Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48759 Brassica carinata HOM05D006794 ORTHO05D008322 6.1e-112 407.5 211 100.0
C01p46200 Brassica napus HOM05D006794 ORTHO05D008322 6.1e-112 407.5 211 100.0
BolC1t04582H Brassica oleracea HOM05D006794 ORTHO05D008322 6.1e-112 407.5 211 100.0
Sp3g16080 Schrenkiella parvula HOM05D006794 ORTHO05D008322 1.2e-94 350.1 211 87.7
BraA01t03709Z Brassica rapa HOM05D006794 ORTHO05D008322 4.6e-83 311.6 213 83.1
A03p40470 Brassica napus HOM05D006794 ORTHO05D008322 3.0e-82 308.9 210 81.4
BcaB04g20803 Brassica carinata HOM05D006794 ORTHO05D008322 5.1e-82 308.1 212 81.1
C03p49310 Brassica napus HOM05D006794 ORTHO05D008322 5.1e-82 308.1 210 80.0
BcaC01g03720 Brassica carinata HOM05D006794 ORTHO05D008322 6.6e-82 307.8 210 80.0
A01p36460 Brassica napus HOM05D006794 ORTHO05D008322 2.5e-81 305.8 216 81.0
BcaB04g18974 Brassica carinata HOM05D006794 ORTHO05D008322 6.4e-77 291.2 211 78.2
Thhalv10021515m.g Eutrema salsugineum HOM05D006794 ORTHO05D008322 1.6e-75 286.6 213 77.0
Carub.0003s1768 Capsella rubella HOM05D006794 ORTHO05D008322 6.4e-69 264.6 212 73.1
AL3G31120 Arabidopsis lyrata HOM05D006794 ORTHO05D008322 2.6e-62 242.7 215 67.9
CARHR093280 Cardamine hirsuta HOM05D006794 ORTHO05D008322 7.4e-57 224.6 187 69.5
AT3G17950 Arabidopsis thaliana HOM05D006794 ORTHO05D008322 6.0e-51 204.9 182 67.0
THA.LOC104825595 Tarenaya hassleriana HOM05D006794 ORTHO05D008322 5.0e-45 185.3 213 57.7
CiPaw.15G144200 Carya illinoinensis HOM05D006794 ORTHO05D008322 4.3e-41 172.2 218 53.7
QL10p030576 Quercus lobata HOM05D006794 ORTHO05D008322 2.8e-40 169.5 216 53.7
CiPaw.16G095900 Carya illinoinensis HOM05D006794 ORTHO05D008322 2.0e-38 163.3 217 53.0
Duzib084G0148 Durio zibethinus HOM05D006794 ORTHO05D008322 2.9e-37 159.5 218 51.8
Thecc.03G058000 Theobroma cacao HOM05D006794 ORTHO05D008322 4.2e-36 155.6 220 52.7
Duzib068G0617 Durio zibethinus HOM05D006794 ORTHO05D008322 2.7e-35 152.9 223 52.0
Cfa021396 Carpinus fangiana HOM05D006794 ORTHO05D008322 7.9e-35 151.4 218 50.5
GSVIVG01008463001 Vitis vinifera HOM05D006794 ORTHO05D008322 6.7e-34 148.3 216 51.9
Gorai.008G290400 Gossypium raimondii HOM05D006794 ORTHO05D008322 2.5e-33 146.4 219 48.9
C05p26280 Brassica napus HOM05D006794 ORTHO05D008322 3.3e-33 146.0 145 64.8
Aa31LG8G4820 Aethionema arabicum HOM05D006794 ORTHO05D008322 4.3e-33 145.6 187 48.7
Psat4g000080 Pisum sativum HOM05D006794 ORTHO05D008322 4.3e-33 145.6 220 49.1
Lalb_Chr16g0386961 Lupinus albus HOM05D006794 ORTHO05D008322 9.7e-33 144.4 211 50.2
Atru.chr9.1672 Acer truncatum HOM05D006794 ORTHO05D008322 1.1e-31 141.0 220 47.3
FAN13G2800 Fragaria x ananassa HOM05D006794 ORTHO05D008322 1.4e-31 140.6 213 47.9
Oeu046160.1 Olea europaea HOM05D006794 ORTHO05D008322 2.4e-31 139.8 217 47.9
ClCG04G010570 Citrullus lanatus HOM05D006794 ORTHO05D008322 4.1e-31 139.0 215 47.4
Cpa.g.sc3.383 Carica papaya HOM05D006794 ORTHO05D008322 6.9e-31 138.3 219 48.9
Lalb_Chr22g0353521 Lupinus albus HOM05D006794 ORTHO05D008322 9.1e-31 137.9 212 47.2
TWI81G0550 Tripterygium wilfordii HOM05D006794 ORTHO05D008322 1.5e-30 137.1 218 48.6
Manes.06G005000 Manihot esculenta HOM05D006794 ORTHO05D008322 2.6e-30 136.3 212 48.6
Cc04_g06140 Coffea canephora HOM05D006794 ORTHO05D008322 3.4e-30 136.0 227 48.0
Dinv08202 Davidia involucrata HOM05D006794 ORTHO05D008322 4.5e-30 135.6 212 48.1
PSO210G4985 Papaver somniferum HOM05D006794 ORTHO05D008322 1.3e-29 134.0 235 44.7
Nn4g24277 Nelumbo nucifera HOM05D006794 ORTHO05D008322 1.4e-28 130.6 235 44.7
Sabra15G0031400 Salix brachista HOM05D006794 ORTHO05D008322 3.2e-28 129.4 218 46.3
Phvul.002G330800 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 5.5e-28 128.6 216 47.2
PSO832G1236 Papaver somniferum HOM05D006794 ORTHO05D008322 7.2e-28 128.3 235 43.0
arahy.Tifrunner.gnm1.ann1.KQ26AL Arachis hypogaea HOM05D006794 ORTHO05D008322 1.2e-27 127.5 204 48.5
arahy.Tifrunner.gnm1.ann1.P2R0G6 Arachis hypogaea HOM05D006794 ORTHO05D008322 1.2e-27 127.5 204 48.5
PGR083G0475 Punica granatum HOM05D006794 ORTHO05D008322 2.1e-27 126.7 222 47.7
Glyma.09G174700 Glycine max HOM05D006794 ORTHO05D008322 1.0e-26 124.4 215 44.7
TPR.G8635 Trifolium pratense HOM05D006794 ORTHO05D008322 1.0e-26 124.4 215 45.6
VMungo0251G1205 Vigna mungo HOM05D006794 ORTHO05D008322 1.0e-26 124.4 215 46.0
RcHm_v2.0_Chr7g0178231 Rosa chinensis HOM05D006794 ORTHO05D008322 1.4e-26 124.0 213 45.5
FvH4_5g17460 Fragaria vesca HOM05D006794 ORTHO05D008322 1.8e-26 123.6 213 45.1
FAN18G3906 Fragaria x ananassa HOM05D006794 ORTHO05D008322 1.8e-26 123.6 213 45.1
MBI19_g22477_MAGBIO Magnolia biondii HOM05D006794 ORTHO05D008322 1.8e-26 123.6 214 43.5
Medtr6g069830 Medicago truncatula HOM05D006794 ORTHO05D008322 1.8e-26 123.6 214 45.3
CSS0048798 Camellia sinensis var. sinensis HOM05D006794 ORTHO05D008322 5.1e-26 122.1 223 46.6
CANSAT80G2635 Cannabis sativa HOM05D006794 ORTHO05D008322 5.1e-26 122.1 223 44.8
Sopen03g037580 Solanum pennellii HOM05D006794 ORTHO05D008322 5.1e-26 122.1 220 46.4
TAR622G0128 Trochodendron aralioides HOM05D006794 ORTHO05D008322 8.8e-26 121.3 204 47.1
Hma1.2p1_0163F.1_g073020 Hydrangea macrophylla HOM05D006794 ORTHO05D008322 2.6e-25 119.8 220 45.0
Lj4g0014763 Lotus japonicus HOM05D006794 ORTHO05D008322 2.6e-25 119.8 203 45.3
Solyc03g118630.3 Solanum lycopersicum HOM05D006794 ORTHO05D008322 2.6e-25 119.8 220 45.9
Phvul.004G150000 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 3.3e-25 119.4 218 44.5
Potri.012G045700 Populus trichocarpa HOM05D006794 ORTHO05D008322 3.3e-25 119.4 215 43.7
MD14G1237200 Malus domestica HOM05D006794 ORTHO05D008322 4.4e-25 119.0 220 44.5
Sed0017400 Sechium edule HOM05D000034 ORTHO05D000037 5.7e-25 118.6 214 43.5
Glyma.08G055100 Glycine max HOM05D006794 ORTHO05D008322 7.4e-25 118.2 215 45.6
Lj2g0023485 Lotus japonicus HOM05D006794 ORTHO05D008322 7.4e-25 118.2 220 47.3
VMungo0464G2014 Vigna mungo HOM05D006794 ORTHO05D008322 7.4e-25 118.2 218 44.0
arahy.Tifrunner.gnm1.ann1.PNUX28 Arachis hypogaea HOM05D006794 ORTHO05D008322 1.3e-24 117.5 218 45.9
Migut.D01320 Erythranthe guttata HOM05D006794 ORTHO05D008322 1.3e-24 117.5 208 45.7
arahy.Tifrunner.gnm1.ann1.AT27RE Arachis hypogaea HOM05D006794 ORTHO05D008322 1.7e-24 117.1 218 45.9
CANSAT80G0659 Cannabis sativa HOM05D006794 ORTHO05D008322 1.7e-24 117.1 226 44.2
PGSC0003DMG400005675 Solanum tuberosum HOM05D006794 ORTHO05D008322 4.8e-24 115.5 223 45.7
Lsat_1_v5_gn_5_175480 Lactuca sativa HOM05D006794 ORTHO05D008322 2.4e-23 113.2 221 42.5
Potri.015G036900 Populus trichocarpa HOM05D006794 ORTHO05D008322 2.4e-23 113.2 216 45.4
Nitab4.5_0001264g0020 Nicotiana tabacum HOM05D006794 ORTHO05D008322 3.1e-23 112.8 228 43.4
Eucgr.B00988 Eucalyptus grandis HOM05D006794 ORTHO05D008322 4.1e-23 112.5 221 42.5
HanXRQChr01g0012541 Helianthus annuus HOM05D006794 ORTHO05D008322 4.1e-23 112.5 230 41.7
Sed0024550 Sechium edule HOM05D006794 ORTHO05D008322 4.1e-23 112.5 214 42.5
FAN04G0930 Fragaria x ananassa HOM05D006794 ORTHO05D008322 1.5e-22 110.5 213 42.7
FAN08G0189 Fragaria x ananassa HOM05D006794 ORTHO05D008322 2.0e-22 110.2 210 42.4
Prupe.5G234500 Prunus persica HOM05D006794 ORTHO05D008322 3.5e-22 109.4 224 42.9
MD06G1228000 Malus domestica HOM05D006794 ORTHO05D008322 1.0e-21 107.8 222 43.7
MD01G1007300 Malus domestica HOM05D006794 ORTHO05D008322 2.9e-21 106.3 210 43.3
Ca_17183_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 4.7e-19 99.0 117 53.8
MELO3C002138.2 Cucumis melo HOM05D006794 ORTHO05D008322 1.4e-18 97.4 117 52.1
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 4.0e-18 95.9 188 44.1
ECA248G0187 Erigeron canadensis HOM05D006794 ORTHO05D008322 5.2e-18 95.5 226 39.8
Gohir.A12G269600 Gossypium hirsutum HOM05D006794 ORTHO05D008322 1.5e-17 94.0 175 42.3
Haze_18880 Corylus avellana HOM05D006794 ORTHO05D008322 2.0e-17 93.6 177 42.9
DCAR_013026 Daucus carota HOM05D006794 ORTHO05D008322 4.4e-17 92.4 213 41.8
Gohir.D12G270100 Gossypium hirsutum HOM05D006794 ORTHO05D008322 8.2e-16 88.2 175 41.1
HPP92_008000 Vanilla planifolia HOM05D006794 ORTHO05D008322 1.6e-14 84.0 209 35.9
COL.COLO4_04996 Corchorus olitorius HOM05D006794 ORTHO05D008322 2.6e-14 83.2 177 41.2
Glyma.07G103100 Glycine max HOM05D006794 ORTHO05D008322 1.7e-13 80.5 94 56.4
SEGI_38129 Sequoiadendron giganteum HOM05D003527 ORTHO05D004099 1.1e-12 77.8 174 37.9
CANSAT64G0030 Cannabis sativa HOM05D006794 ORTHO05D008322 1.5e-12 77.4 182 37.9
Sabra12G0031800 Salix brachista HOM05D006794 ORTHO05D008322 1.5e-12 77.4 96 51.0
Ca_25344_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 7.2e-12 75.1 170 40.6
vmacro16409 Vaccinium macrocarpon HOM05D006794 ORTHO05D008322 1.6e-11 73.9 193 36.8
CDE05G2986 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 1.0e-10 71.2 179 37.4
Psat1g031080 Pisum sativum HOM05D006794 ORTHO05D008322 1.8e-10 70.5 172 40.7
Peaxi162Scf00314g00315 Petunia axillaris HOM05D006794 ORTHO05D008322 2.3e-10 70.1 114 47.4
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 5.2e-10 68.9 171 34.5
Ciclev10009814m.g Citrus clementina HOM05D006794 ORTHO05D008322 8.8e-10 68.2 82 48.8
SalBow1G0629 Salvia bowleyana HOM05D006794 ORTHO05D008322 8.8e-10 68.2 194 39.7
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 1.5e-09 67.4 181 35.9
Nitab4.5_0010223g0030 Nicotiana tabacum HOM05D006794 ORTHO05D008322 2.0e-09 67.0 117 47.0
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 2.6e-09 66.6 177 33.3
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 5.7e-09 65.5 170 35.3
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 5.7e-09 65.5 205 33.7
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 5.7e-09 65.5 178 34.8
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 7.5e-09 65.1 171 35.1
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 7.5e-09 65.1 204 33.8
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 7.5e-09 65.1 203 33.0
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 7.5e-09 65.1 170 35.3
SGA_v2.0_scaffold172G39018 Striga asiatica HOM05D006794 ORTHO05D008322 7.5e-09 65.1 153 42.5
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 9.8e-09 64.7 180 36.7
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 1.7e-08 63.9 208 32.7
Dinv16990 Davidia involucrata HOM05D003527 ORTHO05D004099 1.7e-08 63.9 173 34.7
Dinv42939 Davidia involucrata HOM05D003527 ORTHO05D004099 1.7e-08 63.9 173 34.7
Dinv43161 Davidia involucrata HOM05D003527 ORTHO05D004099 1.7e-08 63.9 173 34.7
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 1.7e-08 63.9 174 36.2
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 2.2e-08 63.5 178 31.5
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 2.8e-08 63.2 183 36.1
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 2.8e-08 63.2 175 35.4
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 3.7e-08 62.8 175 35.4
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 3.7e-08 62.8 176 34.1
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 4.8e-08 62.4 169 35.5
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 4.8e-08 62.4 173 34.7
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 6.3e-08 62.0 173 37.0
Nn2g15270 Nelumbo nucifera HOM05D006794 ORTHO05D008322 8.3e-08 61.6 134 40.3
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 8.3e-08 61.6 204 34.3
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.4e-07 60.8 172 34.9
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.4e-07 60.8 172 34.9
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 1.8e-07 60.5 179 34.6
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.4e-07 60.1 176 33.5
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 3.1e-07 59.7 175 34.3
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 3.1e-07 59.7 177 35.0
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 5.4e-07 58.9 181 34.8
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 5.4e-07 58.9 167 33.5
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 5.4e-07 58.9 176 34.1
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 7.0e-07 58.5 176 33.5
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 9.1e-07 58.2 173 34.7
CDE07G1050 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 1.2e-06 57.8 43 72.1
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 1.2e-06 57.8 187 32.1
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 1.6e-06 57.4 35 82.9
Psat0s4138g0040 Pisum sativum HOM05D003527 ORTHO05D004099 1.6e-06 57.4 129 35.7
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 2.7e-06 56.6 169 35.5
SEGI_17757 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 2.7e-06 56.6 154 35.7
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 3.5e-06 56.2 184 33.2
Medtr7g059410 Medicago truncatula HOM05D003527 ORTHO05D004099 3.5e-06 56.2 128 39.8
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 4.5e-06 55.8 179 33.5
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 4.5e-06 55.8 170 34.1
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 5.9e-06 55.5 176 33.0
Oeu004474.1 Olea europaea HOM05D006794 ORTHO05D008322 5.9e-06 55.5 78 50.0
Atru.chr8.1961 Acer truncatum HOM05D003527 ORTHO05D004099 7.7e-06 55.1 172 33.1
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 7.7e-06 55.1 128 37.5


User provided reference genes

Program Settings