Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 1.1e-91 340.1 185 100.0
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 8.9e-91 337.0 185 99.5
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 4.6e-87 324.7 185 97.3
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 7.6e-82 307.4 185 91.4
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 1.9e-77 292.7 187 82.9
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 2.9e-65 252.3 206 70.9
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 1.1e-64 250.4 208 70.7
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 2.4e-64 249.2 205 70.2
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 1.5e-61 240.0 203 67.0
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 2.5e-61 239.2 206 69.4
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 3.3e-61 238.8 205 66.3
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 9.6e-61 237.3 204 66.2
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 1.6e-60 236.5 208 67.8
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 2.1e-60 236.1 207 69.1
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 2.1e-60 236.1 207 69.1
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 7.1e-56 221.1 199 62.8
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.6e-55 219.9 196 62.2
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 3.5e-55 218.8 195 61.5
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 1.9e-53 213.0 183 66.1
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 1.9e-53 213.0 183 66.1
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 1.6e-52 209.9 209 60.8
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 2.1e-52 209.5 193 66.3
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 2.1e-52 209.5 193 66.3
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 1.8e-51 206.5 185 67.6
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 2.4e-51 206.1 204 59.3
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 5.3e-51 204.9 187 65.2
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 1.2e-47 193.7 180 65.0
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 3.0e-38 162.5 195 48.7
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 5.9e-34 148.3 225 42.7
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 5.9e-34 148.3 229 46.7
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 5.0e-33 145.2 210 48.1
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.9e-32 143.3 226 42.0
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 2.5e-32 142.9 225 45.3
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 2.5e-32 142.9 192 52.1
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 3.2e-32 142.5 223 48.9
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 4.2e-32 142.1 209 45.0
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 9.4e-32 141.0 161 47.2
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 9.4e-32 141.0 208 44.7
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 1.2e-31 140.6 198 44.4
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 2.7e-31 139.4 230 40.9
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 2.7e-31 139.4 230 40.9
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 2.7e-31 139.4 173 45.7
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 6.1e-31 138.3 192 42.7
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 1.0e-30 137.5 234 39.3
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 1.4e-30 137.1 218 43.6
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 1.4e-30 137.1 219 39.7
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 1.8e-30 136.7 234 39.7
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 3.0e-30 136.0 166 46.4
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 8.8e-30 134.4 208 46.6
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 8.8e-30 134.4 128 53.1
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 8.8e-30 134.4 205 44.4
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 1.1e-29 134.0 190 44.2
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.6e-29 132.9 209 43.5
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 2.6e-29 132.9 219 42.9
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 3.3e-29 132.5 219 41.6
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 4.4e-29 132.1 217 41.0
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 1.7e-28 130.2 177 44.1
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 1.7e-28 130.2 165 46.1
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.7e-28 130.2 202 43.6
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 3.7e-28 129.0 172 44.8
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 3.7e-28 129.0 214 48.6
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 3.7e-28 129.0 211 41.2
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 8.2e-28 127.9 222 41.4
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 8.2e-28 127.9 213 42.3
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 1.1e-27 127.5 230 44.8
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 2.4e-27 126.3 114 56.1
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 2.4e-27 126.3 166 50.0
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 3.1e-27 125.9 187 40.1
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 5.3e-27 125.2 173 46.2
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 5.3e-27 125.2 162 46.3
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 5.3e-27 125.2 178 46.6
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 7.0e-27 124.8 195 39.5
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 9.1e-27 124.4 97 61.9
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 9.1e-27 124.4 188 45.2
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 1.2e-26 124.0 205 42.9
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 4.5e-26 122.1 209 37.3
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 4.5e-26 122.1 158 45.6
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 4.5e-26 122.1 159 43.4
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 4.5e-26 122.1 98 61.2
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 5.9e-26 121.7 209 37.3
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 5.9e-26 121.7 148 52.7
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 5.9e-26 121.7 180 48.9
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 1.0e-25 120.9 83 66.3
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 1.0e-25 120.9 188 43.6
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 1.3e-25 120.6 105 54.3
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 1.3e-25 120.6 227 41.9
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.3e-25 120.6 201 42.3
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 1.3e-25 120.6 172 43.6
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 1.3e-25 120.6 217 38.7
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 2.9e-25 119.4 95 62.1
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 2.9e-25 119.4 190 43.2
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 3.8e-25 119.0 167 41.3
AT1G52270 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 6.5e-25 118.2 163 47.2
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 6.5e-25 118.2 181 46.4
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 6.5e-25 118.2 90 62.2
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 8.5e-25 117.9 227 44.5
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 8.5e-25 117.9 194 44.3
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 8.5e-25 117.9 227 37.9
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 8.5e-25 117.9 202 42.6
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 1.1e-24 117.5 227 44.9
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 1.5e-24 117.1 224 37.1
A01p19730 Brassica napus HOM05D004801 ORTHO05D005747 1.9e-24 116.7 85 82.4
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 1.9e-24 116.7 97 60.8
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 2.5e-24 116.3 89 62.9
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.5e-24 116.3 77 68.8
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.5e-24 116.3 209 44.0
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.5e-24 116.3 213 40.4
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 2.5e-24 116.3 188 44.1
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 3.2e-24 115.9 219 42.0
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 7.2e-24 114.8 211 38.4
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 7.2e-24 114.8 189 47.1
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 7.2e-24 114.8 100 54.0
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 7.2e-24 114.8 220 43.6
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 9.4e-24 114.4 91 61.5
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.2e-23 114.0 77 67.5
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 2.1e-23 113.2 96 57.3
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 2.1e-23 113.2 210 37.1
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 4.7e-23 112.1 219 37.4
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 6.1e-23 111.7 221 42.1
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 1.0e-22 110.9 111 54.1
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 1.8e-22 110.2 199 37.7
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 1.8e-22 110.2 166 41.6
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 3.0e-22 109.4 235 34.0
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 3.0e-22 109.4 86 60.5
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 8.8e-22 107.8 86 59.3
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 8.8e-22 107.8 106 53.8
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 8.8e-22 107.8 220 39.1
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 1.5e-21 107.1 100 52.0
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 3.3e-21 105.9 78 65.4
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 3.3e-21 105.9 164 42.1
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 4.4e-21 105.5 106 52.8
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 4.8e-20 102.1 204 35.3
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 1.4e-19 100.5 88 56.8
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 4.1e-19 99.0 99 53.5
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 1.2e-18 97.4 112 54.5
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 2.0e-18 96.7 77 58.4
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 3.5e-18 95.9 98 45.9
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 4.5e-18 95.5 101 44.6
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.0e-17 94.4 68 63.2
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 5.5e-16 88.6 121 52.9
BcaC08g44096 Brassica carinata HOM05D004801 ORTHO05D005747 2.1e-15 86.7 81 63.0
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 8.8e-14 81.3 162 35.8
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 8.8e-14 81.3 104 43.3
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 1.5e-13 80.5 93 45.2
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 1.5e-13 80.5 114 48.2
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 2.0e-13 80.1 87 48.3
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 5.7e-13 78.6 92 54.3
BolC3t18785H Brassica oleracea HOM05D004801 ORTHO05D004735 1.7e-12 77.0 114 47.4
BcaC03g17563 Brassica carinata HOM05D000889 ORTHO05D027509 1.4e-11 73.9 65 66.2
BolC2t11588H Brassica oleracea HOM05D004801 ORTHO05D005747 7.7e-10 68.2 72 61.1


User provided reference genes

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