Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 1.4e-219 766.1 430 100.0
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 5.3e-211 737.6 446 89.2
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 1.6e-207 726.1 393 96.7
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 3.9e-206 721.5 430 96.3
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 7.4e-189 664.1 399 89.2
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 2.3e-182 642.5 449 82.6
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 6.5e-161 571.2 401 80.0
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 2.9e-153 545.8 401 76.6
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 1.4e-147 526.9 404 75.2
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 2.0e-146 523.1 398 75.1
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 1.6e-143 513.5 403 73.9
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 8.0e-143 511.1 448 67.2
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 5.0e-137 491.9 398 71.9
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 1.6e-135 486.9 405 71.1
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 2.2e-132 476.5 395 70.6
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 2.1e-114 416.8 393 64.9
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 3.5e-114 416.0 400 64.5
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 5.6e-112 408.7 400 64.0
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 5.6e-112 408.7 400 64.0
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 2.9e-100 369.8 397 57.9
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.6e-90 337.4 413 53.0
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 1.9e-80 303.9 391 50.9
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 1.9e-75 287.3 418 45.7
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 1.8e-73 280.8 409 46.5
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 2.3e-73 280.4 394 47.0
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 6.7e-73 278.9 404 46.3
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 6.7e-73 278.9 413 45.8
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 6.7e-73 278.9 411 45.3
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 7.4e-72 275.4 408 46.3
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 7.4e-72 275.4 400 46.8
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 1.1e-70 271.6 417 48.2
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 6.9e-70 268.9 362 48.6
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.2e-69 268.1 407 44.7
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 3.4e-69 266.5 362 48.3
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 7.7e-69 265.4 391 45.8
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 1.3e-68 264.6 401 44.4
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 2.2e-68 263.8 410 45.4
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 3.8e-68 263.1 423 43.3
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 2.1e-66 257.3 373 46.9
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 2.1e-66 257.3 409 43.5
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 3.6e-66 256.5 382 46.1
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 2.3e-65 253.8 406 42.9
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 5.1e-65 252.7 393 45.3
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 8.8e-65 251.9 408 44.1
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.5e-64 251.1 410 43.9
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 2.0e-64 250.8 348 48.6
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 2.2e-63 247.3 407 42.8
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 2.2e-63 247.3 372 45.2
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 4.8e-63 246.1 412 42.5
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 6.3e-63 245.7 382 44.2
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.4e-62 244.6 397 42.6
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 3.1e-62 243.4 403 42.9
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 5.3e-62 242.7 391 44.2
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 1.2e-61 241.5 402 42.3
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 1.5e-61 241.1 382 45.0
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 2.0e-61 240.7 363 43.5
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 5.9e-61 239.2 371 45.6
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 5.9e-61 239.2 393 42.7
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.0e-60 238.4 367 43.9
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 1.0e-60 238.4 422 42.2
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 1.0e-60 238.4 416 41.3
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.5e-59 234.6 404 41.1
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.9e-59 234.2 331 45.3
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 1.9e-59 234.2 425 41.2
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 2.5e-59 233.8 386 42.5
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.5e-59 233.8 331 45.3
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 5.5e-59 232.6 390 43.3
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 5.5e-59 232.6 404 43.8
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 9.4e-59 231.9 408 40.7
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 9.4e-59 231.9 369 42.5
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 1.6e-58 231.1 315 46.3
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 2.7e-58 230.3 389 42.4
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 8.0e-58 228.8 428 42.1
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 8.0e-58 228.8 367 42.5
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 5.2e-57 226.1 358 43.0
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 5.2e-57 226.1 408 39.0
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 8.8e-57 225.3 367 43.3
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 1.1e-56 224.9 379 39.6
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 1.5e-56 224.6 423 39.7
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 2.0e-56 224.2 374 42.0
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 4.4e-56 223.0 427 40.0
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 7.0e-54 215.7 398 40.7
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.6e-53 214.5 358 41.9
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.6e-53 214.5 358 41.9
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 2.6e-53 213.8 357 42.0
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 4.5e-53 213.0 366 41.0
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 5.9e-53 212.6 416 38.9
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 7.7e-53 212.2 386 41.7
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 2.2e-52 210.7 408 40.0
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 4.2e-51 206.5 307 43.6
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 7.2e-51 205.7 344 41.9
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 2.1e-50 204.1 343 41.1
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 6.1e-50 202.6 436 38.5
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 3.0e-49 200.3 410 36.8
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 2.6e-48 197.2 330 43.0
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 3.4e-48 196.8 401 36.9
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.7e-47 194.5 365 40.3
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.4e-46 191.4 362 38.7
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.8e-46 191.0 389 38.8
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 3.5e-45 186.8 386 38.9
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 4.7e-42 176.4 286 39.9
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.4e-40 170.2 402 38.1
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 1.3e-39 168.3 388 36.1
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 6.3e-39 166.0 252 42.1
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 6.3e-39 166.0 289 39.1
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 1.8e-38 164.5 383 36.6
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 4.1e-38 163.3 404 35.1
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 7.2e-35 152.5 343 34.1
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 4.7e-34 149.8 205 42.0
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 2.3e-33 147.5 311 33.4
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 8.9e-33 145.6 306 36.3
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 1.4e-30 138.3 360 36.7
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 1.8e-30 137.9 246 40.2
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 2.4e-30 137.5 293 36.2
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 1.5e-27 128.3 269 36.4
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 1.9e-27 127.9 220 39.1
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 4.3e-27 126.7 305 33.4
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 8.0e-26 122.5 192 40.6
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 5.2e-25 119.8 233 41.2
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 3.7e-23 113.6 248 35.1
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 2.4e-22 110.9 138 50.7
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 4.1e-22 110.2 264 35.6
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 5.4e-22 109.8 170 38.8
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 1.2e-21 108.6 197 41.6
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.2e-18 98.6 159 42.1
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 8.1e-18 95.9 392 28.1
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 1.2e-16 92.0 242 32.6
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 2.6e-16 90.9 145 46.9
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 4.9e-15 86.7 162 40.1
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 5.6e-11 73.2 125 43.2
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 6.2e-10 69.7 125 40.8
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 1.1e-06 58.9 81 45.7
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.4e-06 58.5 147 35.4


User provided reference genes

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