Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p25890 Brassica napus HOM05D007712 ORTHO05D009755 3.6e-21 104.0 53 100.0
BcaNung00160 Brassica carinata HOM05D007712 ORTHO05D009755 1.8e-20 101.7 53 96.2
AT4G16695 Arabidopsis thaliana HOM05D007712 ORTHO05D009755 1.2e-19 99.0 52 94.2
Aa31LG2G12880 Aethionema arabicum HOM05D007712 ORTHO05D009755 2.0e-19 98.2 53 90.6
AL7G38040 Arabidopsis lyrata HOM05D007712 ORTHO05D009755 2.6e-19 97.8 52 92.3
A01p20590 Brassica napus HOM05D007712 ORTHO05D009755 3.4e-19 97.4 51 98.0
BraA01t01987Z Brassica rapa HOM05D007712 ORTHO05D009755 3.4e-19 97.4 51 98.0
Carub.0007s2470 Capsella rubella HOM05D007712 ORTHO05D009755 5.8e-19 96.7 52 90.4
CARHR223220 Cardamine hirsuta HOM05D007712 ORTHO05D009755 5.8e-19 96.7 52 90.4
Gohir.A12G216100 Gossypium hirsutum HOM05D007712 ORTHO05D009755 9.9e-19 95.9 53 88.7
Gohir.D12G218700 Gossypium hirsutum HOM05D007712 ORTHO05D009755 1.3e-18 95.5 52 88.5
Gorai.008G234300 Gossypium raimondii HOM05D007712 ORTHO05D009755 1.3e-18 95.5 52 88.5
COL.COLO4_37150 Corchorus olitorius HOM05D007712 ORTHO05D009755 1.7e-18 95.1 53 84.9
Duzib205G0100 Durio zibethinus HOM05D007712 ORTHO05D009755 2.9e-18 94.4 53 84.9
Sp7g15330 Schrenkiella parvula HOM05D007712 ORTHO05D009755 6.4e-18 93.2 50 92.0
BcaC06g33508 Brassica carinata HOM05D007712 ORTHO05D009755 8.4e-18 92.8 53 92.5
C07p48200 Brassica napus HOM05D007712 ORTHO05D009755 8.4e-18 92.8 53 92.5
Cpa.g.sc29.177 Carica papaya HOM05D007712 ORTHO05D009755 8.4e-18 92.8 53 86.8
Nn6g33914 Nelumbo nucifera HOM05D007712 ORTHO05D009755 1.4e-17 92.0 52 80.8
BolC1t02534H Brassica oleracea HOM05D007712 ORTHO05D009755 1.9e-17 91.7 47 100.0
CSS0012443 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 1.9e-17 91.7 53 83.0
Haze_07896 Corylus avellana HOM05D007712 ORTHO05D009755 1.9e-17 91.7 53 83.0
Glyma.05G061200 Glycine max HOM05D007712 ORTHO05D009755 1.9e-17 91.7 53 84.9
Glyma.17G143000 Glycine max HOM05D007712 ORTHO05D009755 1.9e-17 91.7 53 84.9
CSS0007152 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 2.4e-17 91.3 52 82.7
Prupe.5G067000 Prunus persica HOM05D007712 ORTHO05D009755 2.4e-17 91.3 52 82.7
Duzib068G1393 Durio zibethinus HOM05D007712 ORTHO05D009755 3.2e-17 90.9 53 83.0
RcHm_v2.0_Chr7g0203631 Rosa chinensis HOM05D007712 ORTHO05D009755 3.2e-17 90.9 52 80.8
Thecc.03G249200 Theobroma cacao HOM05D007712 ORTHO05D009755 3.2e-17 90.9 52 80.8
MD06G1056600 Malus domestica HOM05D007712 ORTHO05D009755 4.2e-17 90.5 52 80.8
Ca_21974_v3 Cicer arietinum L. HOM05D007712 ORTHO05D009755 5.4e-17 90.1 52 82.7
MD04G1062500 Malus domestica HOM05D007712 ORTHO05D009755 5.4e-17 90.1 52 80.8
Medtr4g100770 Medicago truncatula HOM05D007712 ORTHO05D009755 7.1e-17 89.7 52 82.7
Manes.01G082000 Manihot esculenta HOM05D007712 ORTHO05D009755 9.3e-17 89.4 52 78.8
DCAR_006839 Daucus carota HOM05D007712 ORTHO05D009755 1.2e-16 89.0 53 81.1
Phvul.003G221800 Phaseolus vulgaris HOM05D007712 ORTHO05D009755 1.2e-16 89.0 53 83.0
Psat4g072600 Pisum sativum HOM05D007712 ORTHO05D009755 1.2e-16 89.0 52 82.7
Potri.003G078100 Populus trichocarpa HOM05D007712 ORTHO05D009755 1.2e-16 89.0 53 84.9
BolC7t45343H Brassica oleracea HOM05D007712 ORTHO05D009755 2.1e-16 88.2 51 92.2
Hma1.2p1_0316F.1_g122970 Hydrangea macrophylla HOM05D007712 ORTHO05D009755 2.1e-16 88.2 53 83.0
Manes.02G041000 Manihot esculenta HOM05D007712 ORTHO05D009755 2.1e-16 88.2 52 76.9
VMungo0251G2826 Vigna mungo HOM05D007712 ORTHO05D009755 2.1e-16 88.2 52 82.7
Nn1g00955 Nelumbo nucifera HOM05D007712 ORTHO05D009755 2.7e-16 87.8 52 78.8
TWI60G0592 Tripterygium wilfordii HOM05D007712 ORTHO05D009755 2.7e-16 87.8 52 80.8
CiPaw.11G080700 Carya illinoinensis HOM05D007712 ORTHO05D009755 3.5e-16 87.4 52 78.8
ClCG01G004140 Citrullus lanatus HOM05D007712 ORTHO05D009755 6.0e-16 86.7 52 76.9
Potri.001G156500 Populus trichocarpa HOM05D007712 ORTHO05D009755 1.0e-15 85.9 54 79.6
EL10Ac5g12378 Beta vulgaris HOM05D007712 ORTHO05D009755 1.8e-15 85.1 52 80.8
Ciclev10023737m.g Citrus clementina HOM05D007712 ORTHO05D009755 1.8e-15 85.1 51 78.4
CiPaw.12G051200 Carya illinoinensis HOM05D007712 ORTHO05D009755 2.3e-15 84.7 53 81.1
DCAR_008500 Daucus carota HOM05D007712 ORTHO05D009755 2.3e-15 84.7 53 73.6
Lsat_1_v5_gn_6_18000 Lactuca sativa HOM05D007712 ORTHO05D009755 2.3e-15 84.7 53 79.2
THA.LOC104815500 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 2.3e-15 84.7 53 81.1
Lj4g0003995 Lotus japonicus HOM05D007712 ORTHO05D009755 3.9e-15 84.0 49 83.7
PSO782G1928 Papaver somniferum HOM05D007712 ORTHO05D009755 5.1e-15 83.6 53 73.6
PGR031G2779 Punica granatum HOM05D007712 ORTHO05D009755 5.1e-15 83.6 53 75.5
Duzib268G1849 Durio zibethinus HOM05D007712 ORTHO05D009755 8.7e-15 82.8 51 74.5
PSO063G7306 Papaver somniferum HOM05D007712 ORTHO05D009755 8.7e-15 82.8 52 71.2
HanXRQChr16g0510951 Helianthus annuus HOM05D007712 ORTHO05D009755 1.1e-14 82.4 54 75.9
CANSAT21G0844 Cannabis sativa HOM05D007712 ORTHO05D009755 1.5e-14 82.0 48 81.2
MELO3C005524.2 Cucumis melo HOM05D007712 ORTHO05D009755 1.9e-14 81.6 54 75.9
Sed0021045 Sechium edule HOM05D007712 ORTHO05D009755 1.9e-14 81.6 54 79.6
TAR629G1768 Trochodendron aralioides HOM05D007712 ORTHO05D009755 2.5e-14 81.3 52 75.0
Migut.A01117 Erythranthe guttata HOM05D007712 ORTHO05D009755 3.3e-14 80.9 55 78.2
HanXRQChr11g0345641 Helianthus annuus HOM05D007712 ORTHO05D009755 3.3e-14 80.9 48 81.2
ATR0317G046 Amborella trichopoda HOM05D007712 ORTHO05D009755 9.6e-14 79.3 53 67.9
Eucgr.E00411 Eucalyptus grandis HOM05D007712 ORTHO05D009755 1.3e-13 79.0 58 72.4
HanXRQChr13g0400821 Helianthus annuus HOM05D007712 ORTHO05D009755 1.3e-13 79.0 48 79.2
BraA08t33255Z Brassica rapa HOM05D007712 ORTHO05D009755 1.6e-13 78.6 45 86.7
Nitab4.5_0001381g0130 Nicotiana tabacum HOM05D007712 ORTHO05D009755 1.6e-13 78.6 48 79.2
Nitab4.5_0002289g0090 Nicotiana tabacum HOM05D007712 ORTHO05D009755 1.6e-13 78.6 48 79.2
Solyc08g078480.3 Solanum lycopersicum HOM05D007712 ORTHO05D009755 3.7e-13 77.4 48 79.2
PGSC0003DMG402004821 Solanum tuberosum HOM05D007712 ORTHO05D009755 3.7e-13 77.4 48 79.2
Pp3c5_22940 Physcomitrium patens HOM05D007712 ORTHO05D009755 8.1e-13 76.3 52 67.3
vmacro00192 Vaccinium macrocarpon HOM05D007712 ORTHO05D009755 1.8e-12 75.1 54 70.4
Mapoly0033s0142 Marchantia polymorpha HOM05D007712 ORTHO05D009755 2.4e-12 74.7 52 65.4
CAN.G1178.28 Capsicum annuum HOM05D007712 ORTHO05D009755 3.1e-12 74.3 48 77.1
unitig_744.g24472 Utricularia gibba HOM05D007712 ORTHO05D009755 5.3e-12 73.6 48 75.0
Lalb_Chr16g0386781 Lupinus albus HOM05D007712 ORTHO05D009755 6.9e-12 73.2 47 74.5
Lalb_Chr05g0221211 Lupinus albus HOM05D007712 ORTHO05D009755 3.4e-11 70.9 47 70.2
SHI02516 Sapria himalayana HOM05D007712 ORTHO05D009755 3.4e-11 70.9 47 78.7
HPP92_021033 Vanilla planifolia HOM05D007712 ORTHO05D009755 3.4e-11 70.9 50 68.0
HPP92_027434 Vanilla planifolia HOM05D007712 ORTHO05D009755 3.4e-11 70.9 50 68.0
A03p50120 Brassica napus HOM05D007712 ORTHO05D009755 4.5e-11 70.5 46 78.3
CBR_g755 Chara braunii HOM05D007712 ORTHO05D009755 1.4e-09 65.5 47 63.8
FAN08G0196 Fragaria x ananassa HOM05D007712 ORTHO05D009755 6.0e-08 60.1 29 100.0
FAN04G1285 Fragaria x ananassa HOM05D007712 ORTHO05D009755 3.0e-07 57.8 29 96.6
THA.LOC104815513 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 3.9e-07 57.4 32 87.5
Os03g0102000 Oryza sativa ssp. japonica HOM05D007712 ORTHO05D009755 1.9e-06 55.1 58 53.4
Atru.chr1.372 Acer truncatum HOM05D007712 ORTHO05D009755 5.6e-06 53.5 32 81.2
Atru.chr2.3306 Acer truncatum HOM05D007712 ORTHO05D009755 5.6e-06 53.5 32 81.2


User provided reference genes

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