Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 2.8e-85 318.5 156 100.0
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 4.6e-72 274.6 192 75.5
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 2.0e-11 73.2 52 69.2
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 7.7e-11 71.2 52 69.2
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 1.3e-10 70.5 84 48.8
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 3.8e-10 68.9 52 63.5
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 3.8e-10 68.9 52 63.5
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 3.8e-10 68.9 52 63.5
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 3.8e-10 68.9 52 63.5
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 3.8e-10 68.9 52 63.5
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 3.8e-10 68.9 52 63.5
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 3.2e-09 65.9 52 59.6
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 4.2e-09 65.5 52 57.7
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 4.2e-09 65.5 52 57.7
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 4.2e-09 65.5 52 57.7
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 5.5e-09 65.1 52 57.7
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 7.2e-09 64.7 114 37.7
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 1.2e-08 63.9 52 55.8
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 1.6e-08 63.5 52 55.8
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 2.1e-08 63.2 113 37.2
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 2.7e-08 62.8 52 55.8
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 2.7e-08 62.8 113 37.2
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 3.6e-08 62.4 41 73.2
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 6.1e-08 61.6 52 50.0
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.0e-07 60.8 52 53.8
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 1.0e-07 60.8 52 53.8
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 1.0e-07 60.8 52 53.8
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 1.4e-07 60.5 52 53.8
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 1.8e-07 60.1 113 35.4
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 1.8e-07 60.1 52 51.9
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 2.3e-07 59.7 84 40.5
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 2.3e-07 59.7 84 40.5
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 2.3e-07 59.7 84 40.5
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 2.3e-07 59.7 52 50.0
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 2.3e-07 59.7 52 51.9
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 2.3e-07 59.7 52 51.9
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 3.0e-07 59.3 52 50.0
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 3.0e-07 59.3 52 53.8
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 3.0e-07 59.3 52 51.9
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 3.0e-07 59.3 52 51.9
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 3.0e-07 59.3 52 51.9
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 3.0e-07 59.3 52 51.9
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 3.0e-07 59.3 52 51.9
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 3.0e-07 59.3 52 50.0
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 3.0e-07 59.3 52 50.0
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 3.0e-07 59.3 52 51.9
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 4.0e-07 58.9 84 39.3
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 4.0e-07 58.9 39 66.7
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 4.0e-07 58.9 52 51.9
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 4.0e-07 58.9 52 51.9
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 4.0e-07 58.9 52 51.9
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 4.0e-07 58.9 52 51.9
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 4.0e-07 58.9 84 40.5
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 4.0e-07 58.9 52 51.9
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 4.0e-07 58.9 52 50.0
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 4.0e-07 58.9 52 50.0
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 4.0e-07 58.9 39 69.2
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 4.0e-07 58.9 52 50.0
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 5.2e-07 58.5 59 55.9
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 5.2e-07 58.5 52 51.9
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 5.2e-07 58.5 39 66.7
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 5.2e-07 58.5 52 51.9
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 5.2e-07 58.5 52 50.0
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 5.2e-07 58.5 52 50.0
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 5.2e-07 58.5 52 50.0
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 5.2e-07 58.5 52 50.0
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 5.2e-07 58.5 52 50.0
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 5.2e-07 58.5 52 50.0
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 6.7e-07 58.2 59 55.9
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 6.7e-07 58.2 59 55.9
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 6.7e-07 58.2 59 55.9
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 6.7e-07 58.2 59 55.9
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 6.7e-07 58.2 59 55.9
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 6.7e-07 58.2 39 66.7
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 6.7e-07 58.2 52 50.0
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 6.7e-07 58.2 52 50.0
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 6.7e-07 58.2 52 50.0
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 6.7e-07 58.2 52 50.0
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 6.7e-07 58.2 52 50.0
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 6.7e-07 58.2 52 50.0
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 6.7e-07 58.2 52 50.0
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 6.7e-07 58.2 52 50.0
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 6.7e-07 58.2 52 50.0
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 6.7e-07 58.2 52 50.0
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 6.7e-07 58.2 52 50.0
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 8.8e-07 57.8 59 55.9
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 8.8e-07 57.8 52 50.0
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 8.8e-07 57.8 52 50.0
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 8.8e-07 57.8 52 50.0
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 8.8e-07 57.8 52 50.0
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 8.8e-07 57.8 52 50.0
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 8.8e-07 57.8 52 50.0
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 8.8e-07 57.8 52 50.0
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 8.8e-07 57.8 52 48.1
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 8.8e-07 57.8 52 48.1
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 8.8e-07 57.8 52 48.1
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 8.8e-07 57.8 52 50.0
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 8.8e-07 57.8 52 50.0
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 8.8e-07 57.8 39 64.1
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 8.8e-07 57.8 39 64.1
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 8.8e-07 57.8 52 50.0
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 8.8e-07 57.8 52 50.0
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.2e-06 57.4 52 50.0
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 1.2e-06 57.4 52 50.0
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 1.2e-06 57.4 52 50.0
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 1.2e-06 57.4 52 50.0
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 1.2e-06 57.4 52 50.0
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 1.2e-06 57.4 52 50.0
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 1.2e-06 57.4 52 50.0
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 1.2e-06 57.4 52 48.1
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 1.2e-06 57.4 52 50.0
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 1.2e-06 57.4 52 50.0
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 1.2e-06 57.4 39 66.7
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 1.2e-06 57.4 84 36.9
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 1.5e-06 57.0 39 64.1
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 1.5e-06 57.0 52 48.1
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 1.5e-06 57.0 52 48.1
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 2.0e-06 56.6 52 50.0
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 2.0e-06 56.6 52 48.1
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 2.0e-06 56.6 52 48.1
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 2.6e-06 56.2 59 54.2
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 2.6e-06 56.2 59 52.5
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 2.6e-06 56.2 52 48.1
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 2.6e-06 56.2 52 46.2
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 2.6e-06 56.2 39 64.1
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 2.6e-06 56.2 39 64.1
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 4.4e-06 55.5 52 46.2
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 4.4e-06 55.5 37 62.2
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 4.4e-06 55.5 39 61.5
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 9.7e-06 54.3 39 59.0
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 9.7e-06 54.3 39 59.0


User provided reference genes

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