Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 2378.2 1332 100.0
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 2372.8 1332 99.8
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 2345.5 1359 97.6
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 2320.0 1343 97.8
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 2237.2 1332 95.1
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 2197.9 1332 91.8
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 2148.6 1332 86.6
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 2121.7 1332 84.9
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 2119.7 1332 87.5
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 2105.5 1332 87.1
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 2044.2 1332 84.4
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1909.4 1358 77.2
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1847.8 1332 75.0
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 1846.6 1332 73.9
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1807.0 1332 72.7
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1792.7 1318 73.1
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1769.2 1332 70.9
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1765.7 1332 70.9
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1757.7 1332 70.7
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1728.8 1332 69.1
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1717.6 1332 69.5
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1711.0 1332 68.3
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1707.2 1332 70.0
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1707.2 1332 68.3
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1703.7 1332 70.1
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1701.4 1332 69.1
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1697.2 1379 67.4
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1692.6 1336 69.3
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1690.6 1563 63.5
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1687.5 1332 68.1
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1687.2 1332 68.2
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1682.9 1332 68.3
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1675.2 1333 69.6
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1667.9 1332 67.0
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1664.4 1332 66.7
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1658.7 1332 66.9
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1635.2 1332 67.6
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1633.6 1446 63.1
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1628.2 1332 67.1
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1627.1 1332 66.4
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1619.4 1332 67.1
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1598.2 1319 66.3
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1595.1 1385 63.2
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1594.7 1332 64.0
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1593.9 1332 65.9
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1582.8 1332 64.7
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1577.4 1332 65.5
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1574.3 1332 64.1
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1573.1 1333 64.4
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1572.4 1332 64.3
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1564.3 1332 63.4
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1563.5 1225 68.7
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1557.0 1339 63.0
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1550.0 1332 64.0
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1546.6 1333 66.7
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1542.7 1225 67.5
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1540.8 1333 66.5
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1540.4 1333 66.5
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1524.6 1332 63.2
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1523.1 1332 61.9
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1516.9 1276 64.8
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1507.3 1318 64.0
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1503.4 1332 63.5
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1501.9 1352 61.5
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1482.6 1269 64.2
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1481.8 1332 61.8
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1477.6 1332 60.7
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1476.5 1332 61.2
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1474.9 1385 64.9
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1469.1 1332 60.7
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1462.2 1416 58.9
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1441.0 1318 59.5
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1434.1 1333 60.6
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1417.1 1335 58.9
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1399.0 1319 59.5
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1285.0 777 94.7
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1180.2 1332 51.1
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 0.0e+00 1172.1 753 83.8
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 0.0e+00 1110.5 1333 48.7
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1102.0 797 79.3
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 1.3e-305 1053.5 1067 54.5
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 1.2e-301 1040.4 1332 45.9
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 6.1e-274 948.3 1331 43.5
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 6.7e-273 944.9 1031 53.3
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 3.2e-267 926.0 1069 50.0
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 1.3e-263 914.1 912 56.7
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 8.3e-263 911.4 898 57.1
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 4.1e-262 909.1 769 63.5
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.1e-251 874.4 1267 45.6
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 1.3e-244 850.9 675 68.9
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 5.6e-243 845.5 1110 48.5
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 1.8e-241 840.5 767 59.6
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 7.8e-237 825.1 637 69.1
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 1.7e-236 823.9 637 68.9
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 6.8e-225 785.4 737 58.3
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.6e-218 764.2 637 66.1
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 2.8e-218 763.5 733 57.3
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 8.4e-207 725.3 603 64.5
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 8.4e-207 725.3 603 64.5
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 7.3e-203 712.2 563 68.7
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 3.1e-201 706.8 1298 37.5
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 9.6e-195 685.3 740 54.5
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 2.5e-179 634.0 598 60.7
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 6.9e-169 599.4 370 90.3
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 3.7e-162 577.0 317 95.9
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 2.4e-161 574.3 1397 32.9
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 1.9e-150 538.1 359 78.0
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 2.4e-145 521.2 384 70.8
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 7.7e-144 516.2 441 64.6
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 3.4e-139 500.7 530 55.8
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.0e-135 489.2 436 62.2
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 2.5e-134 484.6 305 81.6
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 7.5e-131 473.0 1394 29.7
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 4.6e-128 463.8 1373 30.4
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 9.8e-123 446.0 462 56.3
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.3e-119 435.6 228 94.3
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 4.4e-115 420.6 253 85.0
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 2.9e-114 417.9 1368 27.0
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 7.8e-112 409.8 273 78.8
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 3.0e-111 407.9 223 90.6
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 3.2e-105 387.9 859 35.3
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 3.2e-97 361.3 196 93.9
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 3.6e-93 347.8 406 51.2
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 5.8e-91 340.5 223 79.4
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 4.6e-72 277.7 227 62.6
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 2.6e-67 261.9 221 70.1
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 3.9e-63 248.1 126 96.0
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 2.4e-52 212.2 149 76.5
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 1.0e-47 196.8 148 74.3
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 1.1e-46 193.4 192 55.2
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 1.1e-44 186.8 170 59.4
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 6.3e-37 161.0 87 90.8
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 1.2e-32 146.7 72 94.4
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 2.1e-32 146.0 115 70.4
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 5.2e-31 141.4 153 52.9
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 9.1e-28 130.6 73 98.6
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 6.5e-26 124.4 114 57.0
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 4.0e-23 115.2 119 50.4
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 2.0e-22 112.8 100 63.0
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 5.4e-20 104.8 67 74.6
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 2.7e-19 102.4 73 75.3
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 1.7e-18 99.8 115 53.0
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 2.0e-14 86.3 141 43.3
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 4.1e-12 78.6 90 50.0
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 7.8e-11 74.3 91 47.3
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 1.0e-10 73.9 62 62.9
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 7.3e-09 67.8 147 33.3
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 8.9e-07 60.8 72 54.2


User provided reference genes

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