Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p48190 Brassica napus HOM05D003870 ORTHO05D004567 4.9e-52 207.6 112 100.0
BolC1t04783H Brassica oleracea HOM05D003870 ORTHO05D004567 3.9e-49 198.0 113 97.3
BraA01t03856Z Brassica rapa HOM05D003870 ORTHO05D004567 2.9e-44 181.8 146 75.3
A01p37960 Brassica napus HOM05D003870 ORTHO05D004567 1.9e-43 179.1 146 74.7
BcaC05g28907 Brassica carinata HOM05D003870 ORTHO05D004567 1.2e-42 176.4 146 72.6
C05p50360 Brassica napus HOM05D003870 ORTHO05D004567 1.2e-42 176.4 146 72.6
BolC5t33784H Brassica oleracea HOM05D003870 ORTHO05D004567 1.2e-42 176.4 146 72.6
Thhalv10021715m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 1.2e-42 176.4 146 72.6
Sp3g14500 Schrenkiella parvula HOM05D003870 ORTHO05D004567 1.2e-42 176.4 146 73.3
BcaB04g18888 Brassica carinata HOM05D003870 ORTHO05D004567 2.7e-42 175.3 146 71.9
A05p33360 Brassica napus HOM05D003870 ORTHO05D004567 1.0e-41 173.3 146 71.9
BraA05t22161Z Brassica rapa HOM05D003870 ORTHO05D004567 1.0e-41 173.3 146 71.9
BcaB06g25707 Brassica carinata HOM05D003870 ORTHO05D004567 1.1e-40 169.9 146 70.5
AL3G28820 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 2.5e-40 168.7 146 69.2
Carub.0003s1588 Capsella rubella HOM05D003870 ORTHO05D004567 5.7e-40 167.5 146 69.2
AT3G16140 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 1.7e-39 166.0 146 68.5
CARHR042360 Cardamine hirsuta HOM05D003870 ORTHO05D004567 2.2e-39 165.6 146 69.2
BraA08t32272Z Brassica rapa HOM05D003870 ORTHO05D004567 2.8e-39 165.2 146 68.5
C06p07460 Brassica napus HOM05D003870 ORTHO05D004567 6.3e-39 164.1 146 67.8
BolC6t35835H Brassica oleracea HOM05D003870 ORTHO05D004567 6.3e-39 164.1 146 67.8
Carub.0001s4120 Capsella rubella HOM05D003870 ORTHO05D004567 6.3e-39 164.1 146 67.8
Aa31LG10G2680 Aethionema arabicum HOM05D003870 ORTHO05D004567 8.2e-39 163.7 146 67.8
BcaC01g01311 Brassica carinata HOM05D003870 ORTHO05D004567 8.2e-39 163.7 146 67.8
BcaC01g01313 Brassica carinata HOM05D003870 ORTHO05D004567 8.2e-39 163.7 146 67.8
A08p02270 Brassica napus HOM05D003870 ORTHO05D004567 1.1e-38 163.3 146 67.8
CARHR091300 Cardamine hirsuta HOM05D003870 ORTHO05D004567 1.1e-38 163.3 146 67.1
Thhalv10011814m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 1.1e-38 163.3 146 67.8
C03p90500 Brassica napus HOM05D003870 ORTHO05D004567 1.4e-38 162.9 146 67.8
BolC3t21374H Brassica oleracea HOM05D003870 ORTHO05D004567 1.4e-38 162.9 146 67.8
A06p01960 Brassica napus HOM05D003870 ORTHO05D004567 4.1e-38 161.4 146 67.1
BraA06t23412Z Brassica rapa HOM05D003870 ORTHO05D004567 4.1e-38 161.4 146 67.1
Sp1g38770 Schrenkiella parvula HOM05D003870 ORTHO05D004567 6.9e-38 160.6 146 66.4
AT1G52230 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 1.2e-37 159.8 146 67.1
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 3.8e-36 154.8 144 66.0
THA.LOC104817982 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 2.7e-34 148.7 146 63.0
VMungo0331G0764 Vigna mungo HOM05D003870 ORTHO05D004567 2.3e-33 145.6 145 60.7
Cpa.g.sc1182.1 Carica papaya HOM05D003870 ORTHO05D004567 3.9e-33 144.8 145 60.7
TWI12G1021 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 5.1e-33 144.4 145 60.0
PGR102G1204 Punica granatum HOM05D003870 ORTHO05D004567 6.7e-33 144.1 145 58.6
Manes.04G129900 Manihot esculenta HOM05D003870 ORTHO05D004567 8.8e-33 143.7 145 58.6
Glyma.08G204800 Glycine max HOM05D003870 ORTHO05D004567 1.1e-32 143.3 145 59.3
THA.LOC104810527 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 1.1e-32 143.3 147 61.9
Glyma.07G019700 Glycine max HOM05D003870 ORTHO05D004567 1.5e-32 142.9 145 59.3
Phvul.010G148800 Phaseolus vulgaris HOM05D003870 ORTHO05D004567 2.0e-32 142.5 145 59.3
Potri.003G052500 Populus trichocarpa HOM05D003870 ORTHO05D004567 3.3e-32 141.7 145 59.3
Lsat_1_v5_gn_5_130901 Lactuca sativa HOM05D003870 ORTHO05D004567 4.4e-32 141.4 142 59.9
Sabra03G0026800 Salix brachista HOM05D003870 ORTHO05D004567 4.4e-32 141.4 145 59.3
Manes.11G038100 Manihot esculenta HOM05D003870 ORTHO05D004567 5.7e-32 141.0 145 57.9
Migut.I00942 Erythranthe guttata HOM05D003870 ORTHO05D004567 7.4e-32 140.6 145 59.3
arahy.Tifrunner.gnm1.ann1.71HCYD Arachis hypogaea HOM05D003870 ORTHO05D004567 2.2e-31 139.0 145 58.6
arahy.Tifrunner.gnm1.ann1.YBSA05 Arachis hypogaea HOM05D003870 ORTHO05D004567 2.2e-31 139.0 145 58.6
Ciclev10026722m.g Citrus clementina HOM05D003870 ORTHO05D004567 2.2e-31 139.0 145 57.2
MELO3C012971.2 Cucumis melo HOM05D003870 ORTHO05D004567 2.2e-31 139.0 145 57.2
Glyma.15G016300 Glycine max HOM05D003870 ORTHO05D004567 2.8e-31 138.7 142 57.7
ECA234G4669 Erigeron canadensis HOM05D003870 ORTHO05D004567 3.7e-31 138.3 142 58.5
DCAR_023061 Daucus carota HOM05D003870 ORTHO05D004567 4.8e-31 137.9 145 58.6
AUR62011659 Chenopodium quinoa HOM05D003870 ORTHO05D004567 6.3e-31 137.5 145 58.6
CANSAT56G1465 Cannabis sativa HOM05D003870 ORTHO05D004567 8.2e-31 137.1 145 57.2
Hma1.2p1_1195F.1_g265780 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 8.2e-31 137.1 146 57.5
Hma1.2p1_3147F.1_g333153 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 8.2e-31 137.1 146 57.5
Ah.01g021620 Amaranthus hybridus HOM05D003870 ORTHO05D004567 1.1e-30 136.7 145 57.9
Cc04_g03050 Coffea canephora HOM05D003870 ORTHO05D004567 1.1e-30 136.7 145 57.9
CsaV3_3G025000 Cucumis sativus L. HOM05D003870 ORTHO05D004567 1.1e-30 136.7 145 56.6
Migut.D01017 Erythranthe guttata HOM05D003870 ORTHO05D004567 1.1e-30 136.7 145 57.2
Eucgr.F03038 Eucalyptus grandis HOM05D003870 ORTHO05D004567 1.1e-30 136.7 144 56.9
ClCG07G013150 Citrullus lanatus HOM05D003870 ORTHO05D004567 1.4e-30 136.3 145 56.6
Psat5g298080 Pisum sativum HOM05D003870 ORTHO05D004567 1.4e-30 136.3 147 55.8
PGSC0003DMG400007571 Solanum tuberosum HOM05D003870 ORTHO05D004567 1.4e-30 136.3 144 58.3
Nitab4.5_0000351g0060 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.8e-30 136.0 146 55.5
HanXRQChr12g0360771 Helianthus annuus HOM05D003870 ORTHO05D004567 2.4e-30 135.6 142 57.7
Sed0005638 Sechium edule HOM05D003870 ORTHO05D004567 2.4e-30 135.6 145 55.9
EL10Ac9g22029 Beta vulgaris HOM05D003870 ORTHO05D004567 3.1e-30 135.2 145 57.2
Nn2g11696 Nelumbo nucifera HOM05D003870 ORTHO05D004567 3.1e-30 135.2 145 56.6
TWI75G1362 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 4.1e-30 134.8 146 58.2
MD09G1209500 Malus domestica HOM05D003870 ORTHO05D004567 5.3e-30 134.4 145 55.9
Nitab4.5_0018837g0020 Nicotiana tabacum HOM05D003870 ORTHO05D004567 5.3e-30 134.4 146 54.8
Prupe.3G067400 Prunus persica HOM05D003870 ORTHO05D004567 5.3e-30 134.4 145 54.5
RcHm_v2.0_Chr2g0138931 Rosa chinensis HOM05D003870 ORTHO05D004567 5.3e-30 134.4 145 55.9
Solyc06g066640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 5.3e-30 134.4 146 54.8
Solyc12g044280.2 Solanum lycopersicum HOM05D003870 ORTHO05D004567 5.3e-30 134.4 143 56.6
Sopen12g022520 Solanum pennellii HOM05D003870 ORTHO05D004567 5.3e-30 134.4 143 56.6
TAR383G0495 Trochodendron aralioides HOM05D003870 ORTHO05D004567 5.3e-30 134.4 145 57.9
Cfa002093 Carpinus fangiana HOM05D003870 ORTHO05D004567 6.9e-30 134.0 145 55.9
Haze_16364 Corylus avellana HOM05D003870 ORTHO05D004567 6.9e-30 134.0 145 55.9
Lj3g0012525 Lotus japonicus HOM05D003870 ORTHO05D004567 6.9e-30 134.0 149 57.7
Lalb_Chr14g0373231 Lupinus albus HOM05D003870 ORTHO05D004567 6.9e-30 134.0 145 57.9
Sopen06g024910 Solanum pennellii HOM05D003870 ORTHO05D004567 6.9e-30 134.0 146 54.8
CSS0035581 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 9.1e-30 133.7 145 57.2
CAN.G1152.5 Capsicum annuum HOM05D003870 ORTHO05D004567 9.1e-30 133.7 146 54.1
FAN05G2130 Fragaria x ananassa HOM05D003870 ORTHO05D004567 9.1e-30 133.7 145 55.2
Dinv38024 Davidia involucrata HOM05D003870 ORTHO05D004567 1.2e-29 133.3 145 55.9
FAN14G2389 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.2e-29 133.3 145 55.2
QL05p021780 Quercus lobata HOM05D003870 ORTHO05D004567 1.2e-29 133.3 144 56.2
Sed0024359 Sechium edule HOM05D003870 ORTHO05D004567 1.2e-29 133.3 145 55.9
COL.COLO4_30434 Corchorus olitorius HOM05D003870 ORTHO05D004567 1.5e-29 132.9 145 57.2
Nn3g18073 Nelumbo nucifera HOM05D003870 ORTHO05D004567 1.5e-29 132.9 146 57.5
SGA_v2.0_scaffold5G02558 Striga asiatica HOM05D003870 ORTHO05D004567 1.5e-29 132.9 145 56.6
FAN02G0928 Fragaria x ananassa HOM05D003870 ORTHO05D004567 2.0e-29 132.5 145 55.2
Nitab4.5_0002859g0140 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.0e-29 132.5 146 54.8
Thecc.06G092200 Theobroma cacao HOM05D003870 ORTHO05D004567 2.0e-29 132.5 145 55.9
Lsat_1_v5_gn_1_35241 Lactuca sativa HOM05D003870 ORTHO05D004567 2.6e-29 132.1 147 57.1
Nitab4.5_0001315g0130 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.6e-29 132.1 146 54.1
TAR626G1423 Trochodendron aralioides HOM05D003870 ORTHO05D004567 2.6e-29 132.1 145 56.6
Aqoxy7G01609 Aquilegia oxysepala HOM05D003870 ORTHO05D004567 3.4e-29 131.7 145 55.2
CiPaw.01G235900 Carya illinoinensis HOM05D003870 ORTHO05D004567 3.4e-29 131.7 145 56.6
PGSC0003DMG400016504 Solanum tuberosum HOM05D003870 ORTHO05D004567 4.5e-29 131.3 146 53.4
Eucgr.J02958 Eucalyptus grandis HOM05D003870 ORTHO05D004567 5.9e-29 131.0 146 56.2
MSTRG.11054 Avicennia marina HOM05D003870 ORTHO05D004567 1.0e-28 130.2 145 55.2
FvH4_6g31740 Fragaria vesca HOM05D003870 ORTHO05D004567 1.0e-28 130.2 145 54.5
Nitab4.5_0003418g0030 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.0e-28 130.2 146 54.1
TAR636G2531 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.0e-28 130.2 145 55.2
FAN09G1730 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.3e-28 129.8 145 53.8
Oeu029644.1 Olea europaea HOM05D003870 ORTHO05D004567 1.3e-28 129.8 145 55.9
Duzib235G0817 Durio zibethinus HOM05D003870 ORTHO05D004567 1.7e-28 129.4 145 55.2
Medtr2g101820 Medicago truncatula HOM05D003870 ORTHO05D004567 1.7e-28 129.4 148 54.7
Peaxi162Scf00015g00032 Petunia axillaris HOM05D003870 ORTHO05D004567 2.2e-28 129.0 146 52.7
VMungo1080G1700 Vigna mungo HOM05D003870 ORTHO05D004567 2.9e-28 128.6 138 57.2
Glyma.13G357300 Glycine max HOM05D003870 ORTHO05D004567 5.0e-28 127.9 134 57.5
PGSC0003DMG400002626 Solanum tuberosum HOM05D003870 ORTHO05D004567 5.0e-28 127.9 146 53.4
CSS0004601 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 6.5e-28 127.5 145 53.8
CSS0022866 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 6.5e-28 127.5 145 53.8
CiPaw.02G148900 Carya illinoinensis HOM05D003870 ORTHO05D004567 6.5e-28 127.5 145 55.2
Gohir.A05G131700 Gossypium hirsutum HOM05D003870 ORTHO05D004567 6.5e-28 127.5 145 55.2
Lalb_Chr25g0279971 Lupinus albus HOM05D003870 ORTHO05D004567 6.5e-28 127.5 146 55.5
PSO782G2129 Papaver somniferum HOM05D003870 ORTHO05D004567 8.5e-28 127.1 146 53.4
PSO832G3918 Papaver somniferum HOM05D003870 ORTHO05D004567 1.1e-27 126.7 146 52.7
Actinidia21679 Actinidia chinensis HOM05D003870 ORTHO05D004567 1.4e-27 126.3 145 53.8
Gohir.D05G131200 Gossypium hirsutum HOM05D003870 ORTHO05D004567 1.4e-27 126.3 145 55.2
Gorai.009G134900 Gossypium raimondii HOM05D003870 ORTHO05D004567 1.4e-27 126.3 145 55.2
Peaxi162Scf00034g00513 Petunia axillaris HOM05D003870 ORTHO05D004567 1.4e-27 126.3 143 53.8
CAN.G438.27 Capsicum annuum HOM05D003870 ORTHO05D004567 1.9e-27 125.9 146 52.7
MBI01_g07179_MAGBIO Magnolia biondii HOM05D003870 ORTHO05D004567 1.9e-27 125.9 145 53.8
Duzib160G0587 Durio zibethinus HOM05D003870 ORTHO05D004567 2.5e-27 125.6 145 54.5
GSVIVG01017071001 Vitis vinifera HOM05D003870 ORTHO05D004567 2.5e-27 125.6 145 53.1
Solyc03g120640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 4.2e-27 124.8 146 52.7
AL1G60400 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 9.4e-27 123.6 117 63.2
BcaC08g43379 Brassica carinata HOM05D003870 ORTHO05D004567 1.2e-26 123.2 102 68.6
unitig_0.g2124 Utricularia gibba HOM05D003870 ORTHO05D004567 1.2e-26 123.2 145 53.8
Hund00643 Selenicereus undatus HOM05D003870 ORTHO05D004567 3.6e-26 121.7 147 53.1
SGA_v2.0_scaffold69G23361 Striga asiatica HOM05D003870 ORTHO05D004567 3.6e-26 121.7 146 53.4
Oeu024071.1 Olea europaea HOM05D003870 ORTHO05D004567 1.0e-25 120.2 126 55.6
CDE02G4568 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 1.1e-24 116.7 146 49.3
Rhsim08G0223300 Rhododendron simsii HOM05D003870 ORTHO05D004567 2.0e-24 115.9 146 52.7
Zm00001eb295610 Zea mays HOM05D003870 ORTHO05D004567 2.0e-24 115.9 146 54.8
vmacro18888 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 2.6e-24 115.5 146 52.1
Nitab4.5_0001968g0090 Nicotiana tabacum HOM05D003870 ORTHO05D004567 3.3e-24 115.2 134 52.2
Rhsim12G0200100 Rhododendron simsii HOM05D003870 ORTHO05D004567 1.3e-23 113.2 145 51.0
ATR0315G019 Amborella trichopoda HOM05D003870 ORTHO05D004567 1.7e-23 112.8 145 50.3
CDE04G3706 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 1.7e-23 112.8 146 48.6
AUR62016482 Chenopodium quinoa HOM05D003870 ORTHO05D004567 2.2e-23 112.5 142 52.8
vmacro16969 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 3.7e-23 111.7 145 49.7
Sc15g0001350 Simmondsia chinensis HOM05D003870 ORTHO05D004567 4.8e-23 111.3 144 52.8
Actinidia32731 Actinidia chinensis HOM05D003870 ORTHO05D004567 6.3e-23 110.9 135 49.6
Sopen00g011820 Solanum pennellii HOM05D003870 ORTHO05D004567 5.3e-22 107.8 103 57.3
Os05g0560000 Oryza sativa ssp. japonica HOM05D003870 ORTHO05D004567 9.1e-22 107.1 143 49.0
Peaxi162Scf00207g00951 Petunia axillaris HOM05D003870 ORTHO05D004567 9.1e-22 107.1 119 53.8
SEGI_14279 Sequoiadendron giganteum HOM05D003870 ORTHO05D004567 3.5e-21 105.1 143 46.9
MD17G1191400 Malus domestica HOM05D003870 ORTHO05D004567 7.2e-19 97.4 60 76.7
TPR.G37200 Trifolium pratense HOM05D003870 ORTHO05D004567 1.6e-18 96.3 147 48.3
Pp3c15_19390 Physcomitrium patens HOM05D003870 ORTHO05D004567 2.6e-16 89.0 137 41.6
Pp3c9_19520 Physcomitrium patens HOM05D003870 ORTHO05D004567 1.3e-15 86.7 137 42.3
CBR_g31512 Chara braunii HOM05D003870 ORTHO05D004567 1.4e-14 83.2 142 41.5
HPP92_021482 Vanilla planifolia HOM05D003870 ORTHO05D004567 2.0e-13 79.3 137 46.7
Mapoly0009s0008 Marchantia polymorpha HOM05D003870 ORTHO05D004567 1.0e-12 77.0 143 39.9
unitig_747.g21485 Utricularia gibba HOM05D003870 ORTHO05D004567 5.5e-11 71.2 109 45.0
Duzib192G0641 Durio zibethinus HOM05D003870 ORTHO05D004567 1.1e-06 57.0 98 45.9
MD17G1191200 Malus domestica HOM05D003870 ORTHO05D004567 1.1e-06 57.0 58 62.1


User provided reference genes

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