Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 0.0e+00 1096.6 556 100.0
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 7.7e-231 803.9 561 78.3
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 4.9e-177 625.2 351 92.9
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 1.3e-113 414.5 996 36.5
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 3.6e-111 406.4 979 36.2
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 6.8e-110 402.1 984 36.0
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 1.5e-109 401.0 1000 35.7
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 3.4e-109 399.8 941 36.6
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 3.4e-109 399.8 941 36.6
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 2.2e-108 397.1 935 37.0
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 2.9e-108 396.7 987 36.3
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 3.7e-108 396.4 935 36.9
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 1.1e-107 394.8 996 35.5
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 2.2e-84 317.4 449 48.1
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 2.0e-69 267.7 349 48.4
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 1.7e-68 264.6 438 43.2
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 2.8e-63 247.3 445 39.6
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 7.6e-61 239.2 493 36.5
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 2.9e-60 237.3 543 34.3
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 3.8e-60 236.9 525 35.2
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 8.4e-60 235.7 543 34.1
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 1.1e-59 235.3 505 36.0
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.1e-59 235.3 543 34.1
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 1.4e-59 235.0 501 35.9
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 2.4e-59 234.2 488 34.8
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 4.2e-59 233.4 532 35.3
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 4.6e-58 229.9 531 34.3
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 3.0e-57 227.3 530 34.9
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 1.1e-56 225.3 532 34.2
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 1.5e-56 224.9 540 33.0
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 7.4e-56 222.6 535 34.6
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.3e-55 221.9 502 34.3
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.1e-55 221.1 533 34.0
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 3.7e-55 220.3 502 34.3
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.1e-54 218.8 502 34.3
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 1.1e-54 218.8 536 33.6
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 1.4e-54 218.4 840 29.2
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 1.8e-54 218.0 454 37.2
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.4e-54 217.6 431 36.4
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 4.0e-54 216.9 533 33.4
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 5.3e-54 216.5 534 34.8
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 6.9e-54 216.1 527 33.0
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 6.9e-54 216.1 513 34.5
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 9.0e-54 215.7 527 33.2
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 9.0e-54 215.7 501 34.7
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 2.0e-53 214.5 539 32.8
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 2.6e-53 214.2 541 33.8
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 5.8e-53 213.0 541 32.7
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.0e-52 212.2 430 36.5
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 2.9e-52 210.7 515 34.4
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 3.8e-52 210.3 524 33.6
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 4.9e-52 209.9 536 33.4
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 2.5e-51 207.6 522 33.3
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 2.5e-51 207.6 431 36.4
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 3.2e-51 207.2 534 32.8
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 7.1e-51 206.1 539 33.4
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 7.1e-51 206.1 539 33.2
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 9.3e-51 205.7 508 34.3
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 9.3e-51 205.7 538 31.6
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 1.6e-50 204.9 492 32.9
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 1.6e-50 204.9 495 33.5
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.1e-50 204.5 529 34.0
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 3.5e-50 203.8 519 32.4
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 3.5e-50 203.8 519 33.5
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 6.0e-50 203.0 493 33.9
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 7.9e-50 202.6 532 32.5
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 7.9e-50 202.6 511 33.1
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 1.0e-49 202.2 523 32.5
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 1.3e-49 201.8 463 34.8
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 1.3e-49 201.8 497 32.8
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 1.3e-49 201.8 543 32.6
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 1.3e-49 201.8 523 33.1
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 2.3e-49 201.1 572 32.0
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 1.1e-48 198.7 525 32.8
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 7.4e-48 196.1 523 32.3
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 7.4e-48 196.1 518 32.0
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 9.7e-48 195.7 484 33.9
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 2.2e-47 194.5 515 32.0
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 2.2e-47 194.5 555 31.5
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 2.8e-47 194.1 458 34.7
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 3.7e-47 193.7 556 31.8
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 4.8e-47 193.4 543 31.3
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 6.3e-47 193.0 485 32.2
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 8.2e-47 192.6 448 34.4
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 1.1e-46 192.2 445 34.6
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 1.4e-46 191.8 458 34.1
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 2.0e-45 188.0 521 31.7
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 2.6e-45 187.6 466 31.8
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 3.4e-45 187.2 518 30.9
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.0e-44 185.7 535 29.7
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 2.2e-44 184.5 521 31.7
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 2.9e-44 184.1 484 32.4
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 8.5e-44 182.6 514 30.7
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 3.2e-43 180.6 536 30.6
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 1.4e-41 175.3 486 31.5
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 2.3e-41 174.5 507 31.8
BcaB01g03945 Brassica carinata HOM05D002890 ORTHO05D005855 5.7e-40 169.9 179 57.0
BcaC01g05871 Brassica carinata HOM05D002890 ORTHO05D005855 5.7e-40 169.9 179 57.0
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 5.7e-40 169.9 343 33.8
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 9.7e-40 169.1 538 29.4
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 1.1e-38 165.6 478 30.5
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 1.8e-38 164.9 556 29.0
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 9.1e-38 162.5 507 30.6
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 2.6e-37 161.0 486 31.7
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.5e-37 160.2 446 33.6
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 4.5e-37 160.2 456 31.4
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 4.5e-37 160.2 440 31.8
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 5.5e-35 153.3 411 33.1
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 2.7e-34 151.0 211 49.8
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 1.1e-32 145.6 234 45.3
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 9.7e-32 142.5 520 27.9
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 1.4e-30 138.7 549 29.5
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.8e-30 138.3 348 34.2
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.4e-27 128.6 200 39.0
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 4.7e-26 123.6 297 31.6
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 3.0e-25 120.9 485 27.4
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 1.5e-24 118.6 120 52.5
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 1.3e-23 115.5 227 36.6
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 1.3e-23 115.5 249 38.2
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 8.5e-20 102.8 162 38.9
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.0e-17 94.0 162 37.0
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 1.1e-14 85.9 97 44.3
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 2.5e-11 74.7 57 61.4
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 2.6e-08 64.7 54 57.4
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 3.4e-08 64.3 125 43.2
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.3e-07 62.4 57 61.4
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 2.8e-07 61.2 115 33.0
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 5.4e-06 57.0 53 60.4


User provided reference genes

Program Settings