Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 0.0e+00 1083.6 529 100.0
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 1.2e-302 1042.3 530 96.2
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 5.2e-301 1036.9 531 95.7
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 3.4e-300 1034.2 530 96.2
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 1.8e-298 1028.5 529 96.4
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 2.8e-270 934.9 535 86.7
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 2.0e-268 928.7 533 85.9
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 7.5e-268 926.8 539 85.2
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 9.5e-263 909.8 538 84.2
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 4.0e-261 904.4 544 82.9
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 4.1e-258 894.4 545 81.5
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 2.5e-247 858.6 533 80.3
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 4.3e-215 751.5 530 70.2
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 2.7e-193 679.1 538 62.1
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 4.0e-192 675.2 438 78.3
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 5.2e-192 674.9 529 63.3
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 6.7e-192 674.5 529 61.4
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 5.7e-191 671.4 529 62.6
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.7e-190 669.8 524 63.2
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.7e-190 669.8 524 63.2
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 2.8e-190 669.1 531 63.3
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 6.3e-190 667.9 529 63.5
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.1e-189 667.2 527 62.8
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 1.4e-189 666.8 529 61.6
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 4.1e-189 665.2 526 62.0
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 7.0e-189 664.5 526 62.0
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 7.0e-189 664.5 537 62.9
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 9.1e-189 664.1 531 62.7
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.6e-188 663.3 529 62.4
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 2.7e-188 662.5 530 63.2
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 5.9e-188 661.4 528 62.1
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 7.7e-188 661.0 532 63.0
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 7.7e-188 661.0 530 61.1
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.0e-187 660.6 524 62.8
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.0e-187 660.6 524 62.8
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 1.7e-187 659.8 534 61.8
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 2.2e-187 659.4 531 62.0
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 5.0e-187 658.3 539 60.7
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 5.0e-187 658.3 528 61.9
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 5.0e-187 658.3 566 59.4
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 1.1e-186 657.1 533 62.7
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.1e-186 657.1 566 59.2
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.9e-186 656.4 543 59.9
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 4.2e-186 655.2 543 61.0
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 5.5e-186 654.8 539 62.3
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 7.2e-186 654.4 534 59.6
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 9.4e-186 654.1 530 61.7
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 9.4e-186 654.1 547 59.2
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 1.6e-185 653.3 543 61.1
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 4.7e-185 651.7 531 61.2
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 6.1e-185 651.4 530 61.3
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 6.1e-185 651.4 533 60.8
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 8.0e-185 651.0 546 58.6
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 2.3e-184 649.4 542 59.0
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 4.0e-184 648.7 530 60.8
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 1.2e-183 647.1 536 61.0
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 2.0e-183 646.4 544 58.3
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 5.7e-183 644.8 542 58.9
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 1.7e-182 643.3 528 60.6
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 1.1e-181 640.6 546 59.0
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 1.1e-181 640.6 530 60.8
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 1.4e-181 640.2 540 59.1
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 9.1e-181 637.5 540 59.8
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 1.2e-180 637.1 530 61.7
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.2e-180 637.1 554 58.1
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.2e-180 637.1 554 58.1
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 2.0e-180 636.3 527 60.5
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 1.0e-179 634.0 550 57.3
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 5.0e-179 631.7 527 58.6
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.1e-178 630.6 539 60.1
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.5e-178 630.2 524 61.5
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 1.5e-178 630.2 535 58.9
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 3.2e-178 629.0 534 58.8
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 4.2e-178 628.6 530 60.4
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 9.5e-178 627.5 529 60.7
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 1.2e-177 627.1 532 60.3
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.6e-177 626.7 529 60.7
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 2.8e-177 625.9 531 60.5
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 6.8e-176 621.3 538 58.0
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 1.5e-175 620.2 531 59.9
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 2.0e-175 619.8 518 59.8
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 2.6e-175 619.4 527 58.1
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 3.4e-175 619.0 529 60.5
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.9e-174 615.1 528 59.1
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 3.1e-173 612.5 530 58.3
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 5.4e-173 611.7 560 57.7
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 1.2e-172 610.5 529 58.4
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 7.8e-172 607.8 530 57.7
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 7.8e-172 607.8 550 57.1
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 5.0e-171 605.1 536 57.1
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 1.5e-170 603.6 544 56.1
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 3.3e-170 602.4 525 57.9
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 7.3e-170 601.3 525 57.9
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.2e-169 600.5 526 58.4
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.0e-168 595.5 539 57.7
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 8.9e-168 594.3 540 58.0
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 7.5e-167 591.3 540 57.2
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.3e-163 580.5 495 58.6
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.1e-162 577.4 534 53.6
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 4.7e-161 572.0 485 58.4
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 4.7e-161 572.0 506 54.9
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 8.0e-161 571.2 528 54.9
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 1.4e-160 570.5 528 55.3
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 5.4e-157 558.5 472 60.0
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 2.0e-156 556.6 518 54.1
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 2.7e-156 556.2 490 58.8
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 2.3e-155 553.1 532 53.8
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 5.0e-155 552.0 430 63.5
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 8.9e-152 541.2 457 60.8
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 6.4e-150 535.0 408 65.4
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 2.1e-148 530.0 448 58.0
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.2e-142 510.0 399 62.7
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 2.7e-140 503.1 506 53.0
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 1.5e-138 497.3 545 56.7
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 1.0e-131 474.6 322 70.5
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 1.5e-130 470.7 322 69.6
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 1.9e-130 470.3 302 74.5
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 8.7e-123 444.9 317 67.8
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 2.5e-122 443.4 322 64.3
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.0e-115 421.4 530 41.7
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.3e-113 414.5 527 43.1
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 3.7e-113 412.9 399 53.9
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 9.0e-112 408.3 299 64.2
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 2.5e-109 400.2 588 38.8
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 3.2e-109 399.8 355 62.5
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 1.1e-104 384.8 278 74.1
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 1.8e-96 357.5 252 67.9
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 4.5e-95 352.8 265 66.4
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 7.9e-92 342.0 249 66.3
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 1.1e-82 311.6 322 51.6
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 9.7e-82 308.5 261 65.9
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 6.3e-81 305.8 261 65.5
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 5.0e-78 296.2 208 68.3
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 1.3e-73 281.6 217 62.2
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 4.8e-73 279.6 210 64.8
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 2.9e-70 270.4 165 83.6
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 1.0e-59 235.3 124 86.3
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 1.4e-59 235.0 129 81.4
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 1.4e-59 235.0 129 81.4
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 6.8e-59 232.6 177 67.8
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-50 203.4 455 30.3
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 2.2e-49 201.1 234 48.3
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.2e-47 195.3 106 82.1
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 9.8e-42 175.6 182 48.4
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 5.6e-37 159.8 101 75.2
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 6.2e-36 156.4 294 35.0
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 8.1e-36 156.0 185 47.6
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 3.1e-35 154.1 180 46.7
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 6.8e-35 152.9 76 89.5
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 6.8e-35 152.9 76 89.5
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 7.5e-34 149.4 85 80.0
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 1.7e-33 148.3 270 35.6
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 7.8e-31 139.4 109 65.1
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.7e-30 138.3 171 45.6
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 6.6e-30 136.3 271 35.4
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 1.5e-29 135.2 175 43.4
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 2.1e-28 131.3 170 45.9
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 6.8e-27 126.3 72 87.5
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.2e-26 125.6 98 61.2
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-22 112.1 59 84.7
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 1.3e-22 112.1 94 59.6
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 5.6e-13 80.1 96 41.7
C09p46170 Brassica napus HOM05D004336 ORTHO05D040132 1.2e-10 72.4 51 66.7
BolC9t57482H Brassica oleracea HOM05D004336 ORTHO05D040132 1.2e-10 72.4 51 66.7
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 5.4e-08 63.5 34 91.2


User provided reference genes

Program Settings