Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 9.2e-93 343.6 178 100.0
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 8.9e-80 300.4 159 97.5
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 9.9e-79 297.0 154 100.0
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 1.4e-77 293.1 158 96.2
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 9.6e-42 174.1 178 56.2
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 9.0e-40 167.5 180 53.3
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 9.0e-40 167.5 179 53.6
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 7.6e-39 164.5 180 55.0
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 1.0e-38 164.1 179 53.1
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 4.2e-37 158.7 176 54.0
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 3.9e-35 152.1 146 56.8
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 3.9e-35 152.1 172 48.8
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 4.3e-34 148.7 146 54.1
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 2.8e-33 146.0 167 49.7
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 2.5e-29 132.9 154 50.0
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 2.2e-25 119.8 138 45.7
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 2.2e-25 119.8 136 44.9
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 6.3e-25 118.2 144 43.8
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 8.2e-25 117.9 144 43.8
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 4.1e-24 115.5 148 40.5
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 9.1e-24 114.4 115 52.2
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 1.5e-23 113.6 170 38.2
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 2.6e-23 112.8 115 48.7
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 4.5e-23 112.1 175 37.1
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 5.9e-23 111.7 171 38.6
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 1.3e-22 110.5 130 43.1
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 1.3e-22 110.5 124 46.8
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 1.3e-22 110.5 164 39.0
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.7e-22 110.2 129 48.1
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 2.9e-22 109.4 130 43.1
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 3.8e-22 109.0 115 48.7
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 3.8e-22 109.0 116 49.1
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 3.8e-22 109.0 94 56.4
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 3.8e-22 109.0 124 46.0
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 3.8e-22 109.0 127 45.7
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 3.8e-22 109.0 184 38.0
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 3.8e-22 109.0 162 38.3
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 3.8e-22 109.0 207 33.3
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 8.5e-22 107.8 119 46.2
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 1.4e-21 107.1 130 43.1
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 1.4e-21 107.1 98 52.0
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 1.9e-21 106.7 156 39.7
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 1.9e-21 106.7 186 34.9
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 2.5e-21 106.3 115 45.2
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 3.2e-21 105.9 122 45.9
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 4.2e-21 105.5 114 48.2
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 5.5e-21 105.1 149 39.6
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 5.5e-21 105.1 94 53.2
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 7.2e-21 104.8 94 54.3
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 7.2e-21 104.8 163 39.9
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.2e-20 104.0 97 50.5
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 1.2e-20 104.0 94 55.3
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 1.6e-20 103.6 164 37.8
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 1.6e-20 103.6 128 43.8
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 1.6e-20 103.6 173 37.0
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 2.1e-20 103.2 175 36.6
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 2.1e-20 103.2 121 41.3
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 2.1e-20 103.2 156 37.8
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 3.6e-20 102.4 146 41.8
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 3.6e-20 102.4 169 37.3
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 3.6e-20 102.4 94 51.1
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 4.7e-20 102.1 96 51.0
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 4.7e-20 102.1 126 42.9
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 4.7e-20 102.1 173 34.1
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 6.1e-20 101.7 164 39.0
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 6.1e-20 101.7 163 36.2
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 6.1e-20 101.7 134 41.0
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 6.1e-20 101.7 208 32.7
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 7.9e-20 101.3 175 37.1
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 1.0e-19 100.9 174 37.4
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 1.0e-19 100.9 172 34.3
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.0e-19 100.9 153 37.9
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 1.0e-19 100.9 94 51.1
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 1.4e-19 100.5 178 38.2
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 2.3e-19 99.8 122 41.8
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 3.0e-19 99.4 137 38.0
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 3.0e-19 99.4 170 35.3
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 3.0e-19 99.4 97 52.6
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 3.9e-19 99.0 164 37.2
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 5.1e-19 98.6 94 52.1
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 8.8e-19 97.8 186 33.3
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 8.8e-19 97.8 155 40.0
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 8.8e-19 97.8 129 41.1
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 1.1e-18 97.4 97 48.5
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 1.1e-18 97.4 98 48.0
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.1e-18 97.4 137 38.0
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.1e-18 97.4 155 40.0
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.1e-18 97.4 169 36.7
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 1.1e-18 97.4 188 35.1
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 1.5e-18 97.1 92 50.0
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 1.5e-18 97.1 118 41.5
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.5e-18 97.1 98 49.0
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 1.5e-18 97.1 93 52.7
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 2.6e-18 96.3 109 45.9
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 2.6e-18 96.3 159 39.6
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 3.3e-18 95.9 160 36.9
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 3.3e-18 95.9 97 47.4
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 3.3e-18 95.9 97 47.4
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 4.4e-18 95.5 98 50.0
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 4.4e-18 95.5 97 47.4
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 5.7e-18 95.1 97 49.5
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 7.4e-18 94.7 215 30.2
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 7.4e-18 94.7 117 45.3
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 1.3e-17 94.0 91 50.5
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.7e-17 93.6 94 46.8
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 2.2e-17 93.2 103 47.6
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 2.8e-17 92.8 94 50.0
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 8.2e-17 91.3 121 41.3
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 8.2e-17 91.3 135 37.0
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 1.5e-15 87.0 153 35.9
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.5e-15 87.0 160 35.0
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 2.6e-15 86.3 95 44.2
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 4.5e-15 85.5 77 59.7
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 4.5e-15 85.5 94 43.6
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 1.3e-14 84.0 91 45.1
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 5.0e-14 82.0 91 46.2
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 1.1e-13 80.9 60 65.0
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 1.4e-13 80.5 93 49.5
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 1.9e-13 80.1 160 30.0
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 5.5e-13 78.6 114 36.8
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 1.6e-12 77.0 94 40.4
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 3.6e-12 75.9 63 55.6
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.0e-11 74.3 100 39.0
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 1.1e-10 70.9 57 57.9
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 7.4e-10 68.2 98 34.7
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 4.8e-09 65.5 76 46.1
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 6.3e-09 65.1 76 46.1
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 8.2e-09 64.7 92 39.1
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 1.8e-08 63.5 129 30.2
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 5.3e-08 62.0 76 46.1
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 7.0e-08 61.6 85 41.2
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 4.5e-07 58.9 166 27.1
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 1.0e-06 57.8 96 34.4
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 5.0e-06 55.5 120 33.3


User provided reference genes

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