Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p25560 Brassica napus HOM05D000234 ORTHO05D019884 9.0e-72 273.5 137 100.0
BolC1t02506H Brassica oleracea HOM05D000234 ORTHO05D019884 2.0e-71 272.3 137 99.3
C03p71200 Brassica napus HOM05D000234 ORTHO05D019884 3.0e-59 231.9 143 86.7
BcaNung01117 Brassica carinata HOM05D000234 ORTHO05D019884 3.5e-23 112.1 115 57.4
BcaC03g15083 Brassica carinata HOM05D000234 ORTHO05D000335 5.0e-22 108.2 63 82.5
BolC2t08710H Brassica oleracea HOM05D000234 ORTHO05D000335 5.0e-22 108.2 63 82.5
C02p26360 Brassica napus HOM05D000234 ORTHO05D000335 1.1e-21 107.1 63 81.0
Thhalv10018068m.g Eutrema salsugineum HOM05D000234 ORTHO05D000335 1.5e-21 106.7 63 82.5
CARHR062360 Cardamine hirsuta HOM05D000234 ORTHO05D000335 7.2e-21 104.4 63 79.4
Sp5g24490 Schrenkiella parvula HOM05D000234 ORTHO05D000335 3.6e-20 102.1 63 76.2
Carub.0002s1604 Capsella rubella HOM05D000234 ORTHO05D000335 4.7e-20 101.7 61 78.7
BcaB03g15474 Brassica carinata HOM05D000234 ORTHO05D032181 1.4e-19 100.1 63 74.6
AT1G69440 Arabidopsis thaliana HOM05D000234 ORTHO05D000335 8.8e-19 97.4 61 75.4
BcaB05g24451 Brassica carinata HOM05D000234 ORTHO05D000335 3.4e-18 95.5 62 77.4
A07p31620 Brassica napus HOM05D000234 ORTHO05D000335 3.4e-18 95.5 64 70.3
BraA07t30789Z Brassica rapa HOM05D000234 ORTHO05D000335 3.4e-18 95.5 64 70.3
C06p36960 Brassica napus HOM05D000234 ORTHO05D000335 4.4e-18 95.1 64 70.3
BcaC08g45891 Brassica carinata HOM05D000234 ORTHO05D000335 7.5e-18 94.4 64 70.3
BolC6t38806H Brassica oleracea HOM05D000234 ORTHO05D000335 7.5e-18 94.4 64 70.3
AL2G28550 Arabidopsis lyrata HOM05D000234 ORTHO05D000335 1.7e-17 93.2 61 73.8
Aa31LG4G11390 Aethionema arabicum HOM05D000234 ORTHO05D000335 8.3e-17 90.9 58 74.1
BraA02t06644Z Brassica rapa HOM05D000234 ORTHO05D000335 8.3e-17 90.9 50 84.0
THA.LOC104822036 Tarenaya hassleriana HOM05D000234 ORTHO05D000335 1.4e-16 90.1 66 69.7
Ciclev10030593m.g Citrus clementina HOM05D000234 ORTHO05D000335 4.1e-16 88.6 58 72.4
Dinv34098 Davidia involucrata HOM05D000234 ORTHO05D000335 2.7e-15 85.9 60 66.7
Gohir.A05G305501 Gossypium hirsutum HOM05D000234 ORTHO05D000335 2.7e-15 85.9 58 70.7
Gohir.D05G305500 Gossypium hirsutum HOM05D000234 ORTHO05D000335 2.7e-15 85.9 58 70.7
Gorai.009G325500 Gossypium raimondii HOM05D000234 ORTHO05D000335 2.7e-15 85.9 58 70.7
MD13G1068200 Malus domestica HOM05D000234 ORTHO05D000335 2.7e-15 85.9 58 67.2
Atru.chr11.1715 Acer truncatum HOM05D000234 ORTHO05D000335 3.5e-15 85.5 62 66.1
Prupe.1G279900 Prunus persica HOM05D000234 ORTHO05D000335 5.9e-15 84.7 58 67.2
Sed0014424 Sechium edule HOM05D000234 ORTHO05D000335 5.9e-15 84.7 60 65.0
Dinv16690 Davidia involucrata HOM05D000234 ORTHO05D019884 7.7e-15 84.3 58 67.2
Gohir.A13G078200 Gossypium hirsutum HOM05D000234 ORTHO05D000335 7.7e-15 84.3 63 61.9
Gohir.D13G078200 Gossypium hirsutum HOM05D000234 ORTHO05D000335 7.7e-15 84.3 63 61.9
PSO063G2826 Papaver somniferum HOM05D000234 ORTHO05D000335 7.7e-15 84.3 62 62.9
QL03p069820 Quercus lobata HOM05D000234 ORTHO05D000335 7.7e-15 84.3 58 69.0
ClCG05G023990 Citrullus lanatus HOM05D000234 ORTHO05D000335 1.3e-14 83.6 60 65.0
MELO3C012127.2 Cucumis melo HOM05D000234 ORTHO05D000335 1.3e-14 83.6 60 65.0
CsaV3_5G033060 Cucumis sativus L. HOM05D000234 ORTHO05D000335 1.3e-14 83.6 60 65.0
Manes.05G106500 Manihot esculenta HOM05D000234 ORTHO05D000335 1.3e-14 83.6 58 69.0
Os03g0449200 Oryza sativa ssp. japonica HOM05D000234 ORTHO05D000335 1.3e-14 83.6 59 66.1
Thecc.02G339200 Theobroma cacao HOM05D000234 ORTHO05D000335 1.3e-14 83.6 58 67.2
Zm00001eb020470 Zea mays HOM05D000234 ORTHO05D000335 1.3e-14 83.6 60 63.3
Cpa.g.sc1.68 Carica papaya HOM05D000234 ORTHO05D000335 1.7e-14 83.2 60 61.7
COL.COLO4_27969 Corchorus olitorius HOM05D000234 ORTHO05D000335 1.7e-14 83.2 58 67.2
Gorai.013G089400 Gossypium raimondii HOM05D000234 ORTHO05D000335 2.2e-14 82.8 63 60.3
Lj6A784T67 Lonicera japonica HOM05D000234 ORTHO05D000335 2.2e-14 82.8 58 67.2
CANSAT64G1300 Cannabis sativa HOM05D000234 ORTHO05D000335 2.9e-14 82.4 60 63.3
Duzib251G0888 Durio zibethinus HOM05D000234 ORTHO05D000335 2.9e-14 82.4 58 65.5
Potri.010G163800 Populus trichocarpa HOM05D000234 ORTHO05D000335 2.9e-14 82.4 58 63.8
Hund25205 Selenicereus undatus HOM05D000234 ORTHO05D000335 3.8e-14 82.0 60 65.0
CSS0049265 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 5.0e-14 81.6 60 63.3
CSS0049716 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D000335 5.0e-14 81.6 60 63.3
Manes.01G032300 Manihot esculenta HOM05D000234 ORTHO05D000335 5.0e-14 81.6 60 61.7
Sabra10G0124500 Salix brachista HOM05D000234 ORTHO05D000335 6.5e-14 81.3 58 62.1
Actinidia31959 Actinidia chinensis HOM05D000234 ORTHO05D000335 8.5e-14 80.9 59 66.1
Cfa008926 Carpinus fangiana HOM05D000234 ORTHO05D000335 8.5e-14 80.9 58 63.8
Haze_11955 Corylus avellana HOM05D000234 ORTHO05D000335 8.5e-14 80.9 58 63.8
Sc04g0007850 Simmondsia chinensis HOM05D000234 ORTHO05D000335 8.5e-14 80.9 58 65.5
TWI79G1549 Tripterygium wilfordii HOM05D000234 ORTHO05D000335 8.5e-14 80.9 60 63.3
Aqoxy3G03497 Aquilegia oxysepala HOM05D000234 ORTHO05D000335 1.1e-13 80.5 58 63.8
CiPaw.05G129800 Carya illinoinensis HOM05D000234 ORTHO05D000335 1.1e-13 80.5 63 61.9
CANSAT35G1666 Cannabis sativa HOM05D000234 ORTHO05D000335 1.5e-13 80.1 58 63.8
PGR119G1286 Punica granatum HOM05D000234 ORTHO05D000335 1.9e-13 79.7 58 63.8
TAR006G0003 Trochodendron aralioides HOM05D000234 ORTHO05D000335 1.9e-13 79.7 63 58.7
TAR371G1034 Trochodendron aralioides HOM05D000234 ORTHO05D000335 2.5e-13 79.3 58 62.1
MD16G1067000 Malus domestica HOM05D000234 ORTHO05D000335 3.2e-13 79.0 58 62.1
vmacro01345 Vaccinium macrocarpon HOM05D000234 ORTHO05D000335 3.2e-13 79.0 60 61.7
Nn4g23284 Nelumbo nucifera HOM05D000234 ORTHO05D000335 4.2e-13 78.6 63 57.1
DCAR_030991 Daucus carota HOM05D000234 ORTHO05D000335 5.5e-13 78.2 60 58.3
Rhsim12G0078000 Rhododendron simsii HOM05D000234 ORTHO05D000335 5.5e-13 78.2 60 61.7
SalBow8G0909 Salvia bowleyana HOM05D000234 ORTHO05D000335 5.5e-13 78.2 59 61.0
Glyma.01G053100 Glycine max HOM05D000234 ORTHO05D000335 7.2e-13 77.8 58 60.3
Lsat_1_v5_gn_4_10521 Lactuca sativa HOM05D000234 ORTHO05D000335 7.2e-13 77.8 58 58.6
GSVIVG01012490001 Vitis vinifera HOM05D000234 ORTHO05D000335 7.2e-13 77.8 51 70.6
arahy.Tifrunner.gnm1.ann1.KK4X3H Arachis hypogaea HOM05D000234 ORTHO05D000335 9.4e-13 77.4 58 60.3
arahy.Tifrunner.gnm1.ann1.YH7FH0 Arachis hypogaea HOM05D000234 ORTHO05D000335 9.4e-13 77.4 58 60.3
CDE02G4258 Ceratophyllum demersum HOM05D000234 ORTHO05D000335 9.4e-13 77.4 63 57.1
Ca_04879_v3 Cicer arietinum L. HOM05D000234 ORTHO05D000335 9.4e-13 77.4 60 60.0
FvH4_4g30730 Fragaria vesca HOM05D000234 ORTHO05D000335 9.4e-13 77.4 58 62.1
FAN07G0537 Fragaria x ananassa HOM05D000234 ORTHO05D000335 9.4e-13 77.4 58 62.1
FAN12G1224 Fragaria x ananassa HOM05D000234 ORTHO05D000335 9.4e-13 77.4 58 62.1
FAN17G2305 Fragaria x ananassa HOM05D000234 ORTHO05D000335 9.4e-13 77.4 58 62.1
Phvul.003G046700 Phaseolus vulgaris HOM05D000234 ORTHO05D000335 9.4e-13 77.4 58 60.3
BcaB06g26501 Brassica carinata HOM05D000234 ORTHO05D019884 1.2e-12 77.0 45 77.8
Psat2g126320 Pisum sativum HOM05D000234 ORTHO05D000335 1.2e-12 77.0 60 56.7
TAR622G0762 Trochodendron aralioides HOM05D000234 ORTHO05D000335 1.2e-12 77.0 63 57.1
CDE04G3411 Ceratophyllum demersum HOM05D000234 ORTHO05D000335 1.6e-12 76.6 63 57.1
Cc11_g12560 Coffea canephora HOM05D000234 ORTHO05D000335 1.6e-12 76.6 58 58.6
MBI14_g11599_MAGBIO Magnolia biondii HOM05D000234 ORTHO05D000335 2.1e-12 76.3 58 60.3
Nn3g17335 Nelumbo nucifera HOM05D000234 ORTHO05D000335 2.1e-12 76.3 58 62.1
Glyma.02G111600 Glycine max HOM05D000234 ORTHO05D000335 2.7e-12 75.9 58 58.6
RcHm_v2.0_Chr4g0439121 Rosa chinensis HOM05D000234 ORTHO05D000335 2.7e-12 75.9 58 60.3
Migut.L01242 Erythranthe guttata HOM05D000234 ORTHO05D000335 3.6e-12 75.5 59 61.0
Ah.02g129350 Amaranthus hybridus HOM05D000234 ORTHO05D000335 6.1e-12 74.7 58 58.6
FAN22G0561 Fragaria x ananassa HOM05D000234 ORTHO05D000335 6.1e-12 74.7 58 60.3
Medtr5g042590 Medicago truncatula HOM05D000234 ORTHO05D000335 8.0e-12 74.3 58 56.9
Peaxi162Scf00097g00118 Petunia axillaris HOM05D000234 ORTHO05D000335 1.4e-11 73.6 62 51.6
VMungo1215G0387 Vigna mungo HOM05D000234 ORTHO05D000335 1.4e-11 73.6 58 56.9
Nn7g38266 Nelumbo nucifera HOM05D000234 ORTHO05D019884 1.8e-11 73.2 58 58.6
Oeu021084.1 Olea europaea HOM05D000234 ORTHO05D000335 1.8e-11 73.2 60 53.3
TPR.G19945 Trifolium pratense HOM05D000234 ORTHO05D000335 1.8e-11 73.2 58 55.2
AUR62005852 Chenopodium quinoa HOM05D000234 ORTHO05D000335 2.3e-11 72.8 58 56.9
Nitab4.5_0000720g0070 Nicotiana tabacum HOM05D000234 ORTHO05D000335 2.3e-11 72.8 60 55.0
AUR62032845 Chenopodium quinoa HOM05D000234 ORTHO05D000335 5.2e-11 71.6 58 56.9
Lalb_Chr17g0340891 Lupinus albus HOM05D000234 ORTHO05D000335 5.2e-11 71.6 58 55.2
Solyc01g010970.3 Solanum lycopersicum HOM05D000234 ORTHO05D000335 5.2e-11 71.6 60 53.3
PGSC0003DMG400024301 Solanum tuberosum HOM05D000234 ORTHO05D000335 5.2e-11 71.6 60 53.3
CAN.G314.3 Capsicum annuum HOM05D000234 ORTHO05D000335 1.2e-10 70.5 60 51.7
Nitab4.5_0000141g0040 Nicotiana tabacum HOM05D000234 ORTHO05D000335 1.2e-10 70.5 60 53.3
SEGI_32962 Sequoiadendron giganteum HOM05D000234 ORTHO05D000335 1.5e-10 70.1 58 53.4
Sopen01g006840 Solanum pennellii HOM05D000234 ORTHO05D000335 1.5e-10 70.1 58 53.4
SGA_v2.0_scaffold16G07734 Striga asiatica HOM05D000234 ORTHO05D000335 1.5e-10 70.1 58 51.7
ECA234G3164 Erigeron canadensis HOM05D000234 ORTHO05D000335 2.0e-10 69.7 70 47.1
Eucgr.G02476 Eucalyptus grandis HOM05D000234 ORTHO05D000335 2.6e-10 69.3 58 53.4
Lj2g0015135 Lotus japonicus HOM05D000234 ORTHO05D000335 2.6e-10 69.3 58 53.4
EL10Ac6g13267 Beta vulgaris HOM05D000234 ORTHO05D000335 9.8e-10 67.4 57 49.1
unitig_22.g6503 Utricularia gibba HOM05D000234 ORTHO05D000335 1.7e-09 66.6 58 51.7
HPP92_013412 Vanilla planifolia HOM05D000234 ORTHO05D000335 2.2e-09 66.2 52 59.6
unitig_8.g3192 Utricularia gibba HOM05D000234 ORTHO05D000335 2.4e-08 62.8 59 47.5
ATR0730G082 Amborella trichopoda HOM05D000234 ORTHO05D000335 5.4e-08 61.6 60 53.3
GSVIVG01012529001 Vitis vinifera HOM05D000234 ORTHO05D000335 5.4e-08 61.6 43 65.1


User provided reference genes

Program Settings