Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p48630 Brassica napus HOM05D030564 ORTHO05D027736 2.2e-120 435.6 220 100.0
BolC2t10955H Brassica oleracea HOM05D030564 ORTHO05D027736 4.8e-99 364.8 194 95.4
BcaC03g16956 Brassica carinata HOM05D030564 ORTHO05D027736 1.7e-40 170.2 84 100.0
BcaC03g16952 Brassica carinata HOM05D000268 ORTHO05D024347 2.7e-33 146.4 290 34.5
C02p48580 Brassica napus HOM05D000268 ORTHO05D024347 2.7e-33 146.4 290 34.5
Sp2g11970 Schrenkiella parvula HOM05D000268 ORTHO05D000261 3.0e-16 89.7 115 47.8
Thhalv10000892m.g Eutrema salsugineum HOM05D000268 ORTHO05D000261 3.3e-15 86.3 145 42.8
BolC2t10892H Brassica oleracea HOM05D000268 ORTHO05D024347 4.3e-15 85.9 71 56.3
BolC2t10904H Brassica oleracea HOM05D000268 ORTHO05D024347 4.3e-15 85.9 71 56.3
AL8G10940 Arabidopsis lyrata HOM05D000268 ORTHO05D000261 5.6e-15 85.5 150 39.3
BcaC06g34280 Brassica carinata HOM05D000268 ORTHO05D000261 3.6e-14 82.8 91 46.2
C07p30840 Brassica napus HOM05D000268 ORTHO05D000261 6.2e-14 82.0 138 38.4
BolC7t43626H Brassica oleracea HOM05D000268 ORTHO05D000261 6.2e-14 82.0 138 38.4
BraA06t27395Z Brassica rapa HOM05D000268 ORTHO05D000261 8.0e-14 81.6 138 38.4
Carub.0008s0061 Capsella rubella HOM05D000268 ORTHO05D000261 1.0e-13 81.3 136 39.7
Thhalv10011965m.g Eutrema salsugineum HOM05D000268 ORTHO05D000261 1.0e-13 81.3 109 43.1
AL2G30440 Arabidopsis lyrata HOM05D000268 ORTHO05D000261 1.4e-13 80.9 198 29.8
C07p30860 Brassica napus HOM05D000268 ORTHO05D000261 1.4e-13 80.9 91 45.1
BolC7t43627H Brassica oleracea HOM05D000268 ORTHO05D000261 1.4e-13 80.9 91 45.1
Sp7g06910 Schrenkiella parvula HOM05D030564 ORTHO05D027736 1.4e-13 80.9 96 43.8
A02p30900 Brassica napus HOM05D000268 ORTHO05D000261 1.8e-13 80.5 153 35.9
A06p45250 Brassica napus HOM05D000268 ORTHO05D000261 1.8e-13 80.5 138 37.7
Thhalv10011938m.g Eutrema salsugineum HOM05D000268 ORTHO05D000261 2.3e-13 80.1 109 42.2
BcaC03g16946 Brassica carinata HOM05D000268 ORTHO05D000261 3.1e-13 79.7 153 35.3
C02p48510 Brassica napus HOM05D000268 ORTHO05D000261 3.1e-13 79.7 153 35.3
BolC2t10883H Brassica oleracea HOM05D000268 ORTHO05D000261 3.1e-13 79.7 153 35.3
BraA02t08102Z Brassica rapa HOM05D000268 ORTHO05D000261 3.1e-13 79.7 153 35.3
BraA06t27394Z Brassica rapa HOM05D000268 ORTHO05D000261 4.0e-13 79.3 91 44.0
AL4G42560 Arabidopsis lyrata HOM05D000268 ORTHO05D000261 8.9e-13 78.2 137 39.4
Thhalv10012066m.g Eutrema salsugineum HOM05D000268 ORTHO05D000261 1.2e-12 77.8 109 41.3
CARHR174200 Cardamine hirsuta HOM05D000268 ORTHO05D000261 1.5e-12 77.4 90 42.2
CARHR174230 Cardamine hirsuta HOM05D000268 ORTHO05D000261 2.0e-12 77.0 136 36.0
Sp2g11960 Schrenkiella parvula HOM05D000268 ORTHO05D000261 2.6e-12 76.6 90 46.7
Aa31sc639G10 Aethionema arabicum HOM05D000268 ORTHO05D000261 4.4e-12 75.9 91 45.1
Aa31sc85G10 Aethionema arabicum HOM05D000268 ORTHO05D000261 4.4e-12 75.9 91 46.2
A06p45240 Brassica napus HOM05D000268 ORTHO05D000261 4.4e-12 75.9 91 41.8
Thhalv10003056m.g Eutrema salsugineum HOM05D000268 ORTHO05D000261 4.4e-12 75.9 242 27.7
Aa31sc198G50 Aethionema arabicum HOM05D000268 ORTHO05D000261 7.5e-12 75.1 91 44.0
BcaC03g16947 Brassica carinata HOM05D000268 ORTHO05D000261 7.5e-12 75.1 90 43.3
A02p30910 Brassica napus HOM05D000268 ORTHO05D000261 7.5e-12 75.1 190 28.9
C02p48520 Brassica napus HOM05D000268 ORTHO05D000261 7.5e-12 75.1 90 43.3
BolC2t10884H Brassica oleracea HOM05D000268 ORTHO05D000261 7.5e-12 75.1 90 43.3
Thhalv10000953m.g Eutrema salsugineum HOM05D000268 ORTHO05D000261 7.5e-12 75.1 203 31.5
Aa31sc85G80 Aethionema arabicum HOM05D000268 ORTHO05D000261 9.8e-12 74.7 172 29.7
Thhalv10000963m.g Eutrema salsugineum HOM05D000268 ORTHO05D000261 9.8e-12 74.7 202 30.7
AT5G47150 Arabidopsis thaliana HOM05D000268 ORTHO05D000261 1.3e-11 74.3 170 31.2
BcaC06g31411 Brassica carinata HOM05D000268 ORTHO05D000261 1.3e-11 74.3 111 41.4
Thhalv10001149m.g Eutrema salsugineum HOM05D000268 ORTHO05D000261 1.7e-11 73.9 92 45.7
BraA02t08103Z Brassica rapa HOM05D000268 ORTHO05D000261 3.7e-11 72.8 166 31.9
AT5G47160 Arabidopsis thaliana HOM05D000268 ORTHO05D000261 4.9e-11 72.4 91 42.9
Carub.0008s0060 Capsella rubella HOM05D000268 ORTHO05D000261 8.3e-11 71.6 88 42.0
Aa31sc85G140 Aethionema arabicum HOM05D000268 ORTHO05D000261 1.1e-10 71.2 172 30.2
AUR62017538 Chenopodium quinoa HOM05D000268 ORTHO05D000261 1.2e-09 67.8 190 28.9
Ciclev10023329m.g Citrus clementina HOM05D000268 ORTHO05D000261 2.0e-09 67.0 89 43.8
Eucgr.J00565 Eucalyptus grandis HOM05D000268 ORTHO05D000261 2.7e-09 66.6 90 44.4
RcHm_v2.0_Chr1g0325811 Rosa chinensis HOM05D000268 ORTHO05D000261 2.7e-09 66.6 88 46.6
AL8G10930 Arabidopsis lyrata HOM05D000268 ORTHO05D000261 3.5e-09 66.2 92 42.4
Sopen08g026450 Solanum pennellii HOM05D000268 ORTHO05D000261 3.5e-09 66.2 155 31.6
Solyc08g077940.2 Solanum lycopersicum HOM05D000268 ORTHO05D000261 7.8e-09 65.1 90 42.2
CDE02G0222 Ceratophyllum demersum HOM05D000268 ORTHO05D000261 1.0e-08 64.7 89 40.4
SGA_v2.0_scaffold280G46839 Striga asiatica HOM05D000268 ORTHO05D000261 1.7e-08 63.9 119 37.8
TAR629G0829 Trochodendron aralioides HOM05D000268 ORTHO05D000261 1.7e-08 63.9 89 42.7
AT2G35160 Arabidopsis thaliana HOM05D000268 ORTHO05D000261 2.3e-08 63.5 92 43.5
CDE11G0600 Ceratophyllum demersum HOM05D000268 ORTHO05D000261 2.3e-08 63.5 89 40.4
Gohir.A03G211600 Gossypium hirsutum HOM05D000268 ORTHO05D000261 2.3e-08 63.5 85 43.5
SHI35546 Sapria himalayana HOM05D000268 ORTHO05D000261 3.0e-08 63.2 89 42.7
EL10Ac9g22755 Beta vulgaris HOM05D000268 ORTHO05D000261 3.9e-08 62.8 89 37.1
BolC4t22956H Brassica oleracea HOM05D000268 ORTHO05D000261 3.9e-08 62.8 95 38.9
BcaC02g11587 Brassica carinata HOM05D000268 ORTHO05D000261 5.0e-08 62.4 95 38.9
C04p13660 Brassica napus HOM05D000268 ORTHO05D000261 5.0e-08 62.4 95 38.9
DCAR_004590 Daucus carota HOM05D000268 ORTHO05D000261 6.6e-08 62.0 89 42.7
unitig_60.g25663 Utricularia gibba HOM05D000268 ORTHO05D000261 6.6e-08 62.0 83 47.0
PGSC0003DMG400026247 Solanum tuberosum HOM05D000268 ORTHO05D000261 8.6e-08 61.6 90 41.1
Duzib205G1111 Durio zibethinus HOM05D000268 ORTHO05D000261 1.1e-07 61.2 105 34.3
Rhsim03G0159600 Rhododendron simsii HOM05D000268 ORTHO05D000261 1.1e-07 61.2 90 41.1
THA.LOC104813338 Tarenaya hassleriana HOM05D000268 ORTHO05D000261 1.1e-07 61.2 91 38.5
TWI81G0213 Tripterygium wilfordii HOM05D000268 ORTHO05D000261 1.1e-07 61.2 133 33.8
BcaB02g09471 Brassica carinata HOM05D000268 ORTHO05D000261 1.5e-07 60.8 94 39.4
Glyma.11G040100 Glycine max HOM05D000268 ORTHO05D000261 1.5e-07 60.8 88 42.0
SGA_v2.0_scaffold27G11512 Striga asiatica HOM05D000268 ORTHO05D000261 1.5e-07 60.8 154 33.8
Eucgr.J00659 Eucalyptus grandis HOM05D000268 ORTHO05D000261 1.9e-07 60.5 89 41.6
Nn6g33776 Nelumbo nucifera HOM05D000268 ORTHO05D000261 1.9e-07 60.5 90 42.2
PSO478G5085 Papaver somniferum HOM05D000268 ORTHO05D000261 1.9e-07 60.5 171 32.2
COL.COLO4_17872 Corchorus olitorius HOM05D000268 ORTHO05D000261 2.5e-07 60.1 137 29.2
PSO017G3826 Papaver somniferum HOM05D000268 ORTHO05D000261 3.3e-07 59.7 175 30.3
PGR042G0065 Punica granatum HOM05D000268 ORTHO05D000261 3.3e-07 59.7 89 39.3
A05p10570 Brassica napus HOM05D000268 ORTHO05D000261 4.3e-07 59.3 95 37.9
BraA05t19997Z Brassica rapa HOM05D000268 ORTHO05D000261 4.3e-07 59.3 95 37.9
Thhalv10016339m.g Eutrema salsugineum HOM05D000268 ORTHO05D000261 4.3e-07 59.3 91 39.6
Medtr6g044690 Medicago truncatula HOM05D000268 ORTHO05D000261 4.3e-07 59.3 85 40.0
PSO782G0266 Papaver somniferum HOM05D000268 ORTHO05D000261 4.3e-07 59.3 171 32.7
MD07G1058000 Malus domestica HOM05D000268 ORTHO05D000261 5.6e-07 58.9 92 38.0
EL10Ac9g22753 Beta vulgaris HOM05D000268 ORTHO05D000261 9.5e-07 58.2 95 37.9
FAN06G4309 Fragaria x ananassa HOM05D000268 ORTHO05D046218 9.5e-07 58.2 88 42.0
Glyma.01G202700 Glycine max HOM05D000268 ORTHO05D000261 9.5e-07 58.2 88 40.9
Gohir.D02G233150 Gossypium hirsutum HOM05D000268 ORTHO05D000261 9.5e-07 58.2 85 40.0
PSO675G7796 Papaver somniferum HOM05D000268 ORTHO05D000261 9.5e-07 58.2 175 29.7
SGA_v2.0_scaffold352G49682 Striga asiatica HOM05D000268 ORTHO05D000261 9.5e-07 58.2 86 45.3
Thecc.02G038800 Theobroma cacao HOM05D000268 ORTHO05D000261 9.5e-07 58.2 90 42.2
Medtr2g054460 Medicago truncatula HOM05D000268 ORTHO05D000261 1.2e-06 57.8 85 41.2
Sabra16G0031100 Salix brachista HOM05D000268 ORTHO05D000261 1.2e-06 57.8 168 28.0
AUR62017539 Chenopodium quinoa HOM05D000268 ORTHO05D000261 1.6e-06 57.4 91 39.6
Migut.J01562 Erythranthe guttata HOM05D000268 ORTHO05D000261 1.6e-06 57.4 87 40.2
RcHm_v2.0_Chr6g0292341 Rosa chinensis HOM05D000268 ORTHO05D000261 2.1e-06 57.0 94 40.4
TWI81G0005 Tripterygium wilfordii HOM05D000268 ORTHO05D000261 2.1e-06 57.0 133 33.1
PSO017G5324 Papaver somniferum HOM05D000268 ORTHO05D000261 2.8e-06 56.6 104 33.7
PSO782G4996 Papaver somniferum HOM05D000268 ORTHO05D000261 2.8e-06 56.6 174 29.3
Sp4g17400 Schrenkiella parvula HOM05D000268 ORTHO05D000261 2.8e-06 56.6 90 36.7
Zm00001eb178710 Zea mays HOM05D000268 ORTHO05D000261 2.8e-06 56.6 92 34.8
C05p16170 Brassica napus HOM05D000268 ORTHO05D000261 3.6e-06 56.2 83 42.2
CANSAT56G4415 Cannabis sativa HOM05D000268 ORTHO05D000261 3.6e-06 56.2 89 39.3
CARHR129320 Cardamine hirsuta HOM05D000268 ORTHO05D000261 3.6e-06 56.2 93 38.7
Ciclev10000524m.g Citrus clementina HOM05D000268 ORTHO05D000261 3.6e-06 56.2 173 28.3
Oeu021017.2 Olea europaea HOM05D000268 ORTHO05D000261 3.6e-06 56.2 88 44.3
Atru.chr1.1535 Acer truncatum HOM05D000268 ORTHO05D000261 4.7e-06 55.8 132 31.1
AL4G12270 Arabidopsis lyrata HOM05D000268 ORTHO05D000261 4.7e-06 55.8 96 36.5
CSS0026533 Camellia sinensis var. sinensis HOM05D000268 ORTHO05D000261 4.7e-06 55.8 89 40.4
CSS0036304 Camellia sinensis var. sinensis HOM05D000268 ORTHO05D000261 4.7e-06 55.8 89 40.4
COL.COLO4_37315 Corchorus olitorius HOM05D000268 ORTHO05D000261 4.7e-06 55.8 86 34.9
DCAR_003703 Daucus carota HOM05D000268 ORTHO05D000261 4.7e-06 55.8 166 28.9
Duzib132G1224 Durio zibethinus HOM05D000268 ORTHO05D000261 4.7e-06 55.8 90 40.0
Thhalv10012390m.g Eutrema salsugineum HOM05D000268 ORTHO05D000261 4.7e-06 55.8 79 44.3
Os12g0128450 Oryza sativa ssp. japonica HOM05D000268 ORTHO05D000261 4.7e-06 55.8 116 29.3
Thecc.03G146000 Theobroma cacao HOM05D000268 ORTHO05D000261 4.7e-06 55.8 82 35.4
Aqoxy1G01945 Aquilegia oxysepala HOM05D000268 ORTHO05D000261 6.2e-06 55.5 181 28.2
AL4G31180 Arabidopsis lyrata HOM05D000268 ORTHO05D000261 6.2e-06 55.5 92 38.0
BcaC02g08612 Brassica carinata HOM05D000268 ORTHO05D000261 6.2e-06 55.5 95 37.9
A04p17230 Brassica napus HOM05D000268 ORTHO05D000261 6.2e-06 55.5 95 37.9
C04p52050 Brassica napus HOM05D000268 ORTHO05D000261 6.2e-06 55.5 95 37.9
BolC4t26778H Brassica oleracea HOM05D000268 ORTHO05D000261 6.2e-06 55.5 95 37.9
BraA04t17351Z Brassica rapa HOM05D000268 ORTHO05D000261 6.2e-06 55.5 95 37.9
Migut.A00261 Erythranthe guttata HOM05D000268 ORTHO05D000261 6.2e-06 55.5 93 38.7
Os11g0131600 Oryza sativa ssp. japonica HOM05D000268 ORTHO05D000261 6.2e-06 55.5 116 28.4
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 6.2e-06 55.5 88 36.4
THA.LOC104807934 Tarenaya hassleriana HOM05D000268 ORTHO05D000261 6.2e-06 55.5 88 38.6
arahy.Tifrunner.gnm1.ann1.H7WJYE Arachis hypogaea HOM05D000268 ORTHO05D000261 8.1e-06 55.1 86 36.0
Carub.0004s0187 Capsella rubella HOM05D000268 ORTHO05D000261 8.1e-06 55.1 96 36.5
PGR119G1140 Punica granatum HOM05D000268 ORTHO05D000261 8.1e-06 55.1 89 39.3
Thecc.03G146300 Theobroma cacao HOM05D000268 ORTHO05D000261 8.1e-06 55.1 79 35.4
Zm00001eb042640 Zea mays HOM05D000268 ORTHO05D000261 8.1e-06 55.1 89 38.2


User provided reference genes

Program Settings