Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 6.7e-75 283.9 138 100.0
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 2.6e-63 245.4 138 88.4
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 4.5e-63 244.6 138 87.7
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 1.2e-52 209.9 99 100.0
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 1.8e-51 206.1 99 99.0
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 1.8e-51 206.1 99 99.0
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 1.1e-50 203.4 99 98.0
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 5.3e-48 194.5 123 79.7
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 5.0e-46 188.0 123 77.2
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 5.0e-46 188.0 123 77.2
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 1.1e-45 186.8 123 76.4
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 2.5e-45 185.7 123 75.6
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 9.4e-45 183.7 123 74.8
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 6.1e-44 181.0 87 100.0
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 1.8e-43 179.5 87 98.9
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 2.3e-43 179.1 123 74.8
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 2.6e-42 175.6 121 76.9
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 3.4e-42 175.3 121 74.4
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 5.7e-42 174.5 123 74.0
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 5.7e-42 174.5 123 74.0
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 5.7e-42 174.5 123 74.0
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 5.7e-42 174.5 123 74.0
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 5.7e-42 174.5 123 74.0
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 1.7e-41 172.9 123 73.2
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 4.8e-41 171.4 113 76.1
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 2.4e-40 169.1 121 72.7
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 6.5e-38 161.0 123 69.9
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 1.7e-33 146.4 114 65.8
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 8.6e-30 134.0 69 95.7
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 1.9e-29 132.9 115 55.7
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 4.2e-29 131.7 125 55.2
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 5.5e-29 131.3 120 61.7
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 5.5e-29 131.3 115 56.5
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 1.6e-28 129.8 125 52.8
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 4.7e-28 128.3 120 52.5
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 6.1e-28 127.9 125 55.2
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.0e-27 127.1 115 54.8
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.0e-27 127.1 115 53.9
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 1.4e-27 126.7 125 52.0
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 1.4e-27 126.7 115 55.7
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 3.0e-27 125.6 115 53.9
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 8.9e-27 124.0 111 54.1
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 1.5e-26 123.2 115 53.0
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 2.6e-26 122.5 115 51.3
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 4.4e-26 121.7 115 51.3
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 7.5e-26 120.9 113 51.3
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 7.5e-26 120.9 113 51.3
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 7.5e-26 120.9 115 51.3
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 1.3e-25 120.2 120 52.5
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 1.7e-25 119.8 115 50.4
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 1.7e-25 119.8 113 50.4
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.7e-25 119.8 114 50.0
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 2.9e-25 119.0 115 50.4
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 2.9e-25 119.0 115 50.4
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 3.7e-25 118.6 115 52.2
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 3.7e-25 118.6 120 47.5
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 4.9e-25 118.2 119 52.1
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 6.3e-25 117.9 120 50.8
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 8.3e-25 117.5 111 53.2
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 8.3e-25 117.5 115 50.4
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 8.3e-25 117.5 111 50.5
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 8.3e-25 117.5 114 48.2
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 8.3e-25 117.5 120 47.5
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.1e-24 117.1 115 50.4
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 1.1e-24 117.1 120 50.0
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 1.1e-24 117.1 115 48.7
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 1.4e-24 116.7 115 52.2
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.4e-24 116.7 111 50.5
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 2.4e-24 115.9 115 48.7
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 3.2e-24 115.5 111 51.4
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 4.1e-24 115.2 115 52.2
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 4.1e-24 115.2 112 48.2
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 1.6e-23 113.2 122 45.9
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 1.6e-23 113.2 111 45.9
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 2.0e-23 112.8 117 47.9
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 2.0e-23 112.8 118 50.0
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 2.7e-23 112.5 120 49.2
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 2.7e-23 112.5 114 45.6
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 2.7e-23 112.5 114 45.6
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 3.5e-23 112.1 125 48.8
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 5.9e-23 111.3 119 47.1
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 5.9e-23 111.3 120 48.3
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 7.8e-23 110.9 123 48.8
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 7.8e-23 110.9 123 48.8
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 1.3e-22 110.2 115 44.3
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 2.3e-22 109.4 115 47.8
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 2.9e-22 109.0 113 48.7
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 3.9e-22 108.6 115 44.3
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 3.9e-22 108.6 116 47.4
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 5.0e-22 108.2 116 48.3
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 6.6e-22 107.8 115 44.3
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 6.6e-22 107.8 132 42.4
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 8.6e-22 107.5 115 47.0
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.5e-21 106.7 113 48.7
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 2.5e-21 105.9 115 44.3
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 2.5e-21 105.9 115 46.1
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 2.5e-21 105.9 115 46.1
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 7.3e-21 104.4 90 54.4
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 7.3e-21 104.4 113 47.8
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 1.2e-20 103.6 126 43.7
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 2.1e-20 102.8 112 46.4
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 8.0e-20 100.9 92 51.1
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 1.8e-19 99.8 88 54.5
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 8.9e-19 97.4 94 47.9
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 1.2e-18 97.1 115 42.6
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 1.2e-18 97.1 115 42.6
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 1.2e-18 97.1 104 47.1
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 1.5e-18 96.7 185 33.5
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 4.4e-18 95.1 119 40.3
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 9.8e-18 94.0 120 38.3
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 9.8e-18 94.0 92 50.0
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 1.3e-17 93.6 119 37.8
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 3.7e-17 92.0 114 42.1
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 3.7e-17 92.0 114 42.1
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 4.9e-17 91.7 114 42.1
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 4.9e-17 91.7 115 43.5
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 4.1e-16 88.6 106 45.3
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 7.0e-16 87.8 81 51.9
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 2.0e-15 86.3 172 33.7
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 2.0e-15 86.3 104 43.3
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 1.3e-14 83.6 121 37.2
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.0e-14 82.4 116 37.1
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 6.6e-14 81.3 70 54.3
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 8.6e-14 80.9 44 88.6
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 1.5e-13 80.1 72 55.6
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 1.2e-10 70.5 74 47.3
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 1.5e-10 70.1 122 34.4
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 1.5e-10 70.1 75 45.3
AL1G44190 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 7.5e-10 67.8 117 43.6
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 9.8e-10 67.4 122 33.6
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.7e-09 65.5 118 32.2
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.7e-09 65.5 118 32.2
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.1e-08 63.9 96 37.5
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 1.1e-08 63.9 121 33.1
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 7.1e-08 61.2 65 47.7
C03p15400 Brassica napus HOM05D050392 ORTHO05D103667 2.3e-06 56.2 29 89.7


User provided reference genes

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