Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p36570 Brassica napus HOM05D005874 ORTHO05D007206 5.1e-63 244.2 119 100.0
BolC4t23058H Brassica oleracea HOM05D008292 ORTHO05D003352 4.9e-50 201.1 114 86.8
C04p14840 Brassica napus HOM05D005874 ORTHO05D007206 1.2e-43 179.9 102 88.2
BcaC02g11489 Brassica carinata HOM05D005874 ORTHO05D007206 1.5e-43 179.5 102 87.3
C05p62300 Brassica napus HOM05D005874 ORTHO05D007206 5.1e-23 111.3 63 85.7
BolC5t34886H Brassica oleracea HOM05D005874 ORTHO05D007206 5.1e-23 111.3 63 85.7
A05p42610 Brassica napus HOM05D005874 ORTHO05D007206 3.3e-22 108.6 63 81.0
BcaC05g29976 Brassica carinata HOM05D005874 ORTHO05D007206 5.7e-22 107.8 63 79.4
BraA05t22992Z Brassica rapa HOM05D005874 ORTHO05D007206 5.7e-22 107.8 63 81.0
Aa31LG5G15480 Aethionema arabicum HOM05D005874 ORTHO05D007206 4.8e-21 104.8 63 74.6
Thhalv10020879m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 3.4e-19 98.6 63 69.8
Aa31LG11G9040 Aethionema arabicum HOM05D005874 ORTHO05D007206 7.7e-19 97.4 62 67.7
Carub.0003s0419 Capsella rubella HOM05D005874 ORTHO05D007206 7.7e-19 97.4 58 70.7
BcaB04g19660 Brassica carinata HOM05D005874 ORTHO05D007206 1.7e-18 96.3 57 75.4
Sp2g20520 Schrenkiella parvula HOM05D005874 ORTHO05D007206 2.2e-18 95.9 57 75.4
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 5.0e-18 94.7 62 62.9
A09p05220 Brassica napus HOM05D005874 ORTHO05D007206 6.5e-18 94.4 57 73.7
BraA09t36161Z Brassica rapa HOM05D005874 ORTHO05D007206 6.5e-18 94.4 57 73.7
THA.LOC104802814 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 8.5e-18 94.0 63 63.5
THA.LOC104818669 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 8.5e-18 94.0 63 65.1
Thhalv10004370m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 1.4e-17 93.2 57 71.9
vmacro05048 Vaccinium macrocarpon HOM05D005874 ORTHO05D007206 1.4e-17 93.2 57 68.4
Prupe.6G333100 Prunus persica HOM05D005874 ORTHO05D007206 2.5e-17 92.4 57 70.2
GSVIVG01022009001 Vitis vinifera HOM05D005874 ORTHO05D007206 3.2e-17 92.0 58 67.2
BcaB04g19663 Brassica carinata HOM05D005874 ORTHO05D007206 4.2e-17 91.7 57 71.9
BcaC04g23685 Brassica carinata HOM05D005874 ORTHO05D007206 4.2e-17 91.7 57 71.9
C09p05680 Brassica napus HOM05D005874 ORTHO05D007206 4.2e-17 91.7 57 71.9
BolC9t53497H Brassica oleracea HOM05D005874 ORTHO05D007206 4.2e-17 91.7 57 71.9
COL.COLO4_13564 Corchorus olitorius HOM05D005874 ORTHO05D007206 5.5e-17 91.3 57 66.7
QL03p002925 Quercus lobata HOM05D005874 ORTHO05D007206 5.5e-17 91.3 57 70.2
Actinidia30901 Actinidia chinensis HOM05D005874 ORTHO05D007206 7.2e-17 90.9 58 69.0
FvH4_6g04920 Fragaria vesca HOM05D005874 ORTHO05D007206 7.2e-17 90.9 57 70.2
FAN14G1317 Fragaria x ananassa HOM05D005874 ORTHO05D007206 7.2e-17 90.9 57 70.2
Thecc.05G296800 Theobroma cacao HOM05D005874 ORTHO05D007206 7.2e-17 90.9 57 66.7
RcHm_v2.0_Chr3g0453421 Rosa chinensis HOM05D005874 ORTHO05D007206 9.4e-17 90.5 57 68.4
MELO3C014079.2 Cucumis melo HOM05D005874 ORTHO05D007206 1.2e-16 90.1 62 59.7
Duzib128G0205 Durio zibethinus HOM05D005874 ORTHO05D007206 1.2e-16 90.1 57 66.7
Actinidia05739 Actinidia chinensis HOM05D005874 ORTHO05D007206 1.6e-16 89.7 57 71.9
BcaC02g11488 Brassica carinata HOM05D008292 ORTHO05D003352 1.6e-16 89.7 46 93.5
BcaC04g23688 Brassica carinata HOM05D005874 ORTHO05D007206 1.6e-16 89.7 53 75.5
C04p14850 Brassica napus HOM05D008292 ORTHO05D003352 1.6e-16 89.7 46 93.5
CANSAT54G0668 Cannabis sativa HOM05D005874 ORTHO05D007206 1.6e-16 89.7 57 66.7
FAN05G2497 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.6e-16 89.7 57 68.4
FAN05G4189 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.6e-16 89.7 57 68.4
TAR362G0076 Trochodendron aralioides HOM05D005874 ORTHO05D007206 1.6e-16 89.7 58 67.2
CiPaw.07G012300 Carya illinoinensis HOM05D005874 ORTHO05D007206 2.1e-16 89.4 58 70.7
Manes.08G125000 Manihot esculenta HOM05D005874 ORTHO05D007206 2.1e-16 89.4 57 64.9
ATR0487G009 Amborella trichopoda HOM05D005874 ORTHO05D007206 2.7e-16 89.0 63 58.7
CsaV3_3G003940 Cucumis sativus L. HOM05D005874 ORTHO05D007206 2.7e-16 89.0 62 58.1
Gohir.D13G178100 Gossypium hirsutum HOM05D005874 ORTHO05D007206 3.6e-16 88.6 57 63.2
Gorai.013G203400 Gossypium raimondii HOM05D005874 ORTHO05D007206 3.6e-16 88.6 57 63.2
arahy.Tifrunner.gnm1.ann1.MWM6LR Arachis hypogaea HOM05D005874 ORTHO05D007206 6.1e-16 87.8 62 59.7
arahy.Tifrunner.gnm1.ann1.QVQE66 Arachis hypogaea HOM05D005874 ORTHO05D007206 6.1e-16 87.8 62 59.7
Dinv40230 Davidia involucrata HOM05D005874 ORTHO05D007206 7.9e-16 87.4 58 63.8
Eucgr.B02032 Eucalyptus grandis HOM05D005874 ORTHO05D007206 7.9e-16 87.4 58 62.1
Atru.chr2.537 Acer truncatum HOM05D005874 ORTHO05D007206 1.0e-15 87.0 57 64.9
Dinv22927 Davidia involucrata HOM05D005874 ORTHO05D007206 1.0e-15 87.0 57 63.2
PGR031G1977 Punica granatum HOM05D005874 ORTHO05D007206 1.0e-15 87.0 63 55.6
BcaC03g15888 Brassica carinata HOM05D008292 ORTHO05D003352 1.4e-15 86.7 46 91.3
Ciclev10001418m.g Citrus clementina HOM05D005874 ORTHO05D007206 1.4e-15 86.7 57 64.9
Cc02_g32810 Coffea canephora HOM05D005874 ORTHO05D007206 1.4e-15 86.7 58 63.8
FAN09G3845 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.8e-15 86.3 57 66.7
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 3.0e-15 85.5 57 61.4
MD12G1227400 Malus domestica HOM05D005874 ORTHO05D007206 3.0e-15 85.5 57 63.2
Glyma.19G239400 Glycine max HOM05D005874 ORTHO05D007206 3.9e-15 85.1 62 59.7
CARHR185900 Cardamine hirsuta HOM05D005874 ORTHO05D007206 6.7e-15 84.3 62 58.1
Hma1.2p1_0071F.1_g037960 Hydrangea macrophylla HOM05D005874 ORTHO05D007206 6.7e-15 84.3 56 62.5
Psat3g009240 Pisum sativum HOM05D005874 ORTHO05D007206 6.7e-15 84.3 62 58.1
Potri.005G041000 Populus trichocarpa HOM05D005874 ORTHO05D007206 6.7e-15 84.3 57 61.4
Sabra05G0040000 Salix brachista HOM05D005874 ORTHO05D007206 6.7e-15 84.3 57 63.2
Aqoxy5G00596 Aquilegia oxysepala HOM05D005874 ORTHO05D007206 8.8e-15 84.0 57 64.9
CSS0017417 Camellia sinensis var. sinensis HOM05D005874 ORTHO05D007206 8.8e-15 84.0 58 62.1
Glyma.03G242000 Glycine max HOM05D005874 ORTHO05D007206 8.8e-15 84.0 62 58.1
Cpa.g.sc84.114 Carica papaya HOM05D005874 ORTHO05D007206 1.5e-14 83.2 57 59.6
Lj9A680G39 Lonicera japonica HOM05D005874 ORTHO05D007206 1.5e-14 83.2 58 60.3
MD04G1213200 Malus domestica HOM05D005874 ORTHO05D007206 1.5e-14 83.2 57 59.6
Phvul.006G096000 Phaseolus vulgaris HOM05D005874 ORTHO05D007206 1.5e-14 83.2 57 61.4
TPR.G21789 Trifolium pratense HOM05D005874 ORTHO05D007206 1.5e-14 83.2 62 56.5
CAN.G56.14 Capsicum annuum HOM05D005874 ORTHO05D007206 2.0e-14 82.8 57 61.4
Gohir.A13G172200 Gossypium hirsutum HOM05D005874 ORTHO05D007206 2.0e-14 82.8 57 59.6
Lj9A677G37 Lonicera japonica HOM05D005874 ORTHO05D007206 2.0e-14 82.8 58 58.6
Lalb_Chr15g0077001 Lupinus albus HOM05D005874 ORTHO05D007206 2.5e-14 82.4 57 59.6
Sopen08g010120 Solanum pennellii HOM05D005874 ORTHO05D007206 3.3e-14 82.0 57 57.9
Peaxi162Scf00071g00714 Petunia axillaris HOM05D005874 ORTHO05D007206 4.3e-14 81.6 57 59.6
C05p31020 Brassica napus HOM05D008292 ORTHO05D003352 7.4e-14 80.9 48 81.2
PSO832G1738 Papaver somniferum HOM05D005874 ORTHO05D007206 7.4e-14 80.9 62 56.5
Solyc08g029200.3 Solanum lycopersicum HOM05D005874 ORTHO05D007206 7.4e-14 80.9 57 56.1
BolC5t31825H Brassica oleracea HOM05D008292 ORTHO05D003352 9.7e-14 80.5 48 79.2
Lj1g0003731 Lotus japonicus HOM05D005874 ORTHO05D007206 9.7e-14 80.5 57 61.4
TWI36G0483 Tripterygium wilfordii HOM05D005874 ORTHO05D007206 9.7e-14 80.5 62 51.6
MSTRG.10544 Avicennia marina HOM05D005874 ORTHO05D007206 1.3e-13 80.1 57 57.9
Medtr7g114080 Medicago truncatula HOM05D005874 ORTHO05D007206 1.7e-13 79.7 62 54.8
VMungo0540G0326 Vigna mungo HOM05D005874 ORTHO05D007206 1.7e-13 79.7 57 59.6
Rhsim07G0178000 Rhododendron simsii HOM05D005874 ORTHO05D007206 2.8e-13 79.0 67 52.2
SGA_v2.0_scaffold21G09411 Striga asiatica HOM05D005874 ORTHO05D007206 2.8e-13 79.0 62 53.2
CDE12G0821 Ceratophyllum demersum HOM05D005874 ORTHO05D007206 3.7e-13 78.6 58 56.9
ECA232G3849 Erigeron canadensis HOM05D005874 ORTHO05D007206 6.3e-13 77.8 57 54.4
PSO210G2121 Papaver somniferum HOM05D005874 ORTHO05D007206 6.3e-13 77.8 61 55.7
Migut.L01513 Erythranthe guttata HOM05D005874 ORTHO05D007206 1.8e-12 76.3 60 51.7
Os03g0363900 Oryza sativa ssp. japonica HOM05D005874 ORTHO05D007206 1.8e-12 76.3 55 58.2
Hund07023 Selenicereus undatus HOM05D005874 ORTHO05D007206 2.4e-12 75.9 57 54.4
Zm00001eb394310 Zea mays HOM05D005874 ORTHO05D007206 2.4e-12 75.9 57 56.1
Haze_04267 Corylus avellana HOM05D005874 ORTHO05D007206 3.1e-12 75.5 55 58.2
BcaB04g16904 Brassica carinata HOM05D008292 ORTHO05D003352 5.3e-12 74.7 46 78.3
Oeu052135.1 Olea europaea HOM05D005874 ORTHO05D007206 5.3e-12 74.7 57 59.6
HPP92_003153 Vanilla planifolia HOM05D005874 ORTHO05D007206 5.3e-12 74.7 58 48.3
A01p17040 Brassica napus HOM05D008292 ORTHO05D003352 2.0e-11 72.8 46 71.7
BraA09t39508Z Brassica rapa HOM05D008292 ORTHO05D003352 2.0e-11 72.8 46 71.7
HanXRQChr09g0254601 Helianthus annuus HOM05D005874 ORTHO05D007206 2.0e-11 72.8 57 52.6
unitig_578.g16415 Utricularia gibba HOM05D005874 ORTHO05D007206 2.6e-11 72.4 62 50.0
Sc06g0003460 Simmondsia chinensis HOM05D005874 ORTHO05D007206 4.5e-11 71.6 57 50.9
Lsat_1_v5_gn_4_139320 Lactuca sativa HOM05D005874 ORTHO05D007206 1.0e-10 70.5 57 52.6
Ah.04g159940 Amaranthus hybridus HOM05D005874 ORTHO05D007206 8.5e-10 67.4 57 50.9
Cfa006515 Carpinus fangiana HOM05D005874 ORTHO05D007206 3.2e-09 65.5 45 57.8
Mapoly0004s0142 Marchantia polymorpha HOM05D005874 ORTHO05D007206 7.2e-09 64.3 57 49.1
AagrBONN_evm.TU.Sc2ySwM_362.837 Anthoceros agrestis HOM05D005874 ORTHO05D007206 9.4e-09 63.9 58 43.1
BcaB01g00999 Brassica carinata HOM05D008292 ORTHO05D003352 1.2e-08 63.5 33 84.8
BcaC05g27196 Brassica carinata HOM05D008292 ORTHO05D003352 1.0e-07 60.5 35 77.1
C03p73890 Brassica napus HOM05D008292 ORTHO05D003352 5.1e-07 58.2 46 56.5
C09p33270 Brassica napus HOM05D008292 ORTHO05D003352 5.1e-07 58.2 33 75.8
BolC9t56163H Brassica oleracea HOM05D008292 ORTHO05D003352 5.1e-07 58.2 33 75.8
QL03p003516 Quercus lobata HOM05D005874 ORTHO05D007206 8.8e-07 57.4 134 29.9
CBR_g48996 Chara braunii HOM05D000019 ORTHO05D001702 2.0e-06 56.2 58 39.7


User provided reference genes

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