Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p51290 Brassica napus HOM05D004419 ORTHO05D005480 1.1e-95 353.2 172 100.0
AL3G34730 Arabidopsis lyrata HOM05D004419 ORTHO05D005480 1.7e-22 110.2 59 78.0
Sp3g18830 Schrenkiella parvula HOM05D004419 ORTHO05D005480 1.7e-22 110.2 59 78.0
Aa31LG8G7630 Aethionema arabicum HOM05D004419 ORTHO05D005480 6.3e-22 108.2 59 76.3
BcaC05g28276 Brassica carinata HOM05D004419 ORTHO05D005480 6.3e-22 108.2 59 76.3
C05p43260 Brassica napus HOM05D004419 ORTHO05D005480 6.3e-22 108.2 59 76.3
BolC5t33056H Brassica oleracea HOM05D004419 ORTHO05D005480 6.3e-22 108.2 59 76.3
BraA05t21680Z Brassica rapa HOM05D004419 ORTHO05D005480 6.3e-22 108.2 59 76.3
Carub.0003s2077 Capsella rubella HOM05D004419 ORTHO05D005480 1.1e-21 107.5 59 74.6
A05p27970 Brassica napus HOM05D004419 ORTHO05D005480 1.8e-21 106.7 59 74.6
AT3G20810 Arabidopsis thaliana HOM05D004419 ORTHO05D005480 5.3e-21 105.1 59 72.9
BcaB06g26154 Brassica carinata HOM05D004419 ORTHO05D005480 5.3e-21 105.1 59 72.9
BcaC05g28278 Brassica carinata HOM05D004419 ORTHO05D005480 5.3e-21 105.1 59 72.9
Cpa.g.sc84.102 Carica papaya HOM05D004419 ORTHO05D005480 6.9e-21 104.8 57 77.2
CARHR096670 Cardamine hirsuta HOM05D004419 ORTHO05D005480 2.6e-20 102.8 55 76.4
ClCG03G013420 Citrullus lanatus HOM05D004419 ORTHO05D005480 2.6e-20 102.8 59 72.9
Oeu024454.3 Olea europaea HOM05D004419 ORTHO05D005480 2.6e-20 102.8 59 71.2
Sed0001509 Sechium edule HOM05D004419 ORTHO05D005480 2.6e-20 102.8 55 78.2
MELO3C015209.2 Cucumis melo HOM05D004419 ORTHO05D005480 5.9e-20 101.7 59 72.9
CsaV3_1G042600 Cucumis sativus L. HOM05D004419 ORTHO05D005480 5.9e-20 101.7 59 72.9
CDE05G0158 Ceratophyllum demersum HOM05D004419 ORTHO05D005480 7.7e-20 101.3 59 69.5
Lj2C654G2 Lonicera japonica HOM05D004419 ORTHO05D005480 7.7e-20 101.3 55 76.4
CANSAT54G1224 Cannabis sativa HOM05D004419 ORTHO05D005480 1.7e-19 100.1 59 72.9
Duzib168G0032 Durio zibethinus HOM05D004419 ORTHO05D005480 1.7e-19 100.1 57 75.4
TAR623G0092 Trochodendron aralioides HOM05D004419 ORTHO05D005480 2.2e-19 99.8 58 72.4
Dinv36300 Davidia involucrata HOM05D004419 ORTHO05D005480 2.9e-19 99.4 57 73.7
Phvul.011G056900 Phaseolus vulgaris HOM05D004419 ORTHO05D005480 2.9e-19 99.4 61 70.5
Gohir.A06G108900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 3.8e-19 99.0 58 70.7
Gohir.D06G112900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 5.0e-19 98.6 58 70.7
SGA_v2.0_scaffold1G00802 Striga asiatica HOM05D004419 ORTHO05D005480 5.0e-19 98.6 55 74.5
GSVIVG01025322001 Vitis vinifera HOM05D004419 ORTHO05D005480 5.0e-19 98.6 55 76.4
Aqoxy2G00106 Aquilegia oxysepala HOM05D004419 ORTHO05D005480 6.5e-19 98.2 60 66.7
CSS0021936 Camellia sinensis var. sinensis HOM05D004419 ORTHO05D005480 6.5e-19 98.2 80 56.2
Eucgr.J00814 Eucalyptus grandis HOM05D004419 ORTHO05D005480 6.5e-19 98.2 56 71.4
Nitab4.5_0000175g0140 Nicotiana tabacum HOM05D004419 ORTHO05D005480 6.5e-19 98.2 60 70.0
Nitab4.5_0003250g0020 Nicotiana tabacum HOM05D004419 ORTHO05D005480 6.5e-19 98.2 60 70.0
THA.LOC104816908 Tarenaya hassleriana HOM05D004419 ORTHO05D005480 8.5e-19 97.8 55 70.9
Cc01_g04260 Coffea canephora HOM05D004419 ORTHO05D005480 1.1e-18 97.4 55 70.9
Thecc.09G224700 Theobroma cacao HOM05D004419 ORTHO05D005480 1.1e-18 97.4 57 71.9
Glyma.11G130600 Glycine max HOM05D004419 ORTHO05D005480 1.4e-18 97.1 61 70.5
Hma1.2p1_0143F.1_g064490 Hydrangea macrophylla HOM05D004419 ORTHO05D005480 1.4e-18 97.1 57 70.2
Nn7g36075 Nelumbo nucifera HOM05D004419 ORTHO05D005480 1.4e-18 97.1 55 72.7
VMungo1127G0574 Vigna mungo HOM05D004419 ORTHO05D005480 1.4e-18 97.1 59 66.1
MBI01_g41296_MAGBIO Magnolia biondii HOM05D004419 ORTHO05D005480 1.9e-18 96.7 58 70.7
PSO384G0662 Papaver somniferum HOM05D004419 ORTHO05D005480 1.9e-18 96.7 55 70.9
Potri.001G016200 Populus trichocarpa HOM05D004419 ORTHO05D005480 1.9e-18 96.7 57 70.2
PGR119G1205 Punica granatum HOM05D004419 ORTHO05D005480 2.5e-18 96.3 59 69.5
vmacro12711 Vaccinium macrocarpon HOM05D004419 ORTHO05D005480 2.5e-18 96.3 57 70.2
Ciclev10015488m.g Citrus clementina HOM05D004419 ORTHO05D005480 3.2e-18 95.9 55 70.9
Solyc01g006680.4 Solanum lycopersicum HOM05D004419 ORTHO05D005480 3.2e-18 95.9 55 72.7
Sopen01g002670 Solanum pennellii HOM05D004419 ORTHO05D005480 3.2e-18 95.9 55 72.7
PGSC0003DMG400021346 Solanum tuberosum HOM05D004419 ORTHO05D005480 3.2e-18 95.9 55 72.7
DCAR_002041 Daucus carota HOM05D004419 ORTHO05D005480 4.2e-18 95.5 56 69.6
Glyma.12G055000 Glycine max HOM05D004419 ORTHO05D005480 4.2e-18 95.5 61 68.9
MD03G1020700 Malus domestica HOM05D004419 ORTHO05D005480 4.2e-18 95.5 56 71.4
HPP92_017970 Vanilla planifolia HOM05D004419 ORTHO05D005480 4.2e-18 95.5 77 53.2
arahy.Tifrunner.gnm1.ann1.6DX332 Arachis hypogaea HOM05D004419 ORTHO05D005480 5.5e-18 95.1 56 69.6
arahy.Tifrunner.gnm1.ann1.LD2WL8 Arachis hypogaea HOM05D004419 ORTHO05D005480 5.5e-18 95.1 56 69.6
QL01p006124 Quercus lobata HOM05D004419 ORTHO05D005480 5.5e-18 95.1 55 72.7
Cfa009704 Carpinus fangiana HOM05D004419 ORTHO05D005480 7.2e-18 94.7 55 72.7
Haze_23057 Corylus avellana HOM05D004419 ORTHO05D005480 7.2e-18 94.7 55 72.7
ECA233G0260 Erigeron canadensis HOM05D004419 ORTHO05D005480 7.2e-18 94.7 57 70.2
FvH4_3g43600 Fragaria vesca HOM05D004419 ORTHO05D005480 7.2e-18 94.7 55 70.9
FAN25G0488 Fragaria x ananassa HOM05D004419 ORTHO05D005480 7.2e-18 94.7 55 70.9
Lj3g0003248 Lotus japonicus HOM05D004419 ORTHO05D005480 7.2e-18 94.7 59 64.4
FAN21G0217 Fragaria x ananassa HOM05D004419 ORTHO05D005480 9.4e-18 94.4 55 70.9
Lsat_1_v5_gn_6_50061 Lactuca sativa HOM05D004419 ORTHO05D005480 9.4e-18 94.4 54 74.1
TWI60G0085 Tripterygium wilfordii HOM05D004419 ORTHO05D005480 1.2e-17 94.0 55 67.3
Haze_23052 Corylus avellana HOM05D004419 ORTHO05D005480 1.6e-17 93.6 55 70.9
Prupe.6G015700 Prunus persica HOM05D004419 ORTHO05D005480 1.6e-17 93.6 56 67.9
TPR.G13661 Trifolium pratense HOM05D004419 ORTHO05D005633 1.6e-17 93.6 56 67.9
Atru.chr3.2519_Atru.chr3.2520 Acer truncatum HOM05D004419 ORTHO05D005480 2.1e-17 93.2 57 64.9
Actinidia39384 Actinidia chinensis HOM05D004419 ORTHO05D005480 2.1e-17 93.2 55 70.9
Lalb_Chr19g0138221 Lupinus albus HOM05D004419 ORTHO05D005480 2.1e-17 93.2 61 67.2
Medtr4g066020 Medicago truncatula HOM05D004419 ORTHO05D005480 2.1e-17 93.2 55 69.1
RcHm_v2.0_Chr5g0078291 Rosa chinensis HOM05D004419 ORTHO05D005480 2.1e-17 93.2 55 69.1
Hund22076 Selenicereus undatus HOM05D004419 ORTHO05D005480 2.1e-17 93.2 57 68.4
Lalb_Chr01g0003291 Lupinus albus HOM05D004419 ORTHO05D005480 2.7e-17 92.8 57 68.4
RcHm_v2.0_Chr5g0076021 Rosa chinensis HOM05D004419 ORTHO05D005480 2.7e-17 92.8 55 67.3
RcHm_v2.0_Chr5g0078171 Rosa chinensis HOM05D004419 ORTHO05D005480 2.7e-17 92.8 55 67.3
EL10Ac4g10313 Beta vulgaris HOM05D004419 ORTHO05D005480 3.6e-17 92.4 57 66.7
Migut.D00562 Erythranthe guttata HOM05D004419 ORTHO05D005480 3.6e-17 92.4 55 69.1
FAN11G1953 Fragaria x ananassa HOM05D004419 ORTHO05D005480 6.1e-17 91.7 55 69.1
Os09g0489200 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 6.1e-17 91.7 57 61.4
Rhsim01G0189600 Rhododendron simsii HOM05D004419 ORTHO05D005480 7.9e-17 91.3 57 66.7
Ca_20582_v3 Cicer arietinum L. HOM05D004419 ORTHO05D005480 1.8e-16 90.1 56 66.1
HanXRQChr02g0056491 Helianthus annuus HOM05D004419 ORTHO05D005480 1.8e-16 90.1 55 67.3
HanXRQChr13g0403921 Helianthus annuus HOM05D004419 ORTHO05D005480 5.1e-16 88.6 57 64.9
AUR62019254 Chenopodium quinoa HOM05D004419 ORTHO05D005480 8.8e-16 87.8 55 63.6
AUR62043680 Chenopodium quinoa HOM05D004419 ORTHO05D005480 8.8e-16 87.8 55 63.6
SHI30509 Sapria himalayana HOM05D004419 ORTHO05D005480 8.8e-16 87.8 50 72.0
Os08g0508500 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 1.1e-15 87.4 57 63.2
AUR62000082 Chenopodium quinoa HOM05D004419 ORTHO05D005480 2.6e-15 86.3 55 63.6
Ah.04g161770 Amaranthus hybridus HOM05D004419 ORTHO05D005480 4.4e-15 85.5 57 64.9
RcHm_v2.0_Chr5g0078201 Rosa chinensis HOM05D004419 ORTHO05D005480 7.4e-15 84.7 53 67.9
Pp3c17_10850 Physcomitrium patens HOM05D004419 ORTHO05D005480 2.8e-14 82.8 54 61.1
SMO364G0845 Selaginella moellendorffii HOM05D004419 ORTHO05D005480 2.8e-14 82.8 57 59.6
AagrBONN_evm.TU.Sc2ySwM_117.3437 Anthoceros agrestis HOM05D004419 ORTHO05D005480 8.2e-14 81.3 54 61.1
FAN16G1269 Fragaria x ananassa HOM05D004419 ORTHO05D005480 2.4e-13 79.7 50 66.0
CBR_g68529 Chara braunii HOM05D004419 ORTHO05D005480 9.1e-13 77.8 57 52.6
MD11G1022000 Malus domestica HOM05D004419 ORTHO05D005480 1.2e-12 77.4 56 60.7
Mapoly0036s0149 Marchantia polymorpha HOM05D004419 ORTHO05D005480 7.7e-12 74.7 58 55.2
MBI01_g05106_MAGBIO Magnolia biondii HOM05D004419 ORTHO05D005480 1.7e-11 73.6 44 68.2
Ah.06g193530 Amaranthus hybridus HOM05D004419 ORTHO05D005480 4.2e-10 68.9 40 65.0
ATR0605G084 Amborella trichopoda HOM05D004419 ORTHO05D005480 7.2e-10 68.2 40 70.0
Cre11.g467768 Chlamydomonas reinhardtii HOM05D004419 ORTHO05D005480 3.9e-08 62.4 47 53.2
Pp3c5_1010 Physcomitrium patens HOM05D004419 ORTHO05D005480 1.5e-07 60.5 44 54.5
C07p14090 Brassica napus HOM05D000207 ORTHO05D004956 4.4e-07 58.9 29 89.7


User provided reference genes

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