Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 1.1e-234 817.0 663 100.0
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 3.0e-229 798.9 676 87.6
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 4.9e-224 781.6 630 95.6
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 1.5e-220 770.0 650 92.6
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 2.4e-207 726.1 632 91.5
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 3.8e-200 702.2 631 89.5
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 1.5e-196 690.3 627 89.6
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 6.9e-194 681.4 627 87.9
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 1.2e-193 680.6 627 88.7
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 5.0e-192 675.2 629 88.9
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 4.2e-191 672.2 629 88.7
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 5.1e-189 665.2 638 90.3
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 6.5e-184 648.3 629 90.0
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 3.8e-176 622.5 615 88.9
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 5.5e-175 618.6 592 88.9
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 7.4e-172 608.2 616 86.2
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 6.3e-163 578.6 649 80.4
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 1.1e-154 551.2 642 79.8
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 9.1e-154 548.1 629 81.4
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 5.2e-133 479.2 672 74.6
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 2.2e-131 473.8 696 71.0
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 3.5e-129 466.5 669 73.1
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 9.5e-127 458.4 683 72.5
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 8.1e-126 455.3 665 71.6
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 3.1e-125 453.4 696 69.7
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 5.2e-125 452.6 677 70.5
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 5.2e-125 452.6 312 80.1
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 1.5e-124 451.1 672 63.4
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 2.0e-124 450.7 670 72.2
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 4.4e-124 449.5 674 73.6
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 2.9e-123 446.8 671 72.4
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 2.9e-123 446.8 672 72.5
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 4.9e-123 446.0 674 70.2
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 1.4e-122 444.5 674 73.4
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 2.7e-121 440.3 672 70.1
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 1.7e-120 437.6 677 70.5
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.0e-120 436.8 668 71.0
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 5.1e-120 436.0 660 72.3
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 5.1e-120 436.0 665 74.4
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 8.6e-120 435.3 696 71.1
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 4.3e-119 433.0 664 69.3
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 7.3e-119 432.2 660 69.5
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 1.6e-118 431.0 680 69.7
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 2.1e-118 430.6 692 70.2
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 2.8e-118 430.3 664 69.7
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 8.1e-118 428.7 706 57.4
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 1.4e-117 427.9 667 68.8
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 5.2e-117 426.0 677 51.7
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.8e-117 425.6 544 62.7
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 4.4e-116 422.9 638 73.2
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 4.4e-116 422.9 663 70.7
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 4.4e-116 422.9 667 68.5
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 7.6e-116 422.2 668 69.8
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 7.6e-116 422.2 652 71.8
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 1.7e-115 421.0 667 72.1
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 1.7e-115 421.0 683 69.7
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 4.9e-115 419.5 590 74.1
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 1.4e-114 417.9 681 70.0
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 9.2e-114 415.2 641 73.2
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 1.2e-113 414.8 625 72.8
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 1.6e-113 414.5 687 67.8
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 1.6e-113 414.5 653 69.2
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 1.6e-113 414.5 660 69.4
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 2.7e-113 413.7 667 69.6
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 7.8e-113 412.1 538 77.3
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.3e-112 411.4 668 69.6
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 1.7e-112 411.0 642 70.6
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 1.7e-112 411.0 678 68.1
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 2.3e-112 410.6 639 71.8
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 6.6e-112 409.1 660 71.1
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 1.1e-111 408.3 674 66.0
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 1.9e-111 407.5 698 65.3
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 3.3e-111 406.8 656 70.4
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 6.2e-110 402.5 637 69.2
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 1.1e-109 401.7 543 75.9
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 3.1e-109 400.2 702 55.0
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 1.2e-108 398.3 710 65.9
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 1.3e-107 394.8 690 51.6
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 2.9e-107 393.7 630 70.0
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 1.9e-106 391.0 676 70.0
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 4.2e-106 389.8 678 67.4
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 9.3e-106 388.7 629 69.8
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 1.2e-105 388.3 771 53.3
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 2.1e-105 387.5 698 55.4
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 1.9e-103 380.9 655 69.9
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 1.9e-103 380.9 515 78.4
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 2.5e-103 380.6 650 69.2
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 7.3e-103 379.0 636 68.4
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 1.6e-102 377.9 526 66.3
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 4.8e-102 376.3 686 48.1
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 5.3e-101 372.9 633 68.6
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 7.6e-100 369.0 693 63.5
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 9.9e-100 368.6 694 63.4
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 2.4e-98 364.0 665 67.7
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 7.1e-98 362.5 661 59.9
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 8.7e-96 355.5 470 80.4
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 7.4e-95 352.4 660 63.9
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 3.4e-92 343.6 713 44.6
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 2.2e-91 340.9 665 66.8
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 5.5e-90 336.3 644 41.3
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 8.7e-88 328.9 801 41.7
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 1.9e-82 311.2 830 42.4
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 1.6e-81 308.1 693 63.2
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 6.5e-75 286.2 576 64.9
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 1.4e-74 285.0 381 74.8
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 1.9e-74 284.6 461 75.9
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 2.1e-73 281.2 572 66.3
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 4.5e-68 263.5 467 73.7
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.9e-66 258.1 441 76.0
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 5.7e-63 246.5 422 76.3
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 4.8e-62 243.4 439 73.8
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 1.3e-59 235.3 481 68.6
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 6.5e-59 233.0 145 79.3
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.5e-58 231.1 448 72.8
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 2.5e-58 231.1 420 43.3
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.2e-58 230.7 446 74.0
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 4.2e-58 230.3 343 48.4
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 1.6e-57 228.4 156 74.4
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.7e-54 218.4 448 67.6
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 8.2e-54 216.1 554 50.4
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 9.1e-53 212.6 342 43.3
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 7.7e-52 209.5 429 43.6
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 5.0e-51 206.8 213 55.4
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 4.2e-50 203.8 338 43.2
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 8.0e-49 199.5 151 67.5
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 8.2e-46 189.5 355 39.7
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 2.3e-40 171.4 118 69.5
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 7.7e-36 156.4 381 33.3
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 6.6e-35 153.3 365 46.0
Os01g0951000 Oryza sativa ssp. japonica HOM05D003406 ORTHO05D004026 1.1e-34 152.5 117 68.4
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 3.0e-32 144.4 188 46.8
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 4.0e-32 144.1 79 86.1
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 5.2e-32 143.7 385 74.5
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 3.4e-31 141.0 80 83.8
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 5.7e-31 140.2 375 75.5
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.3e-30 139.0 432 56.2
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.3e-30 136.7 135 54.8
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 2.5e-26 124.8 367 45.2
DCAR_031833 Daucus carota HOM05D003406 ORTHO05D004026 5.6e-26 123.6 283 41.3
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 7.3e-26 123.2 136 49.3
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-25 120.9 136 48.5
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 6.1e-25 120.2 134 50.0
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.0e-25 119.8 132 47.7
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-24 119.4 132 47.7
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.9e-24 116.3 132 46.2
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 4.4e-23 114.0 132 45.5
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 4.4e-23 114.0 132 45.5
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 6.4e-22 110.2 88 56.8
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 4.6e-20 104.0 382 30.1
BcaC05g28071 Brassica carinata HOM05D003406 ORTHO05D004026 6.0e-20 103.6 87 65.5
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 1.3e-19 102.4 301 35.9
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 3.0e-19 101.3 73 63.0
C07p49630 Brassica napus HOM05D003406 ORTHO05D004026 4.3e-18 97.4 123 50.4
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 4.3e-18 97.4 178 35.4
PSO782G3453 Papaver somniferum HOM05D003406 ORTHO05D004026 5.6e-18 97.1 256 35.9
C03p43350 Brassica napus HOM05D003406 ORTHO05D004026 1.2e-17 95.9 48 95.8
BolC3t16605H Brassica oleracea HOM05D003406 ORTHO05D004026 1.2e-17 95.9 48 95.8
SEGI_28398 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 6.2e-17 93.6 62 69.4
PGSC0003DMG400023151 Solanum tuberosum HOM05D003406 ORTHO05D004026 8.0e-17 93.2 253 37.2
Gohir.D10G058700 Gossypium hirsutum HOM05D003406 ORTHO05D004026 3.1e-16 91.3 74 66.2
Gorai.011G062800 Gossypium raimondii HOM05D003406 ORTHO05D004026 4.0e-16 90.9 73 65.8
SEGI_35311 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.0e-15 88.6 150 44.7
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 3.4e-15 87.8 53 66.0
SEGI_28183 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 9.8e-15 86.3 152 44.7
TPR.G20465 Trifolium pratense HOM05D003406 ORTHO05D004026 9.2e-13 79.7 53 79.2
Gohir.D04G052700 Gossypium hirsutum HOM05D003406 ORTHO05D004026 2.1e-12 78.6 59 67.8
Gorai.012G058900 Gossypium raimondii HOM05D003406 ORTHO05D004026 2.1e-12 78.6 59 67.8
Aa31LG8G12390 Aethionema arabicum HOM05D003406 ORTHO05D030983 7.8e-12 76.6 68 51.5
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-11 76.3 54 59.3
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-11 76.3 54 59.3
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-11 76.3 54 59.3
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-11 76.3 54 59.3
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-11 76.3 54 59.3
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-11 76.3 54 59.3
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-11 76.3 54 59.3
Actinidia10171 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.3e-11 75.9 121 43.8
Prupe.2G034000 Prunus persica HOM05D003614 ORTHO05D004156 1.7e-11 75.5 59 64.4
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.3e-11 75.1 54 57.4
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-10 72.8 81 59.3
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.9e-10 72.0 81 59.3
PSO561G0005 Papaver somniferum HOM05D003406 ORTHO05D004026 2.5e-10 71.6 209 34.4
C05p40950 Brassica napus HOM05D003406 ORTHO05D004026 2.1e-09 68.6 80 52.5


User provided reference genes

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