Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 2.1e-132 475.7 245 100.0
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 6.4e-129 464.2 243 98.4
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 2.8e-124 448.7 246 91.5
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 4.9e-113 411.4 249 82.3
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 1.8e-107 392.9 249 79.1
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 1.8e-107 392.9 249 79.1
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 1.8e-107 392.9 249 79.1
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 7.6e-106 387.5 249 78.7
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 1.7e-105 386.3 250 79.2
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.9e-104 382.9 253 79.1
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.3e-100 370.2 253 76.7
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 4.1e-99 365.2 253 74.7
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 2.2e-97 359.4 254 74.8
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.0e-94 350.5 252 73.4
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 1.5e-85 320.1 169 94.7
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 6.8e-62 241.5 268 54.9
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 2.8e-55 219.5 235 52.8
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.6e-47 193.7 264 44.7
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 1.0e-41 174.5 229 52.0
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 5.0e-41 172.2 228 50.0
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 5.0e-41 172.2 227 49.8
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 5.6e-40 168.7 269 45.0
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 2.1e-39 166.8 278 42.8
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.1e-38 162.9 220 50.0
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.1e-38 162.9 220 50.0
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 3.1e-38 162.9 220 50.0
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 5.2e-38 162.2 278 42.4
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 6.8e-38 161.8 228 49.1
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 2.0e-37 160.2 299 40.1
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.4e-37 159.5 258 43.8
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 3.4e-37 159.5 247 45.3
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 4.4e-37 159.1 279 41.2
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 5.8e-37 158.7 259 44.0
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 7.5e-37 158.3 260 44.2
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 4.9e-36 155.6 260 43.1
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 4.9e-36 155.6 226 47.8
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.9e-35 153.7 242 44.2
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 9.2e-35 151.4 275 40.0
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 1.2e-34 151.0 247 46.2
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 2.0e-34 150.2 246 43.9
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 2.7e-34 149.8 222 46.4
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 7.8e-34 148.3 218 46.3
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 2.3e-33 146.7 215 44.7
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 2.3e-33 146.7 241 41.9
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 3.0e-33 146.4 231 43.3
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 6.6e-33 145.2 220 45.9
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 1.9e-32 143.7 237 44.7
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.9e-32 143.7 247 43.7
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 2.5e-32 143.3 276 39.9
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 5.6e-32 142.1 259 39.8
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 9.5e-32 141.4 228 44.3
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 9.5e-32 141.4 290 39.3
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 2.1e-31 140.2 242 40.5
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 2.8e-31 139.8 239 42.7
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 2.8e-31 139.8 219 45.7
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 4.7e-31 139.0 270 38.9
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.8e-30 137.1 277 39.0
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 4.0e-30 136.0 240 42.1
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 5.2e-30 135.6 312 35.9
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 6.8e-30 135.2 229 41.0
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 6.8e-30 135.2 243 39.9
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 2.6e-29 133.3 236 42.8
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 2.6e-29 133.3 236 42.4
BcaC03g14956 Brassica carinata HOM05D004123 ORTHO05D004768 4.4e-29 132.5 64 98.4
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 5.8e-29 132.1 252 37.7
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 9.9e-29 131.3 248 42.7
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 1.3e-28 131.0 232 40.1
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 1.7e-28 130.6 237 40.9
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 2.2e-28 130.2 229 40.6
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 2.9e-28 129.8 201 46.3
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 3.7e-28 129.4 220 41.8
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 3.7e-28 129.4 274 37.2
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 4.9e-28 129.0 248 41.5
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 6.4e-28 128.6 193 43.0
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 8.3e-28 128.3 256 37.5
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.1e-27 127.9 219 42.9
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.1e-27 127.9 211 42.2
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.9e-27 127.1 214 41.1
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 2.4e-27 126.7 182 46.7
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 4.1e-27 125.9 274 36.9
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.6e-26 124.0 276 35.9
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 4.6e-26 122.5 224 40.2
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 6.0e-26 122.1 283 37.8
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 6.0e-26 122.1 252 39.3
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 1.3e-25 120.9 227 40.5
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 3.0e-25 119.8 219 41.6
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 3.0e-25 119.8 197 41.6
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 3.0e-25 119.8 248 39.1
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 5.1e-25 119.0 175 45.7
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 5.1e-25 119.0 231 39.0
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.1e-24 117.9 235 38.7
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 2.5e-24 116.7 232 39.7
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 3.3e-24 116.3 202 42.6
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 3.3e-24 116.3 284 34.2
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 3.3e-24 116.3 284 34.2
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 3.3e-24 116.3 93 65.6
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 4.3e-24 115.9 211 40.3
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 5.6e-24 115.5 198 41.9
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 7.3e-24 115.2 205 41.5
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 7.3e-24 115.2 219 41.1
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 9.5e-24 114.8 291 34.0
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 2.1e-23 113.6 242 37.6
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 2.8e-23 113.2 238 40.8
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 4.7e-23 112.5 249 41.0
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 6.2e-23 112.1 241 40.2
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 1.8e-22 110.5 178 43.3
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.4e-22 110.2 217 38.7
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.4e-22 110.2 215 41.4
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 3.1e-22 109.8 227 41.4
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 3.1e-22 109.8 229 38.0
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 3.1e-22 109.8 187 41.2
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 6.8e-22 108.6 204 41.2
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 6.8e-22 108.6 102 58.8
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 1.5e-21 107.5 244 38.1
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 2.0e-21 107.1 211 41.7
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 2.0e-21 107.1 211 41.7
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 4.4e-21 105.9 210 41.4
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 5.8e-21 105.5 223 36.8
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 9.9e-21 104.8 183 41.5
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 1.3e-20 104.4 208 38.5
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.7e-20 104.0 107 61.7
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 6.4e-20 102.1 240 38.8
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 9.2e-19 98.2 226 35.8
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 1.6e-18 97.4 84 61.9
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 3.5e-18 96.3 96 57.3
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 3.5e-18 96.3 96 57.3
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 6.0e-18 95.5 99 52.5
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 3.0e-17 93.2 52 86.5
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 8.7e-17 91.7 78 64.1
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 3.3e-16 89.7 207 37.7
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 1.4e-14 84.3 183 38.8
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 6.9e-14 82.0 229 34.5
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 5.8e-13 79.0 267 31.5
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 2.1e-10 70.5 230 34.8
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.3e-09 67.0 47 66.0
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.3e-09 67.0 47 66.0
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.1e-08 64.7 67 47.8
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 3.3e-08 63.2 81 44.4
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 7.3e-08 62.0 158 39.2
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 7.3e-08 62.0 187 29.4
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 7.3e-08 62.0 218 32.1
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.1e-07 60.5 218 33.9
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 2.8e-07 60.1 51 52.9
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 4.8e-07 59.3 45 57.8
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 1.4e-06 57.8 210 31.4
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 1.4e-06 57.8 126 34.9
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.8e-06 57.4 102 37.3
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 4.0e-06 56.2 207 30.4
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 5.3e-06 55.8 226 30.1
DCAR_024520 Daucus carota HOM05D001250 ORTHO05D000627 6.9e-06 55.5 153 28.8
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 6.9e-06 55.5 145 33.1
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 9.0e-06 55.1 134 32.1


User provided reference genes

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