Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 1.9e-119 433.0 290 100.0
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 5.1e-109 398.3 265 95.5
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 5.7e-108 394.8 265 94.7
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 6.3e-107 391.3 296 88.9
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 6.7e-101 371.3 295 87.8
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 3.8e-96 355.5 238 87.8
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 2.0e-89 333.2 271 79.7
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 3.4e-89 332.4 273 78.0
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 2.9e-88 329.3 242 81.8
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 3.8e-88 328.9 266 77.8
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 6.5e-88 328.2 266 77.4
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 6.5e-88 328.2 272 76.8
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 9.4e-87 324.3 265 74.0
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 2.1e-86 323.2 275 73.5
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 1.8e-85 320.1 273 76.6
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 3.3e-84 315.8 278 75.9
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 1.3e-83 313.9 273 76.6
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 1.1e-82 310.8 263 77.9
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 5.9e-81 305.1 233 77.3
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 9.8e-68 261.2 204 81.4
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 4.5e-57 225.7 247 57.9
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 7.8e-57 224.9 239 54.8
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 2.3e-56 223.4 128 87.5
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 2.9e-56 223.0 233 57.9
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 2.9e-56 223.0 241 64.3
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 1.5e-55 220.7 229 58.1
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 2.5e-55 219.9 237 56.5
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 3.3e-55 219.5 239 56.1
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 5.6e-55 218.8 245 55.5
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 5.6e-55 218.8 218 58.3
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 9.5e-55 218.0 237 54.9
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 2.1e-54 216.9 230 58.7
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 4.7e-54 215.7 231 58.0
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 1.0e-53 214.5 243 58.8
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 1.4e-53 214.2 241 51.0
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 1.8e-53 213.8 208 64.4
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 6.8e-53 211.8 228 58.3
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 8.9e-53 211.5 241 58.1
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 1.2e-52 211.1 232 56.5
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 2.6e-52 209.9 241 55.2
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 1.3e-51 207.6 220 56.8
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 1.3e-51 207.6 237 61.2
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.7e-51 207.2 227 55.1
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 2.2e-51 206.8 228 54.8
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 3.7e-51 206.1 234 53.8
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 3.7e-51 206.1 241 53.9
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 3.7e-51 206.1 237 49.8
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 4.9e-51 205.7 226 59.3
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 4.9e-51 205.7 215 56.7
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 6.4e-51 205.3 235 50.6
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 6.4e-51 205.3 227 49.8
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 8.3e-51 204.9 214 56.5
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 8.3e-51 204.9 243 49.0
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 1.8e-50 203.8 227 60.8
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 2.4e-50 203.4 227 60.8
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 5.4e-50 202.2 238 58.4
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 9.2e-50 201.4 205 54.6
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 1.2e-49 201.1 227 61.7
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 1.6e-49 200.7 217 57.1
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.6e-49 200.7 242 47.9
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 2.0e-49 200.3 226 55.8
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 2.0e-49 200.3 238 58.0
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 3.5e-49 199.5 240 60.0
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 3.5e-49 199.5 212 54.2
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 4.6e-49 199.1 258 53.1
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 5.9e-49 198.7 222 47.7
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 5.9e-49 198.7 256 55.5
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 1.0e-48 198.0 226 52.7
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 1.0e-48 198.0 247 56.3
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 1.0e-48 198.0 208 61.1
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 1.3e-48 197.6 248 58.9
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 1.3e-48 197.6 236 58.5
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 1.7e-48 197.2 216 53.2
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 3.0e-48 196.4 224 58.0
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 3.0e-48 196.4 227 59.5
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 3.0e-48 196.4 216 52.8
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 3.9e-48 196.1 219 55.3
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 5.0e-48 195.7 232 49.1
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 5.0e-48 195.7 222 61.7
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.1e-47 194.5 230 51.7
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 1.1e-47 194.5 242 54.5
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 1.9e-47 193.7 219 61.2
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 1.9e-47 193.7 234 56.0
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 3.3e-47 193.0 208 59.1
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 3.3e-47 193.0 208 56.7
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 7.3e-47 191.8 206 58.7
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 1.6e-46 190.7 220 53.6
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 1.6e-46 190.7 225 52.4
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 2.1e-46 190.3 222 54.5
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 2.1e-46 190.3 219 47.9
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 2.8e-46 189.9 233 53.2
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 8.0e-46 188.3 245 55.9
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 8.0e-46 188.3 225 52.0
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 1.4e-45 187.6 220 51.8
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 1.4e-45 187.6 230 56.1
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 3.1e-45 186.4 253 51.8
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 4.0e-45 186.0 209 56.5
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 4.0e-45 186.0 220 56.4
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 1.7e-43 180.6 258 53.9
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 9.2e-42 174.9 230 46.5
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 2.7e-41 173.3 112 71.4
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 2.3e-40 170.2 217 44.7
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 6.6e-40 168.7 228 43.4
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 2.5e-39 166.8 201 43.8
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 3.3e-39 166.4 219 45.7
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 5.6e-39 165.6 227 46.7
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 2.1e-38 163.7 118 64.4
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 3.1e-37 159.8 144 59.0
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 4.0e-37 159.5 121 62.8
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 1.5e-36 157.5 189 48.1
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 2.6e-36 156.8 116 62.1
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 2.6e-36 156.8 106 67.9
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 5.8e-36 155.6 121 62.8
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 5.8e-36 155.6 217 47.9
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 9.8e-36 154.8 121 62.0
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 1.3e-35 154.5 111 64.0
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 2.2e-35 153.7 101 68.3
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 4.9e-35 152.5 113 64.6
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 4.9e-35 152.5 173 59.0
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 7.1e-34 148.7 127 59.8
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 7.1e-34 148.7 197 55.8
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 2.1e-33 147.1 111 61.3
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 3.5e-33 146.4 151 53.0
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.3e-32 144.4 107 60.7
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 6.6e-32 142.1 141 55.3
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 1.1e-31 141.4 102 62.7
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 3.3e-31 139.8 124 55.6
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 5.6e-31 139.0 102 61.8
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 2.8e-30 136.7 102 59.8
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 3.6e-30 136.3 102 59.8
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 3.6e-30 136.3 102 59.8
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 4.7e-30 136.0 120 55.0
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 3.4e-28 129.8 91 64.8
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 1.7e-27 127.5 98 59.2
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 4.9e-27 125.9 218 45.4
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 1.1e-26 124.8 85 64.7
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 1.9e-26 124.0 140 47.1
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 3.2e-26 123.2 243 38.7
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 5.4e-26 122.5 257 44.0
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 1.2e-25 121.3 86 61.6
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 1.6e-25 120.9 108 53.7
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 6.0e-25 119.0 86 61.6
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 6.0e-25 119.0 91 58.2
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 4.7e-22 109.4 86 58.1
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 3.1e-21 106.7 133 46.6
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 6.9e-21 105.5 122 41.8
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 1.2e-20 104.8 236 40.3
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 4.4e-20 102.8 236 41.1
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 4.9e-19 99.4 79 62.0
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 7.8e-17 92.0 219 32.9
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 6.9e-13 79.0 112 42.0
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 2.1e-09 67.4 280 26.8
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 3.7e-06 56.6 79 38.0


User provided reference genes

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