Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 3.4e-172 608.2 301 100.0
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 1.6e-161 572.8 302 94.0
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 5.6e-159 564.3 302 93.0
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 5.6e-159 564.3 302 93.4
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 2.1e-150 535.8 302 85.1
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 6.2e-150 534.3 299 86.0
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 8.1e-150 533.9 301 84.7
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 1.3e-147 526.6 298 84.6
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 1.7e-147 526.2 298 84.6
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 3.2e-146 521.9 301 83.4
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 3.2e-146 521.9 301 83.4
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 3.2e-146 521.9 301 83.4
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.4e-141 506.5 330 75.8
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 5.3e-141 504.6 320 76.9
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 2.4e-138 495.7 330 73.9
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 7.1e-138 494.2 330 73.3
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 3.3e-135 485.3 305 77.7
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.0e-128 463.8 299 73.9
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 2.3e-128 462.6 302 72.8
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 3.0e-128 462.2 302 73.8
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 9.6e-127 457.2 303 73.9
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 2.1e-126 456.1 294 72.1
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 9.0e-125 450.7 304 71.4
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.5e-124 449.9 296 73.0
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 1.5e-119 433.3 290 73.8
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 1.3e-118 430.3 301 67.8
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 1.6e-118 429.9 295 68.8
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 1.6e-118 429.9 306 67.0
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 3.7e-118 428.7 297 68.7
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 6.3e-118 427.9 288 71.2
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 6.3e-118 427.9 290 72.1
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 9.0e-117 424.1 295 67.8
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 2.6e-116 422.5 280 72.1
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 1.3e-115 420.2 294 67.3
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 8.5e-115 417.5 290 72.1
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 8.5e-115 417.5 290 72.1
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 8.5e-115 417.5 290 72.1
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 8.5e-115 417.5 290 71.7
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 1.9e-114 416.4 294 67.0
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 1.9e-114 416.4 303 69.0
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 2.5e-114 416.0 290 71.7
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 5.5e-114 414.8 304 65.8
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.6e-113 413.3 309 65.7
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.6e-113 413.3 309 65.7
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 1.6e-113 413.3 300 63.7
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 1.6e-113 413.3 299 66.6
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 4.6e-113 411.8 309 64.1
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 4.6e-113 411.8 309 64.4
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 6.1e-113 411.4 290 71.0
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 6.1e-113 411.4 309 64.7
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 6.1e-113 411.4 306 65.4
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 3.9e-112 408.7 283 67.8
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 6.7e-112 407.9 263 70.0
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 1.1e-111 407.1 312 62.8
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 1.1e-111 407.1 307 65.8
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 9.7e-111 404.1 311 64.0
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 9.7e-111 404.1 281 66.5
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 9.7e-111 404.1 309 64.1
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 1.7e-110 403.3 314 62.1
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 1.7e-110 403.3 314 62.1
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 1.7e-110 403.3 314 62.1
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 2.8e-110 402.5 283 64.7
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 2.8e-110 402.5 304 65.8
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 4.8e-110 401.7 314 62.7
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 6.3e-110 401.4 321 60.7
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 1.8e-109 399.8 302 64.2
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 1.8e-109 399.8 303 62.4
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 4.1e-109 398.7 257 69.6
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 4.1e-109 398.7 314 62.1
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 4.1e-109 398.7 315 62.2
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 1.2e-108 397.1 270 67.8
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 2.0e-108 396.4 257 68.9
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 3.4e-108 395.6 273 68.1
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 4.5e-108 395.2 307 60.9
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 5.9e-108 394.8 287 64.1
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 1.3e-107 393.7 247 74.1
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.7e-107 393.3 228 78.9
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 2.9e-107 392.5 302 64.2
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 5.0e-107 391.7 297 63.3
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 8.5e-107 391.0 307 60.9
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.1e-106 390.6 293 63.1
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 1.1e-106 390.6 235 76.2
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 1.1e-106 390.6 281 64.4
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 1.9e-106 389.8 240 73.3
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 4.2e-106 388.7 307 62.9
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 4.2e-106 388.7 237 71.7
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 7.2e-106 387.9 307 63.5
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 9.4e-106 387.5 247 69.2
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 1.2e-105 387.1 306 60.8
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 1.2e-105 387.1 239 74.5
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 1.6e-105 386.7 300 61.7
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 1.6e-105 386.7 306 60.1
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 3.6e-105 385.6 288 64.6
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 4.7e-105 385.2 301 60.8
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 6.1e-105 384.8 283 63.6
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 1.8e-104 383.3 301 61.5
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 3.9e-104 382.1 303 59.7
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 6.7e-104 381.3 298 59.4
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 2.0e-103 379.8 308 59.1
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 4.4e-103 378.6 228 75.9
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 4.4e-103 378.6 252 68.7
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 3.7e-102 375.6 236 70.3
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 6.3e-102 374.8 237 69.6
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 6.3e-102 374.8 259 66.8
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 6.9e-101 371.3 296 61.8
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 6.9e-101 371.3 230 73.0
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 4.5e-100 368.6 285 58.6
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 5.9e-100 368.2 254 66.1
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 7.7e-100 367.9 305 61.0
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 2.9e-99 365.9 306 59.2
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 2.5e-98 362.8 236 65.7
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 4.2e-98 362.1 307 59.0
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 2.7e-97 359.4 236 64.4
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 8.0e-97 357.8 236 63.6
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 1.0e-96 357.5 252 64.7
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 3.0e-96 355.9 307 56.0
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 3.3e-95 352.4 221 71.5
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 5.7e-95 351.7 229 67.7
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 9.7e-95 350.9 243 65.8
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 2.8e-94 349.4 241 64.3
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 2.2e-91 339.7 193 80.3
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 3.8e-91 339.0 234 66.7
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 5.5e-90 335.1 218 67.9
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.6e-89 333.6 309 51.1
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 2.3e-88 329.7 225 66.7
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 2.3e-88 329.7 224 66.5
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 3.0e-88 329.3 227 63.4
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 2.0e-87 326.6 244 61.9
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 5.7e-87 325.1 211 70.1
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 1.7e-86 323.6 270 55.9
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 2.8e-86 322.8 232 61.2
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 4.8e-86 322.0 203 75.4
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 4.8e-86 322.0 198 71.2
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 4.5e-84 315.5 257 57.2
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 8.5e-83 311.2 248 53.2
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 1.6e-81 307.0 195 71.8
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 1.2e-79 300.8 298 50.7
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 2.2e-78 296.6 233 57.5
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 4.8e-78 295.4 230 60.4
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 1.2e-76 290.8 280 53.9
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 7.7e-76 288.1 236 61.0
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 1.8e-72 276.9 229 55.5
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 3.7e-70 269.2 251 52.2
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 4.1e-69 265.8 219 55.3
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 9.2e-69 264.6 251 50.2
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 1.2e-68 264.2 228 52.6
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 4.5e-68 262.3 230 53.5
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 1.7e-67 260.4 232 53.9
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 3.6e-65 252.7 217 53.5
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 3.6e-65 252.7 154 71.4
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 4.7e-65 252.3 246 52.0
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 5.2e-64 248.8 233 50.2
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 1.2e-63 247.7 237 48.9
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.3e-62 244.2 231 51.9
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 2.4e-61 240.0 212 55.7
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.6e-60 237.3 230 49.1
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 6.6e-59 231.9 239 46.4
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 4.7e-57 225.7 182 59.9
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.1e-56 224.6 239 46.4
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 1.4e-56 224.2 250 45.2
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 2.6e-55 219.9 222 49.1
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 7.5e-55 218.4 245 44.5
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 8.3e-54 214.9 150 62.0
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 1.6e-52 210.7 197 51.3
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 4.6e-52 209.1 130 73.1
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 3.0e-51 206.5 221 46.2
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 3.3e-50 203.0 234 44.9
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 2.8e-49 199.9 153 60.1
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 1.8e-48 197.2 316 38.6
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 9.9e-47 191.4 152 59.2
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.9e-42 177.2 101 76.2
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 5.2e-40 169.1 109 70.6
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 2.0e-39 167.2 87 87.4
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 2.0e-31 140.6 95 68.4
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 1.0e-19 101.7 49 89.8
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 3.0e-19 100.1 102 53.9
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 5.5e-13 79.3 74 51.4
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 9.0e-08 62.0 43 62.8


User provided reference genes

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