Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p06260 Brassica napus HOM05D002471 ORTHO05D011298 4.6e-149 531.2 264 100.0
BolC1t00624H Brassica oleracea HOM05D002471 ORTHO05D011298 1.2e-91 340.5 188 92.6
BcaC09g52060 Brassica carinata HOM05D002471 ORTHO05D011298 2.3e-79 299.7 209 75.1
A01p05680 Brassica napus HOM05D002471 ORTHO05D011298 2.3e-79 299.7 205 75.6
BraA01t00538Z Brassica rapa HOM05D002471 ORTHO05D011298 2.3e-79 299.7 205 75.6
Thhalv10020048m.g Eutrema salsugineum HOM05D002471 ORTHO05D011298 3.7e-74 282.3 190 76.3
Carub.0006s2275 Capsella rubella HOM05D002471 ORTHO05D011298 3.6e-61 239.2 205 63.4
CARHR081300 Cardamine hirsuta HOM05D002471 ORTHO05D011298 3.4e-51 206.1 203 54.7
CARHR240640 Cardamine hirsuta HOM05D002471 ORTHO05D011298 3.3e-46 189.5 208 54.3
Carub.0007s0787 Capsella rubella HOM05D002471 ORTHO05D011298 2.8e-45 186.4 209 51.7
AT4G32670 Arabidopsis thaliana HOM05D002471 ORTHO05D011298 9.9e-43 177.9 211 48.8
AL7G19070 Arabidopsis lyrata HOM05D002471 ORTHO05D011298 6.4e-42 175.3 207 49.3
BraA05t22859Z Brassica rapa HOM05D002471 ORTHO05D011298 7.8e-40 168.3 188 50.5
A05p41380 Brassica napus HOM05D002471 ORTHO05D011298 1.7e-39 167.2 188 50.5
AL3G17760 Arabidopsis lyrata HOM05D002471 ORTHO05D011298 3.9e-39 166.0 206 49.0
BraA01t00537Z Brassica rapa HOM05D002471 ORTHO05D011298 6.6e-39 165.2 209 48.3
C01p06240 Brassica napus HOM05D002471 ORTHO05D011298 1.6e-37 160.6 190 47.9
Thhalv10022280m.g Eutrema salsugineum HOM05D002471 ORTHO05D011298 1.6e-37 160.6 197 48.7
C05p60600 Brassica napus HOM05D002471 ORTHO05D011298 6.2e-37 158.7 195 49.2
BolC5t34717H Brassica oleracea HOM05D002471 ORTHO05D011298 6.2e-37 158.7 195 49.2
BcaC09g52061 Brassica carinata HOM05D002471 ORTHO05D011298 9.0e-36 154.8 195 46.7
A01p05670 Brassica napus HOM05D002471 ORTHO05D011298 9.9e-35 151.4 212 43.9
Aa31LG2G16950 Aethionema arabicum HOM05D002471 ORTHO05D011298 8.4e-34 148.3 207 45.4
BraA03t12659Z Brassica rapa HOM05D002471 ORTHO05D011298 1.1e-33 147.9 193 48.2
A03p34780 Brassica napus HOM05D002471 ORTHO05D011298 1.4e-33 147.5 193 48.2
C05p60590 Brassica napus HOM05D002471 ORTHO05D011298 1.9e-33 147.1 230 41.3
CARHR081240 Cardamine hirsuta HOM05D002471 ORTHO05D011298 1.5e-27 127.5 162 51.9
THA.LOC104827264 Tarenaya hassleriana HOM05D002471 ORTHO05D011298 1.6e-24 117.5 198 39.4
BraA05t22586Z Brassica rapa HOM05D002471 ORTHO05D011298 2.3e-23 113.6 185 42.2
A01p03350 Brassica napus HOM05D002471 ORTHO05D098226 3.2e-17 93.2 196 38.3
BolC3t16507H Brassica oleracea HOM05D002471 ORTHO05D011298 7.1e-17 92.0 177 36.7
C03p42340 Brassica napus HOM05D002471 ORTHO05D011298 2.6e-11 73.6 89 46.1
CDE04G3492 Ceratophyllum demersum HOM05D002471 ORTHO05D003712 6.5e-10 68.9 205 26.8
HPP92_000199 Vanilla planifolia HOM05D002471 ORTHO05D003712 1.4e-09 67.8 213 31.9
Zm00001eb275450 Zea mays HOM05D002471 ORTHO05D003712 4.2e-09 66.2 228 25.4
Zm00001eb387290 Zea mays HOM05D002471 ORTHO05D003712 5.5e-09 65.9 214 26.6
FAN20G0068 Fragaria x ananassa HOM05D002471 ORTHO05D003712 1.6e-08 64.3 202 27.2
FvH4_2g05730 Fragaria vesca HOM05D002471 ORTHO05D003712 2.1e-08 63.9 202 27.2
Ca_18711_v3 Cicer arietinum L. HOM05D002471 ORTHO05D003712 6.1e-08 62.4 184 27.2
Lalb_Chr05g0219311 Lupinus albus HOM05D002471 ORTHO05D003712 6.1e-08 62.4 187 26.7
Nn1g04785 Nelumbo nucifera HOM05D002471 ORTHO05D003712 6.1e-08 62.4 193 26.9
PGR142G0507 Punica granatum HOM05D002471 ORTHO05D003712 6.1e-08 62.4 188 26.1
Sc14g0001810 Simmondsia chinensis HOM05D002471 ORTHO05D003712 6.1e-08 62.4 183 28.4
Potri.001G304100 Populus trichocarpa HOM05D002471 ORTHO05D003712 7.9e-08 62.0 196 26.0
CANSAT01G1155 Cannabis sativa HOM05D002471 ORTHO05D003712 1.0e-07 61.6 164 28.7
MELO3C018461.2 Cucumis melo HOM05D002471 ORTHO05D003712 1.0e-07 61.6 192 27.6
Manes.07G072800 Manihot esculenta HOM05D002471 ORTHO05D003712 1.0e-07 61.6 201 25.4
THA.LOC104807837 Tarenaya hassleriana HOM05D002471 ORTHO05D003712 1.0e-07 61.6 191 26.2
FAN27G3397 Fragaria x ananassa HOM05D002471 ORTHO05D003712 1.3e-07 61.2 202 26.7
Psat7g126400 Pisum sativum HOM05D002471 ORTHO05D003712 1.3e-07 61.2 184 26.6
CsaV3_7G008470 Cucumis sativus L. HOM05D002471 ORTHO05D003712 1.8e-07 60.8 187 26.7
FAN24G2894 Fragaria x ananassa HOM05D002471 ORTHO05D003712 1.8e-07 60.8 202 26.7
ClCG02G006070 Citrullus lanatus HOM05D002471 ORTHO05D003712 2.3e-07 60.5 192 27.1
Eucgr.I01130 Eucalyptus grandis HOM05D002471 ORTHO05D003712 2.3e-07 60.5 174 24.1
Sc14g0001830 Simmondsia chinensis HOM05D002471 ORTHO05D003712 2.3e-07 60.5 189 27.0
AagrBONN_evm.TU.Sc2ySwM_228.2821 Anthoceros agrestis HOM05D002471 ORTHO05D003712 3.0e-07 60.1 188 28.2
CiPaw.06G171300 Carya illinoinensis HOM05D002471 ORTHO05D003712 3.9e-07 59.7 189 25.9
FAN15G2265 Fragaria x ananassa HOM05D002471 ORTHO05D003712 3.9e-07 59.7 202 26.2
Medtr4g085550 Medicago truncatula HOM05D002471 ORTHO05D003712 3.9e-07 59.7 184 27.7
Duzib052G0365 Durio zibethinus HOM05D002471 ORTHO05D003712 5.1e-07 59.3 202 25.2
HanXRQChr16g0515001 Helianthus annuus HOM05D002471 ORTHO05D003712 5.1e-07 59.3 193 24.4
Prupe.8G129300 Prunus persica HOM05D002471 ORTHO05D003712 5.1e-07 59.3 202 25.7
Glyma.07G215200 Glycine max HOM05D002471 ORTHO05D003712 6.7e-07 58.9 188 25.5
HanXRQChr03g0070141 Helianthus annuus HOM05D002471 ORTHO05D003712 6.7e-07 58.9 193 24.4
vmacro19516 Vaccinium macrocarpon HOM05D002471 ORTHO05D003712 6.7e-07 58.9 193 26.4
ATR0762G060 Amborella trichopoda HOM05D002471 ORTHO05D003712 8.7e-07 58.5 190 25.3
Lj4g0010035 Lotus japonicus HOM05D002471 ORTHO05D003712 8.7e-07 58.5 189 25.4
TAR628G0580 Trochodendron aralioides HOM05D002471 ORTHO05D003712 8.7e-07 58.5 192 25.0
Actinidia17877 Actinidia chinensis HOM05D002471 ORTHO05D003712 1.1e-06 58.2 188 25.5
ECA234G3000 Erigeron canadensis HOM05D002471 ORTHO05D003712 1.1e-06 58.2 194 23.7
Migut.B00367 Erythranthe guttata HOM05D002471 ORTHO05D003712 1.1e-06 58.2 189 25.4
Gorai.005G236600 Gossypium raimondii HOM05D002471 ORTHO05D003712 1.1e-06 58.2 203 27.6
MD00G1138200 Malus domestica HOM05D002471 ORTHO05D003712 1.1e-06 58.2 202 26.2
RcHm_v2.0_Chr6g0256621 Rosa chinensis HOM05D002471 ORTHO05D003712 1.1e-06 58.2 203 27.6
Actinidia00425 Actinidia chinensis HOM05D002471 ORTHO05D003712 1.5e-06 57.8 187 27.8
Aqoxy5G01185 Aquilegia oxysepala HOM05D002471 ORTHO05D003712 1.5e-06 57.8 175 24.0
Os06g0639100 Oryza sativa ssp. japonica HOM05D002471 ORTHO05D003712 1.5e-06 57.8 216 26.4
Phvul.003G047600 Phaseolus vulgaris HOM05D002471 ORTHO05D003712 1.5e-06 57.8 188 26.1
TPR.G12707 Trifolium pratense HOM05D002471 ORTHO05D003712 1.5e-06 57.8 184 26.1
Atru.chr5.2641 Acer truncatum HOM05D002471 ORTHO05D003712 1.9e-06 57.4 185 24.9
Atru.chr5.2647 Acer truncatum HOM05D002471 ORTHO05D003712 1.9e-06 57.4 185 24.9
MSTRG.16728 Avicennia marina HOM05D002471 ORTHO05D003712 1.9e-06 57.4 122 30.3
Dinv42173 Davidia involucrata HOM05D002471 ORTHO05D003712 1.9e-06 57.4 187 24.1
Gohir.D02G208600 Gossypium hirsutum HOM05D002471 ORTHO05D003712 2.5e-06 57.0 202 25.7
SGA_v2.0_scaffold90G27611 Striga asiatica HOM05D002471 ORTHO05D003712 2.5e-06 57.0 183 24.0
Duzib248G1549 Durio zibethinus HOM05D002471 ORTHO05D003712 3.3e-06 56.6 202 25.2
Solyc01g107880.3 Solanum lycopersicum HOM05D002471 ORTHO05D003712 3.3e-06 56.6 185 23.8
Sopen01g050050 Solanum pennellii HOM05D002471 ORTHO05D003712 3.3e-06 56.6 185 23.8
PGSC0003DMG400025880 Solanum tuberosum HOM05D002471 ORTHO05D003712 3.3e-06 56.6 185 23.8
Manes.10G078500 Manihot esculenta HOM05D002471 ORTHO05D003712 4.3e-06 56.2 202 22.3
Nn5g30358 Nelumbo nucifera HOM05D002471 ORTHO05D003712 4.3e-06 56.2 192 26.0
Cfa004547 Carpinus fangiana HOM05D002471 ORTHO05D003712 5.7e-06 55.8 202 24.3
HanXRQChr09g0250641 Helianthus annuus HOM05D002471 ORTHO05D003712 5.7e-06 55.8 186 23.1
Lsat_1_v5_gn_0_4161 Lactuca sativa HOM05D002471 ORTHO05D003712 5.7e-06 55.8 190 23.7
Lalb_Chr16g0384861 Lupinus albus HOM05D002471 ORTHO05D003712 5.7e-06 55.8 193 22.8
MD05G1085000 Malus domestica HOM05D002471 ORTHO05D003712 5.7e-06 55.8 202 26.7
MSTRG.20171 Avicennia marina HOM05D002471 ORTHO05D003712 7.4e-06 55.5 119 30.3
BcaC05g29375 Brassica carinata HOM05D002471 ORTHO05D020045 7.4e-06 55.5 52 50.0
Haze_10112 Corylus avellana HOM05D002471 ORTHO05D003712 7.4e-06 55.5 202 24.3
VMungo0251G3159 Vigna mungo HOM05D002471 ORTHO05D003712 7.4e-06 55.5 188 26.1
GSVIVG01031710001 Vitis vinifera HOM05D002471 ORTHO05D003712 7.4e-06 55.5 204 25.5
CAN.G1231.31 Capsicum annuum HOM05D002471 ORTHO05D003712 9.7e-06 55.1 185 24.9
DCAR_022010 Daucus carota HOM05D002471 ORTHO05D003712 9.7e-06 55.1 210 25.7
Gohir.A03G187800 Gossypium hirsutum HOM05D002471 ORTHO05D003712 9.7e-06 55.1 206 26.2
Lj9C356G4 Lonicera japonica HOM05D002471 ORTHO05D003712 9.7e-06 55.1 186 26.9


User provided reference genes

Program Settings