Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 3484.1 1814 100.0
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 3436.4 1826 98.1
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 3358.9 1830 96.4
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 3342.7 1843 95.5
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 3226.8 1822 92.4
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 3223.3 1834 91.7
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 3149.8 1819 90.1
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 3136.7 1815 90.0
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 3136.3 1819 89.5
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 3107.8 1822 88.8
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 3053.8 1828 86.9
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 2816.6 1824 80.0
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 2402.9 1814 67.5
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 2383.6 1816 67.5
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 2376.7 1812 67.1
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2364.0 1815 67.6
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 2357.8 1821 66.9
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2351.2 1816 66.6
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 2346.6 1813 66.9
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 2339.7 1821 66.4
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 2329.3 1811 65.4
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 2324.3 1815 65.7
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2318.5 1834 65.9
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 2308.5 1816 66.4
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2308.1 1834 65.6
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 2307.3 1819 65.0
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 2296.9 1814 65.7
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 2291.5 1817 64.9
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 2290.0 1813 65.6
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 2287.3 1867 63.9
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 2272.7 1809 64.8
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 2265.0 1812 64.3
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2251.1 1810 64.7
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 2251.1 1821 63.5
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 2250.3 1805 64.0
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2246.1 1813 64.0
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 2239.2 1803 63.6
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 2234.5 1814 63.6
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 2229.1 1819 62.9
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 2227.6 1810 64.5
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 2223.0 1811 64.6
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2222.6 1810 63.8
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 2220.7 1805 64.7
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 2219.5 1818 64.1
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 2215.3 1808 64.0
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2208.7 1809 63.9
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2204.5 1811 63.4
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 2203.7 1808 63.6
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 2198.3 1812 62.5
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2193.7 1811 63.4
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2192.9 1809 63.4
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 2187.9 1852 63.3
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 2184.1 1810 62.1
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 2184.1 1812 61.9
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 2180.6 1823 63.0
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 2179.8 1810 62.3
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 2174.4 1807 63.6
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 2171.0 1818 61.9
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 2170.6 1824 61.7
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 2170.2 1804 61.1
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 2158.6 1817 61.1
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2157.5 1809 62.1
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2157.1 1818 62.2
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2156.7 1832 62.2
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2151.7 1813 61.4
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 2150.9 1790 63.5
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 2145.9 1818 61.5
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2140.5 1808 62.1
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2135.5 1814 61.0
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 2134.0 2360 51.4
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 2129.8 1979 57.8
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 2108.2 1840 59.6
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 2088.5 1813 60.6
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 2068.5 1887 58.8
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 2034.2 1817 58.8
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 2015.4 1821 58.0
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 1940.6 1482 67.5
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 0.0e+00 1930.6 1351 79.2
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 1887.1 1509 64.3
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 1867.8 1398 67.7
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1768.1 1361 65.9
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1729.9 1400 63.6
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1728.8 1320 67.0
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1728.0 1308 67.5
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1647.9 1872 47.5
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1565.1 1356 61.1
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1548.9 1862 46.2
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1544.3 1346 61.2
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1525.8 1878 45.8
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1520.4 1832 47.4
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1459.9 1231 63.8
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1432.5 1650 47.4
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1374.0 1150 61.9
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1355.9 1094 64.1
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1259.2 1121 58.4
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1133.2 907 62.2
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1103.6 1061 55.4
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 9.5e-286 988.0 1568 37.5
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.7e-271 940.6 888 55.6
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 8.9e-252 875.2 1742 34.4
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 4.0e-244 849.7 1798 33.6
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 3.8e-234 816.6 644 65.7
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 1.7e-218 764.6 791 50.3
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 5.7e-190 669.8 610 59.3
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 2.4e-188 664.5 500 70.0
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 1.4e-172 612.1 674 51.5
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 3.2e-169 600.9 443 69.1
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 3.0e-167 594.3 450 69.1
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 1.2e-163 582.4 2014 27.0
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.3e-151 541.6 503 57.1
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 7.8e-147 526.6 450 62.2
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 9.5e-145 519.6 347 74.4
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 5.8e-142 510.4 455 62.2
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 2.4e-127 461.8 295 75.6
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 8.4e-109 400.2 826 34.1
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 2.5e-100 372.1 361 56.8
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 2.7e-91 342.0 948 26.5
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 1.8e-90 339.3 283 61.1
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 2.5e-89 335.5 286 59.8
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 6.3e-88 330.9 284 59.9
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 7.7e-78 297.4 343 55.4
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 5.5e-76 291.2 161 86.3
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 1.3e-69 270.0 143 100.0
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 4.0e-66 258.5 269 48.7
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 1.5e-65 256.5 190 68.9
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 2.7e-62 245.7 338 42.9
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 1.7e-61 243.0 345 39.4
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.4e-57 228.8 206 56.3
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 1.7e-53 216.5 159 65.4
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 2.1e-43 183.0 191 50.3
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 6.8e-42 177.9 152 56.6
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 2.0e-41 176.4 148 65.5
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 3.0e-37 162.5 110 73.6
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 2.1e-35 156.4 167 53.3
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 1.4e-34 153.7 286 38.1
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 8.9e-34 151.0 207 44.0
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 7.8e-30 137.9 264 37.1
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 4.3e-28 132.1 121 60.3
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 4.3e-28 132.1 185 45.9
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 1.2e-27 130.6 185 45.4
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 9.9e-25 120.9 99 59.6
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 8.3e-24 117.9 77 71.4
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 8.3e-24 117.9 167 39.5
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 4.1e-23 115.5 75 73.3
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 5.4e-23 115.2 145 43.4
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.1e-18 100.9 147 40.8
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.3e-16 94.0 84 50.0
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 8.4e-16 91.3 92 54.3
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 8.4e-16 91.3 165 35.8
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.1e-15 90.9 109 48.6
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 1.2e-14 87.4 237 27.0
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 2.1e-14 86.7 93 58.1
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 2.7e-14 86.3 177 33.9
SEGI_07125 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.3e-11 77.4 117 44.4
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 8.1e-11 74.7 55 61.8
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 1.2e-09 70.9 60 53.3
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 6.4e-08 65.1 115 33.0
MD12G1083300 Malus domestica HOM05D004500 ORTHO05D005775 1.4e-07 63.9 54 70.4
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 9.3e-07 61.2 66 50.0
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 2.7e-06 59.7 78 46.2
MELO3C033954.2 Cucumis melo HOM05D004500 ORTHO05D005775 3.5e-06 59.3 50 48.0


User provided reference genes

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