Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 1.1e-212 743.0 386 100.0
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 7.3e-212 740.3 386 99.5
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 7.3e-212 740.3 386 99.5
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 9.2e-207 723.4 392 96.9
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 2.1e-206 722.2 393 96.7
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 6.0e-190 667.5 405 90.4
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.8e-186 656.0 402 86.8
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 6.9e-186 654.1 398 86.2
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 2.6e-185 652.1 374 88.2
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 4.5e-185 651.4 403 85.9
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 7.6e-185 650.6 405 87.4
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.5e-172 609.8 417 78.9
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.5e-164 582.4 368 81.0
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 2.1e-158 562.8 380 76.8
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 7.4e-156 554.3 415 73.7
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 4.1e-154 548.5 396 73.2
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 4.7e-150 535.0 393 72.3
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 2.3e-149 532.7 363 75.2
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 3.0e-149 532.3 362 74.6
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 2.6e-148 529.3 419 69.0
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 2.6e-148 529.3 364 75.0
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 1.4e-146 523.5 386 70.7
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 3.1e-146 522.3 366 72.7
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 5.5e-143 511.5 421 69.1
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 1.6e-142 510.0 400 71.0
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.4e-141 506.9 399 72.4
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 2.0e-140 503.1 391 69.3
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 4.4e-140 501.9 398 70.4
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 7.5e-140 501.1 365 72.6
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 9.7e-140 500.7 359 72.4
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 9.7e-140 500.7 389 67.6
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 1.7e-139 500.0 359 72.4
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 4.8e-139 498.4 394 66.0
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 1.8e-138 496.5 384 67.2
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 3.1e-138 495.7 387 67.2
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 1.2e-137 493.8 394 66.2
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 2.7e-137 492.7 429 64.3
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 2.7e-137 492.7 418 67.0
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 7.7e-137 491.1 372 68.8
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 1.7e-136 490.0 378 68.0
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 2.2e-136 489.6 387 67.7
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 8.5e-136 487.6 416 65.1
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 8.5e-136 487.6 386 64.5
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 1.9e-135 486.5 394 65.5
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 1.9e-135 486.5 395 66.8
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 5.5e-135 485.0 407 63.4
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 7.2e-135 484.6 384 64.8
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 7.2e-135 484.6 426 65.7
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 1.2e-134 483.8 396 65.2
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 2.1e-134 483.0 380 64.7
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 2.7e-134 482.6 379 64.6
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.3e-133 479.6 398 64.8
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 2.3e-133 479.6 396 63.4
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 2.3e-133 479.6 384 63.8
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 3.0e-133 479.2 417 64.7
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 4.0e-133 478.8 420 64.8
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 5.2e-133 478.4 392 65.6
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 1.2e-132 477.2 423 63.4
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 1.5e-132 476.9 386 65.5
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 5.7e-132 474.9 395 64.6
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 9.8e-132 474.2 385 64.4
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 2.2e-131 473.0 390 65.4
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 2.8e-131 472.6 388 63.1
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 3.7e-131 472.2 394 63.2
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 3.7e-131 472.2 386 66.1
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 3.7e-131 472.2 388 62.4
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 4.1e-130 468.8 427 63.2
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.6e-129 466.8 393 63.4
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 2.0e-129 466.5 384 64.1
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 2.7e-129 466.1 400 63.0
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 3.5e-129 465.7 386 64.5
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 3.5e-129 465.7 426 62.0
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 3.5e-129 465.7 386 64.5
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.5e-129 465.3 386 64.5
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 4.5e-129 465.3 383 62.9
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 4.5e-129 465.3 425 60.2
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 4.5e-129 465.3 387 64.6
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 7.7e-129 464.5 390 63.1
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 7.7e-129 464.5 390 63.1
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 7.7e-129 464.5 395 64.1
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 1.0e-128 464.2 424 62.7
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 3.2e-127 459.1 386 65.0
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 3.2e-127 459.1 420 61.7
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 5.5e-127 458.4 426 60.8
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 7.2e-127 458.0 385 62.9
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 9.5e-127 457.6 386 63.7
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 1.2e-126 457.2 376 63.0
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 2.8e-126 456.1 424 62.3
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 4.0e-125 452.2 408 63.7
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 2.0e-124 449.9 394 61.4
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 3.4e-124 449.1 391 61.4
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 4.4e-124 448.7 377 63.1
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.7e-123 446.8 403 60.3
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 4.9e-123 445.3 389 61.2
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 1.8e-122 443.4 350 64.3
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 2.4e-122 443.0 385 62.9
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 5.4e-122 441.8 368 62.0
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 7.0e-122 441.4 383 61.4
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 9.2e-122 441.0 409 58.9
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 2.0e-121 439.9 413 58.4
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 2.0e-121 439.9 420 58.1
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 1.0e-120 437.6 393 63.4
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 1.3e-120 437.2 399 59.1
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 2.3e-120 436.4 428 60.0
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 2.5e-119 433.0 357 62.5
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 3.6e-118 429.1 376 62.2
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 4.9e-115 418.7 379 59.6
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.1e-114 417.5 363 58.7
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.4e-114 417.2 363 58.7
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 2.0e-113 413.3 436 58.9
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.7e-113 412.9 363 57.9
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 1.7e-112 410.2 398 59.0
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 2.0e-108 396.7 361 58.2
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 2.6e-108 396.4 361 59.0
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.3e-107 394.0 392 55.1
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 7.3e-103 378.3 451 50.6
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 6.2e-102 375.2 363 56.2
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 1.3e-99 367.5 369 54.5
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.4e-98 364.0 322 59.9
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 7.1e-98 361.7 286 65.7
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.8e-94 349.7 390 49.2
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 6.2e-86 322.0 307 58.0
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 5.6e-71 272.3 421 42.0
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 2.9e-67 260.0 239 59.4
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.1e-65 253.8 313 46.6
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 3.9e-64 249.6 375 39.5
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 3.3e-63 246.5 210 61.4
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 2.5e-58 230.3 214 53.7
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.6e-57 227.6 150 76.0
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 3.9e-56 223.0 219 58.0
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 1.3e-54 218.0 149 75.8
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 9.0e-53 211.8 186 68.3
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 5.9e-52 209.1 157 70.7
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 1.8e-45 187.6 145 67.6
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 1.0e-43 181.8 288 36.5
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 2.5e-42 177.2 206 50.0
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 1.5e-39 167.9 356 31.5
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 1.5e-18 98.2 111 53.2
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 7.2e-18 95.9 65 75.4
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 7.5e-15 85.9 75 56.0
C08p14660 Brassica napus HOM05D023945 ORTHO05D042485 4.7e-09 66.6 47 66.0
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 5.2e-08 63.2 292 26.7
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 1.2e-07 62.0 36 66.7
BolC2t06649H Brassica oleracea HOM05D023945 ORTHO05D042485 9.8e-07 58.9 45 62.2
BolC8t49106H Brassica oleracea HOM05D023945 ORTHO05D106848 2.2e-06 57.8 44 63.6


User provided reference genes

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