provided reference genes

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