Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C03p05030 Brassica napus HOM05D004318 ORTHO05D019912 3.5e-46 188.0 97 100.0
C03p05040 Brassica napus HOM05D004318 ORTHO05D019912 3.5e-46 188.0 97 100.0
BcaB01g05537 Brassica carinata HOM05D004318 ORTHO05D019912 3.3e-36 154.8 118 77.1
A10p03880 Brassica napus HOM05D004318 ORTHO05D019912 3.2e-31 138.3 75 97.3
BolC5t29350H Brassica oleracea HOM05D004318 ORTHO05D019912 1.0e-13 80.1 51 88.2
BolC3t13033H Brassica oleracea HOM05D004318 ORTHO05D019912 8.7e-13 77.0 46 91.3
BraA10t42664Z Brassica rapa HOM05D004318 ORTHO05D019912 4.3e-12 74.7 46 89.1
Thhalv10000089m.g Eutrema salsugineum HOM05D004318 ORTHO05D005690 1.1e-10 70.1 52 76.9
Manes.04G086600 Manihot esculenta HOM05D004318 ORTHO05D005690 2.4e-10 68.9 53 71.7
Aa31LG7G15060 Aethionema arabicum HOM05D004318 ORTHO05D005690 3.1e-10 68.6 53 71.7
BcaC02g08787 Brassica carinata HOM05D004318 ORTHO05D005690 3.1e-10 68.6 52 75.0
BcaC07g41147 Brassica carinata HOM05D004318 ORTHO05D005690 3.1e-10 68.6 52 75.0
A04p16180 Brassica napus HOM05D004318 ORTHO05D005690 3.1e-10 68.6 52 75.0
A09p58220 Brassica napus HOM05D004318 ORTHO05D005690 3.1e-10 68.6 52 75.0
C04p50650 Brassica napus HOM05D004318 ORTHO05D005690 3.1e-10 68.6 52 75.0
C08p41520 Brassica napus HOM05D004318 ORTHO05D005690 3.1e-10 68.6 52 75.0
BolC4t26661H Brassica oleracea HOM05D004318 ORTHO05D005690 3.1e-10 68.6 52 75.0
BolC8t51713H Brassica oleracea HOM05D004318 ORTHO05D005690 3.1e-10 68.6 52 75.0
BraA04t17257Z Brassica rapa HOM05D004318 ORTHO05D005690 3.1e-10 68.6 52 75.0
BraA09t41210Z Brassica rapa HOM05D004318 ORTHO05D005690 3.1e-10 68.6 52 75.0
AL4G10650 Arabidopsis lyrata HOM05D004318 ORTHO05D005690 4.1e-10 68.2 52 73.1
AT2G21470 Arabidopsis thaliana HOM05D004318 ORTHO05D005690 4.1e-10 68.2 52 73.1
Sp4g00630 Schrenkiella parvula HOM05D004318 ORTHO05D005690 4.1e-10 68.2 52 73.1
Carub.0004s0051 Capsella rubella HOM05D004318 ORTHO05D005690 5.3e-10 67.8 52 73.1
Potri.009G120200 Populus trichocarpa HOM05D004318 ORTHO05D005690 5.3e-10 67.8 53 73.6
Manes.04G086800 Manihot esculenta HOM05D004318 ORTHO05D005690 6.9e-10 67.4 53 69.8
Atru.chr5.3085 Acer truncatum HOM05D004318 ORTHO05D005690 9.0e-10 67.0 53 71.7
Sabra04G0106100 Salix brachista HOM05D004318 ORTHO05D005690 9.0e-10 67.0 53 71.7
Potri.004G158900 Populus trichocarpa HOM05D004318 ORTHO05D005690 1.2e-09 66.6 53 71.7
Ciclev10028169m.g Citrus clementina HOM05D004318 ORTHO05D005690 2.6e-09 65.5 42 81.0
Psat4g193920 Pisum sativum HOM05D004318 ORTHO05D005690 2.6e-09 65.5 51 70.6
CARHR112390 Cardamine hirsuta HOM05D004318 ORTHO05D005690 3.4e-09 65.1 52 71.2
THA.LOC104807752 Tarenaya hassleriana HOM05D004318 ORTHO05D005690 3.4e-09 65.1 53 69.8
Hma1.2p1_0066F.1_g036090 Hydrangea macrophylla HOM05D004318 ORTHO05D005690 5.9e-09 64.3 53 67.9
TWI31G0084 Tripterygium wilfordii HOM05D004318 ORTHO05D005690 5.9e-09 64.3 53 69.8
TWI79G1546 Tripterygium wilfordii HOM05D004318 ORTHO05D005690 5.9e-09 64.3 53 69.8
Ca_23903_v3 Cicer arietinum L. HOM05D004318 ORTHO05D005690 7.6e-09 63.9 53 66.0
Duzib052G0126 Durio zibethinus HOM05D004318 ORTHO05D005690 7.6e-09 63.9 53 67.9
Duzib132G0379 Durio zibethinus HOM05D004318 ORTHO05D005690 7.6e-09 63.9 53 67.9
Gohir.A12G042300 Gossypium hirsutum HOM05D004318 ORTHO05D005690 7.6e-09 63.9 53 67.9
Gohir.D12G030000 Gossypium hirsutum HOM05D004318 ORTHO05D005690 7.6e-09 63.9 53 67.9
Gorai.008G030900 Gossypium raimondii HOM05D004318 ORTHO05D005690 7.6e-09 63.9 53 67.9
Hma1.2p1_2529F.1_g323970 Hydrangea macrophylla HOM05D004318 ORTHO05D005690 7.6e-09 63.9 51 70.6
Medtr8g037355 Medicago truncatula HOM05D004318 ORTHO05D005690 7.6e-09 63.9 53 66.0
TPR.G1833 Trifolium pratense HOM05D004318 ORTHO05D005690 7.6e-09 63.9 53 66.0
Glyma.12G236000 Glycine max HOM05D004318 ORTHO05D005690 1.3e-08 63.2 53 64.2
Prupe.8G090100 Prunus persica HOM05D004318 ORTHO05D005690 1.3e-08 63.2 53 67.9
Cpa.g.sc1026.1 Carica papaya HOM05D004318 ORTHO05D005690 1.7e-08 62.8 53 67.9
Lj9C377G29 Lonicera japonica HOM05D004318 ORTHO05D005690 1.7e-08 62.8 53 66.0
Nn7g37293 Nelumbo nucifera HOM05D004318 ORTHO05D005690 1.7e-08 62.8 53 66.0
Peaxi162Scf00016g00424 Petunia axillaris HOM05D004318 ORTHO05D005690 1.7e-08 62.8 53 66.0
TAR381G1154 Trochodendron aralioides HOM05D004318 ORTHO05D005690 1.7e-08 62.8 53 67.9
GSVIVG01023831001 Vitis vinifera HOM05D004318 ORTHO05D005690 1.7e-08 62.8 53 64.2
Actinidia02232 Actinidia chinensis HOM05D004318 ORTHO05D005690 2.2e-08 62.4 53 66.0
CSS0003672 Camellia sinensis var. sinensis HOM05D004318 ORTHO05D005690 2.2e-08 62.4 53 66.0
CSS0008255 Camellia sinensis var. sinensis HOM05D004318 ORTHO05D005690 2.2e-08 62.4 53 66.0
Hma1.2p1_0851F.1_g228380 Hydrangea macrophylla HOM05D004318 ORTHO05D005690 2.2e-08 62.4 52 65.4
Sabra09G0092500 Salix brachista HOM05D004318 ORTHO05D005690 2.2e-08 62.4 47 78.7
Solyc01g109960.3 Solanum lycopersicum HOM05D004318 ORTHO05D005690 2.2e-08 62.4 53 66.0
Sopen01g052150 Solanum pennellii HOM05D004318 ORTHO05D005690 2.2e-08 62.4 53 66.0
PGSC0003DMG400030951 Solanum tuberosum HOM05D004318 ORTHO05D005690 2.2e-08 62.4 53 66.0
vmacro02077 Vaccinium macrocarpon HOM05D004318 ORTHO05D005690 2.2e-08 62.4 53 66.0
Gohir.A03G197000 Gossypium hirsutum HOM05D004318 ORTHO05D005690 2.9e-08 62.0 53 66.0
Gohir.D02G218400 Gossypium hirsutum HOM05D004318 ORTHO05D005690 2.9e-08 62.0 53 66.0
Gorai.005G246300 Gossypium raimondii HOM05D004318 ORTHO05D005690 2.9e-08 62.0 53 66.0
Lj3g0018181 Lotus japonicus HOM05D004318 ORTHO05D005690 2.9e-08 62.0 53 66.0
Rhsim11G0180700 Rhododendron simsii HOM05D004318 ORTHO05D005690 2.9e-08 62.0 53 66.0
Aqoxy5G01543 Aquilegia oxysepala HOM05D004318 ORTHO05D005690 3.8e-08 61.6 53 66.0
MSTRG.16828 Avicennia marina HOM05D004318 ORTHO05D005690 3.8e-08 61.6 53 64.2
Lalb_Chr19g0132281 Lupinus albus HOM05D004318 ORTHO05D005690 3.8e-08 61.6 53 62.3
MD05G1060400 Malus domestica HOM05D004318 ORTHO05D005690 3.8e-08 61.6 53 66.0
MD10G1068200 Malus domestica HOM05D004318 ORTHO05D005690 3.8e-08 61.6 53 66.0
Oeu041617.2 Olea europaea HOM05D004318 ORTHO05D005690 3.8e-08 61.6 53 66.0
Sc18g0005150 Simmondsia chinensis HOM05D004318 ORTHO05D005690 3.8e-08 61.6 53 66.0
CANSAT11G1266 Cannabis sativa HOM05D004318 ORTHO05D005690 5.0e-08 61.2 53 64.2
Cfa005060 Carpinus fangiana HOM05D004318 ORTHO05D005690 5.0e-08 61.2 53 64.2
CiPaw.05G070100 Carya illinoinensis HOM05D004318 ORTHO05D005690 5.0e-08 61.2 53 64.2
Cc02_g17210 Coffea canephora HOM05D004318 ORTHO05D005690 5.0e-08 61.2 53 64.2
Haze_02323 Corylus avellana HOM05D004318 ORTHO05D005690 5.0e-08 61.2 53 64.2
DCAR_003656 Daucus carota HOM05D004318 ORTHO05D005690 5.0e-08 61.2 53 64.2
Duzib248G1279 Durio zibethinus HOM05D004318 ORTHO05D005690 5.0e-08 61.2 53 64.2
Glyma.13G201500 Glycine max HOM05D004318 ORTHO05D005690 5.0e-08 61.2 53 62.3
Nitab4.5_0003234g0050 Nicotiana tabacum HOM05D004318 ORTHO05D005690 5.0e-08 61.2 53 64.2
Nitab4.5_0005796g0010 Nicotiana tabacum HOM05D004318 ORTHO05D005690 5.0e-08 61.2 53 64.2
Oeu061228.2 Olea europaea HOM05D004318 ORTHO05D005690 5.0e-08 61.2 53 64.2
QL11p045146 Quercus lobata HOM05D004318 ORTHO05D005690 5.0e-08 61.2 53 64.2
QL11p045270 Quercus lobata HOM05D004318 ORTHO05D005690 5.0e-08 61.2 53 64.2
Actinidia00553 Actinidia chinensis HOM05D004318 ORTHO05D005690 6.5e-08 60.8 51 66.7
Dinv23486 Davidia involucrata HOM05D004318 ORTHO05D005690 6.5e-08 60.8 52 65.4
Lalb_Chr01g0007991 Lupinus albus HOM05D004318 ORTHO05D005690 6.5e-08 60.8 53 60.4
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 6.5e-08 60.8 55 58.2
Thecc.02G080000 Theobroma cacao HOM05D004318 ORTHO05D005690 6.5e-08 60.8 53 66.0
Actinidia07486 Actinidia chinensis HOM05D004318 ORTHO05D005690 8.5e-08 60.5 42 71.4
Actinidia33407 Actinidia chinensis HOM05D004318 ORTHO05D005690 8.5e-08 60.5 42 71.4
Dinv42035 Davidia involucrata HOM05D004318 ORTHO05D005690 8.5e-08 60.5 52 65.4
Eucgr.G01699 Eucalyptus grandis HOM05D004318 ORTHO05D005690 8.5e-08 60.5 42 73.8
TAR376G0887 Trochodendron aralioides HOM05D004318 ORTHO05D005690 8.5e-08 60.5 53 66.0
TAR625G1297 Trochodendron aralioides HOM05D004318 ORTHO05D005690 8.5e-08 60.5 51 66.7
Zm00001eb108060 Zea mays HOM05D004318 ORTHO05D005690 8.5e-08 60.5 53 64.2
arahy.Tifrunner.gnm1.ann1.2GC3QC Arachis hypogaea HOM05D004318 ORTHO05D005690 1.1e-07 60.1 53 62.3
arahy.Tifrunner.gnm1.ann1.7SB82T Arachis hypogaea HOM05D004318 ORTHO05D005690 1.1e-07 60.1 53 62.3
AUR62011281 Chenopodium quinoa HOM05D004318 ORTHO05D005690 1.1e-07 60.1 49 69.4
Lalb_Chr03g0032931 Lupinus albus HOM05D004318 ORTHO05D005690 1.1e-07 60.1 53 62.3
Phvul.011G210500 Phaseolus vulgaris HOM05D004318 ORTHO05D005690 1.1e-07 60.1 49 67.3
PGR042G0537 Punica granatum HOM05D004318 ORTHO05D005690 1.1e-07 60.1 53 62.3
SGA_v2.0_scaffold58G20499 Striga asiatica HOM05D004318 ORTHO05D005690 1.1e-07 60.1 53 62.3
VMungo1127G0950 Vigna mungo HOM05D004318 ORTHO05D005690 1.1e-07 60.1 49 67.3
CAN.G1544.10 Capsicum annuum HOM05D004318 ORTHO05D005690 1.4e-07 59.7 52 63.5
CsaV3_2G015050 Cucumis sativus L. HOM05D004318 ORTHO05D005690 1.4e-07 59.7 52 63.5
Sed0003378 Sechium edule HOM05D004318 ORTHO05D005690 1.4e-07 59.7 52 63.5
Zm00001eb325940 Zea mays HOM05D004318 ORTHO05D005690 1.4e-07 59.7 53 64.2
CiPaw.06G132400 Carya illinoinensis HOM05D004318 ORTHO05D005690 1.9e-07 59.3 53 62.3
ClCG11G004120 Citrullus lanatus HOM05D004318 ORTHO05D005690 1.9e-07 59.3 50 66.0
MELO3C023325.2 Cucumis melo HOM05D004318 ORTHO05D005690 1.9e-07 59.3 52 61.5
Sed0019695 Sechium edule HOM05D004318 ORTHO05D005690 1.9e-07 59.3 42 71.4
Hund06250 Selenicereus undatus HOM05D004318 ORTHO05D005690 1.9e-07 59.3 47 74.5
unitig_21.g20793 Utricularia gibba HOM05D004318 ORTHO05D005690 1.9e-07 59.3 42 73.8
EL10Ac9g21687 Beta vulgaris HOM05D004318 ORTHO05D005690 2.5e-07 58.9 54 66.7
MBI11_g32384_MAGBIO Magnolia biondii HOM05D004318 ORTHO05D005690 2.5e-07 58.9 52 65.4
AUR62016776 Chenopodium quinoa HOM05D004318 ORTHO05D005690 3.2e-07 58.5 48 68.8
ECA236G2358 Erigeron canadensis HOM05D004318 ORTHO05D005690 3.2e-07 58.5 47 72.3
Migut.B00206 Erythranthe guttata HOM05D004318 ORTHO05D005690 3.2e-07 58.5 53 58.5
Lsat_1_v5_gn_7_91601 Lactuca sativa HOM05D004318 ORTHO05D005690 3.2e-07 58.5 47 72.3
SMO365G0074 Selaginella moellendorffii HOM05D004318 ORTHO05D005690 3.2e-07 58.5 48 64.6
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 4.2e-07 58.2 55 54.5
FAN24G3142 Fragaria x ananassa HOM05D004318 ORTHO05D005690 4.2e-07 58.2 51 62.7
Psat7g202400 Pisum sativum HOM05D004318 ORTHO05D005690 4.2e-07 58.2 42 66.7
CDE05G2827 Ceratophyllum demersum HOM05D004318 ORTHO05D005690 5.5e-07 57.8 53 62.3
FvH4_2g09750 Fragaria vesca HOM05D004318 ORTHO05D005690 5.5e-07 57.8 51 62.7
FAN15G3707 Fragaria x ananassa HOM05D004318 ORTHO05D005690 5.5e-07 57.8 51 62.7
FAN20G2962 Fragaria x ananassa HOM05D004318 ORTHO05D005690 5.5e-07 57.8 51 62.7
FAN24G0421 Fragaria x ananassa HOM05D004318 ORTHO05D005690 5.5e-07 57.8 51 62.7
FAN27G0594 Fragaria x ananassa HOM05D004318 ORTHO05D005690 5.5e-07 57.8 51 62.7
RcHm_v2.0_Chr6g0266041 Rosa chinensis HOM05D004318 ORTHO05D005690 5.5e-07 57.8 51 62.7
HPP92_011807 Vanilla planifolia HOM05D004318 ORTHO05D005690 7.2e-07 57.4 53 62.3
HPP92_011808 Vanilla planifolia HOM05D004318 ORTHO05D005690 7.2e-07 57.4 53 62.3
Ah.01g019090 Amaranthus hybridus HOM05D004318 ORTHO05D005690 1.2e-06 56.6 49 67.3
ATR0665G307 Amborella trichopoda HOM05D004318 ORTHO05D005690 1.2e-06 56.6 57 56.1
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 1.2e-06 56.6 54 55.6
SEGI_30924 Sequoiadendron giganteum HOM05D004318 ORTHO05D005690 1.6e-06 56.2 51 58.8
unitig_0.g58 Utricularia gibba HOM05D004318 ORTHO05D005690 1.6e-06 56.2 52 57.7
HanXRQChr16g0505381 Helianthus annuus HOM05D004318 ORTHO05D005690 2.1e-06 55.8 76 52.6
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 2.7e-06 55.5 53 54.7
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 2.7e-06 55.5 53 54.7
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 2.7e-06 55.5 53 54.7
PSO731G0114 Papaver somniferum HOM05D004318 ORTHO05D005690 2.7e-06 55.5 47 68.1
PSO764G0293 Papaver somniferum HOM05D004318 ORTHO05D005690 2.7e-06 55.5 47 68.1
AagrBONN_evm.TU.Sc2ySwM_368.2571 Anthoceros agrestis HOM05D004318 ORTHO05D005690 3.6e-06 55.1 47 61.7
Mapoly0015s0126 Marchantia polymorpha HOM05D004318 ORTHO05D005690 3.6e-06 55.1 38 68.4
Actinidia01778 Actinidia chinensis HOM05D000001 ORTHO05D009667 6.1e-06 54.3 51 58.8
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 7.9e-06 53.9 55 56.4
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 7.9e-06 53.9 62 46.8


User provided reference genes

Program Settings