Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p09760 Brassica napus HOM05D003172 ORTHO05D003708 3.3e-105 385.2 212 100.0
BolC2t06884H Brassica oleracea HOM05D003172 ORTHO05D003708 5.8e-86 321.2 174 100.0
BcaC03g13584 Brassica carinata HOM05D003172 ORTHO05D003708 1.9e-60 236.5 288 54.2
Sp6g26090 Schrenkiella parvula HOM05D003172 ORTHO05D003708 7.9e-59 231.1 303 51.2
CARHR194830 Cardamine hirsuta HOM05D003172 ORTHO05D003708 2.2e-56 223.0 300 50.0
A03p08720 Brassica napus HOM05D003172 ORTHO05D003708 8.2e-56 221.1 300 51.0
AL6G29440 Arabidopsis lyrata HOM05D003172 ORTHO05D003708 5.3e-55 218.4 300 49.0
BolC3t13502H Brassica oleracea HOM05D003172 ORTHO05D003708 3.4e-54 215.7 300 49.7
C03p10170 Brassica napus HOM05D003172 ORTHO05D003708 1.0e-53 214.2 300 49.3
BraA03t10195Z Brassica rapa HOM05D003172 ORTHO05D003708 1.0e-53 214.2 300 49.3
Carub.0006s1651 Capsella rubella HOM05D003172 ORTHO05D003708 5.5e-52 208.4 300 48.0
AT5G18230 Arabidopsis thaliana HOM05D003172 ORTHO05D003708 2.1e-51 206.5 300 47.7
A03p08740 Brassica napus HOM05D003172 ORTHO05D003708 7.9e-51 204.5 300 49.0
A02p04800 Brassica napus HOM05D003172 ORTHO05D003708 2.0e-49 199.9 166 70.5
Thhalv10012672m.g Eutrema salsugineum HOM05D003172 ORTHO05D003708 2.2e-48 196.4 300 47.3
BraA10t44192Z Brassica rapa HOM05D003172 ORTHO05D003708 6.5e-45 184.9 298 46.0
BcaC04g18714 Brassica carinata HOM05D003172 ORTHO05D003708 1.9e-44 183.3 302 46.0
C09p58750 Brassica napus HOM05D003172 ORTHO05D003708 1.9e-44 183.3 302 46.0
BcaNung04945 Brassica carinata HOM05D003172 ORTHO05D003708 7.2e-44 181.4 301 45.5
A10p21290 Brassica napus HOM05D003172 ORTHO05D003708 9.4e-44 181.0 300 45.7
BcaB08g36694 Brassica carinata HOM05D003172 ORTHO05D003708 2.1e-43 179.9 306 44.4
BolC9t58717H Brassica oleracea HOM05D003172 ORTHO05D003708 7.9e-43 177.9 302 44.7
BcaB01g05182 Brassica carinata HOM05D003172 ORTHO05D003708 1.4e-42 177.2 300 44.0
Aa31LG11G11360 Aethionema arabicum HOM05D003172 ORTHO05D003708 9.1e-39 164.5 300 42.0
BcaB05g23297 Brassica carinata HOM05D003172 ORTHO05D003708 2.7e-30 136.3 217 47.9
THA.LOC104802864 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 1.8e-15 87.0 300 32.3
Actinidia22095 Actinidia chinensis HOM05D003172 ORTHO05D003708 7.0e-15 85.1 241 34.9
THA.LOC104820736 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 1.2e-14 84.3 306 31.0
Haze_19406 Corylus avellana HOM05D003172 ORTHO05D003708 9.5e-12 74.7 316 29.7
CiPaw.09G000900 Carya illinoinensis HOM05D003172 ORTHO05D003708 8.0e-11 71.6 322 30.4
PGR142G1025 Punica granatum HOM05D003172 ORTHO05D003708 1.0e-10 71.2 318 28.3
Cfa016432 Carpinus fangiana HOM05D003172 ORTHO05D003708 5.2e-10 68.9 316 29.1
Dinv37006 Davidia involucrata HOM05D003172 ORTHO05D003708 1.5e-09 67.4 289 30.1
Thecc.05G292800 Theobroma cacao HOM05D003172 ORTHO05D003708 2.6e-09 66.6 317 28.4
Prupe.5G242100 Prunus persica HOM05D003172 ORTHO05D003708 7.5e-09 65.1 311 31.2
Sed0012949 Sechium edule HOM05D003172 ORTHO05D003708 2.2e-08 63.5 321 28.3
ClCG10G013300 Citrullus lanatus HOM05D003172 ORTHO05D003708 2.9e-08 63.2 321 28.0
QL07p020343 Quercus lobata HOM05D003172 ORTHO05D003708 2.9e-08 63.2 315 28.3
Lj2C357G5 Lonicera japonica HOM05D003172 ORTHO05D003708 3.7e-08 62.8 54 63.0
TAR369G0048 Trochodendron aralioides HOM05D003172 ORTHO05D003708 3.7e-08 62.8 318 29.2
Nitab4.5_0003153g0030 Nicotiana tabacum HOM05D003172 ORTHO05D003708 4.9e-08 62.4 51 64.7
CDE04G1193 Ceratophyllum demersum HOM05D003172 ORTHO05D003708 1.1e-07 61.2 44 70.5
CDE07G1719 Ceratophyllum demersum HOM05D003172 ORTHO05D003708 1.1e-07 61.2 44 70.5
Rhsim04G0086600 Rhododendron simsii HOM05D003172 ORTHO05D003708 1.8e-07 60.5 66 53.0
AL6G29450 Arabidopsis lyrata HOM05D003172 ORTHO05D003708 3.2e-07 59.7 66 51.5
Ca_08256_v3 Cicer arietinum L. HOM05D003172 ORTHO05D003708 3.2e-07 59.7 44 72.7
COL.COLO4_13621 Corchorus olitorius HOM05D003172 ORTHO05D003708 3.2e-07 59.7 48 66.7
DCAR_013693 Daucus carota HOM05D003172 ORTHO05D003708 3.2e-07 59.7 48 66.7
DCAR_016860 Daucus carota HOM05D003172 ORTHO05D003708 3.2e-07 59.7 48 66.7
Glyma.02G071300 Glycine max HOM05D003172 ORTHO05D003708 3.2e-07 59.7 44 72.7
Glyma.16G152500 Glycine max HOM05D003172 ORTHO05D003708 3.2e-07 59.7 44 72.7
Medtr7g085350 Medicago truncatula HOM05D003172 ORTHO05D003708 3.2e-07 59.7 44 72.7
Psat3g089480 Pisum sativum HOM05D003172 ORTHO05D003708 3.2e-07 59.7 44 72.7
TPR.G5918 Trifolium pratense HOM05D003172 ORTHO05D003708 3.2e-07 59.7 44 72.7
arahy.Tifrunner.gnm1.ann1.1H4ABR Arachis hypogaea HOM05D003172 ORTHO05D003708 4.1e-07 59.3 44 70.5
arahy.Tifrunner.gnm1.ann1.74GIZX Arachis hypogaea HOM05D003172 ORTHO05D003708 4.1e-07 59.3 44 70.5
arahy.Tifrunner.gnm1.ann1.TX5S28 Arachis hypogaea HOM05D003172 ORTHO05D003708 4.1e-07 59.3 44 70.5
arahy.Tifrunner.gnm1.ann1.WX09DK Arachis hypogaea HOM05D003172 ORTHO05D003708 4.1e-07 59.3 44 70.5
EL10Ac3g06798 Beta vulgaris HOM05D003172 ORTHO05D003708 4.1e-07 59.3 44 70.5
CAN.G662.2 Capsicum annuum HOM05D003172 ORTHO05D003708 4.1e-07 59.3 44 70.5
AUR62032669 Chenopodium quinoa HOM05D003172 ORTHO05D003708 4.1e-07 59.3 44 70.5
Duzib106G1828 Durio zibethinus HOM05D003172 ORTHO05D003708 4.1e-07 59.3 300 28.3
Lalb_Chr14g0364401 Lupinus albus HOM05D003172 ORTHO05D003708 4.1e-07 59.3 44 70.5
Os03g0652100 Oryza sativa ssp. japonica HOM05D003172 ORTHO05D003708 4.1e-07 59.3 48 64.6
SEGI_39352 Sequoiadendron giganteum HOM05D003172 ORTHO05D003708 4.1e-07 59.3 54 61.1
Solyc12g019860.2 Solanum lycopersicum HOM05D003172 ORTHO05D003708 4.1e-07 59.3 44 70.5
Sopen12g010260 Solanum pennellii HOM05D003172 ORTHO05D003708 4.1e-07 59.3 44 70.5
unitig_26.g9324 Utricularia gibba HOM05D003172 ORTHO05D003708 4.1e-07 59.3 44 70.5
unitig_736.g22311 Utricularia gibba HOM05D003172 ORTHO05D003708 4.1e-07 59.3 44 70.5
VMungo1383G1523 Vigna mungo HOM05D003172 ORTHO05D003708 4.1e-07 59.3 44 70.5
AagrBONN_evm.TU.Sc2ySwM_362.2336 Anthoceros agrestis HOM05D003172 ORTHO05D003708 5.4e-07 58.9 70 52.9
CsaV3_3G043330 Cucumis sativus L. HOM05D003172 ORTHO05D003708 5.4e-07 58.9 319 27.0
MBI11_g10542_MAGBIO Magnolia biondii HOM05D003172 ORTHO05D003708 5.4e-07 58.9 44 68.2
MD14G1244600 Malus domestica HOM05D003172 ORTHO05D003708 5.4e-07 58.9 44 70.5
vmacro09149 Vaccinium macrocarpon HOM05D003172 ORTHO05D003708 5.4e-07 58.9 66 53.0
HPP92_013954 Vanilla planifolia HOM05D003172 ORTHO05D003708 5.4e-07 58.9 44 68.2
CSS0035842 Camellia sinensis var. sinensis HOM05D003172 ORTHO05D003708 7.0e-07 58.5 66 51.5
MELO3C026894.2 Cucumis melo HOM05D003172 ORTHO05D003708 7.0e-07 58.5 66 51.5
Duzib177G0131 Durio zibethinus HOM05D003172 ORTHO05D003708 7.0e-07 58.5 66 51.5
Migut.K00002 Erythranthe guttata HOM05D003172 ORTHO05D003708 7.0e-07 58.5 66 50.0
Migut.N01517 Erythranthe guttata HOM05D003172 ORTHO05D003708 7.0e-07 58.5 66 50.0
Gohir.A11G257900 Gossypium hirsutum HOM05D003172 ORTHO05D003708 7.0e-07 58.5 66 51.5
Gohir.A13G105600 Gossypium hirsutum HOM05D003172 ORTHO05D003708 7.0e-07 58.5 66 51.5
Gohir.D11G267900 Gossypium hirsutum HOM05D003172 ORTHO05D003708 7.0e-07 58.5 66 51.5
Gorai.007G287600 Gossypium raimondii HOM05D003172 ORTHO05D003708 7.0e-07 58.5 66 51.5
Potri.019G032800 Populus trichocarpa HOM05D003172 ORTHO05D003708 7.0e-07 58.5 66 51.5
SGA_v2.0_scaffold94G28397 Striga asiatica HOM05D003172 ORTHO05D003708 7.0e-07 58.5 66 50.0
Zm00001eb052870 Zea mays HOM05D003172 ORTHO05D003708 7.0e-07 58.5 66 50.0
Zm00001eb218410 Zea mays HOM05D003172 ORTHO05D003708 7.0e-07 58.5 66 50.0
HanXRQChr09g0252941 Helianthus annuus HOM05D003172 ORTHO05D003708 9.2e-07 58.2 48 64.6
Nn7g35818 Nelumbo nucifera HOM05D003172 ORTHO05D003708 9.2e-07 58.2 66 50.0
Peaxi162Scf00076g00918 Petunia axillaris HOM05D003172 ORTHO05D003708 9.2e-07 58.2 308 25.3
CARHR217100 Cardamine hirsuta HOM05D003172 ORTHO05D003708 1.2e-06 57.8 44 70.5
ECA238G3293 Erigeron canadensis HOM05D003172 ORTHO05D003708 1.2e-06 57.8 66 50.0
Gohir.D13G109400 Gossypium hirsutum HOM05D003172 ORTHO05D003708 1.2e-06 57.8 298 28.2
Gorai.013G123000 Gossypium raimondii HOM05D003172 ORTHO05D003708 1.2e-06 57.8 298 28.2
HanXRQChr07g0193171 Helianthus annuus HOM05D003172 ORTHO05D003708 1.2e-06 57.8 66 50.0
HanXRQChr09g0266331 Helianthus annuus HOM05D003172 ORTHO05D003708 1.2e-06 57.8 66 50.0
HanXRQChr14g0438971 Helianthus annuus HOM05D003172 ORTHO05D003708 1.2e-06 57.8 73 49.3
Lsat_1_v5_gn_2_57861 Lactuca sativa HOM05D003172 ORTHO05D003708 1.2e-06 57.8 66 50.0
Lsat_1_v5_gn_6_36740 Lactuca sativa HOM05D003172 ORTHO05D003708 1.2e-06 57.8 66 50.0
Rhsim03G0000400 Rhododendron simsii HOM05D003172 ORTHO05D003708 1.2e-06 57.8 66 51.5
SGA_v2.0_scaffold274G46522 Striga asiatica HOM05D003172 ORTHO05D003708 1.2e-06 57.8 66 50.0
Eucgr.A02083 Eucalyptus grandis HOM05D003172 ORTHO05D003708 1.6e-06 57.4 44 70.5
MD06G1237800 Malus domestica HOM05D003172 ORTHO05D003708 1.6e-06 57.4 65 52.3
Ciclev10018788m.g Citrus clementina HOM05D003172 ORTHO05D003708 2.0e-06 57.0 312 28.5
Migut.K00001 Erythranthe guttata HOM05D003172 ORTHO05D003708 2.0e-06 57.0 66 48.5
Sc19g0006520 Simmondsia chinensis HOM05D003172 ORTHO05D003708 2.0e-06 57.0 66 50.0
Lj1g0020713 Lotus japonicus HOM05D003172 ORTHO05D003708 3.5e-06 56.2 44 65.9
Phvul.001G109300 Phaseolus vulgaris HOM05D003172 ORTHO05D003708 3.5e-06 56.2 319 26.3
Dinv14587 Davidia involucrata HOM05D003172 ORTHO05D003708 4.6e-06 55.8 319 27.6
FvH4_5g18220 Fragaria vesca HOM05D003172 ORTHO05D003708 4.6e-06 55.8 66 48.5
FAN04G3171 Fragaria x ananassa HOM05D003172 ORTHO05D003708 4.6e-06 55.8 66 48.5
FAN08G0762 Fragaria x ananassa HOM05D003172 ORTHO05D003708 4.6e-06 55.8 66 48.5
FAN13G1822 Fragaria x ananassa HOM05D003172 ORTHO05D003708 4.6e-06 55.8 66 48.5
FAN18G2753 Fragaria x ananassa HOM05D003172 ORTHO05D003708 4.6e-06 55.8 66 48.5
Glyma.16G042600 Glycine max HOM05D003172 ORTHO05D003708 4.6e-06 55.8 300 28.0
Mapoly0027s0010 Marchantia polymorpha HOM05D003172 ORTHO05D003708 4.6e-06 55.8 66 48.5
Potri.013G059800 Populus trichocarpa HOM05D003172 ORTHO05D003708 4.6e-06 55.8 320 26.2
RcHm_v2.0_Chr7g0177371 Rosa chinensis HOM05D003172 ORTHO05D003708 4.6e-06 55.8 66 48.5
GSVIVG01033382001 Vitis vinifera HOM05D003172 ORTHO05D003708 4.6e-06 55.8 323 28.5
Atru.chr2.1341 Acer truncatum HOM05D003172 ORTHO05D003708 5.9e-06 55.5 319 27.3
Pp3c24_19770 Physcomitrium patens HOM05D003172 ORTHO05D003708 5.9e-06 55.5 48 60.4
Pp3c8_22460 Physcomitrium patens HOM05D003172 ORTHO05D003708 5.9e-06 55.5 48 60.4
ECA233G5856 Erigeron canadensis HOM05D003172 ORTHO05D003708 7.8e-06 55.1 48 60.4
PSO384G1776 Papaver somniferum HOM05D003172 ORTHO05D003708 7.8e-06 55.1 44 63.6
TWI34G0902 Tripterygium wilfordii HOM05D003172 ORTHO05D003708 7.8e-06 55.1 83 47.0


User provided reference genes

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