Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 3.5e-120 434.9 205 100.0
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 1.5e-110 402.9 200 95.5
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 1.5e-110 402.9 200 95.5
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 1.5e-110 402.9 200 95.5
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 1.5e-110 402.9 200 95.5
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 1.3e-106 389.8 200 93.5
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.7e-106 389.4 200 93.5
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.7e-106 389.4 200 93.5
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 4.6e-104 381.3 205 90.7
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 5.6e-102 374.4 243 77.8
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.1e-100 370.2 198 89.4
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 1.3e-98 363.2 198 87.4
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 6.4e-98 360.9 198 88.9
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 5.4e-97 357.8 198 86.9
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 2.7e-96 355.5 204 85.3
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 1.0e-95 353.6 190 88.4
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 6.6e-95 350.9 200 85.0
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 1.1e-92 343.6 218 77.5
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 1.7e-90 336.3 198 81.8
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 8.4e-90 334.0 170 93.5
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.1e-89 333.6 228 73.7
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 7.1e-89 330.9 254 67.7
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 3.9e-87 325.1 175 90.3
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.1e-86 323.6 227 72.7
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 3.6e-85 318.5 170 90.0
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 1.4e-84 316.6 175 87.4
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.8e-84 316.2 219 71.2
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.6e-83 312.4 241 67.2
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.4e-81 306.6 170 85.9
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.4e-81 306.6 170 85.9
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 3.2e-81 305.4 148 96.6
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 6.0e-80 301.2 170 85.9
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 6.0e-80 301.2 170 85.9
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 6.0e-80 301.2 170 85.9
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 7.9e-80 300.8 296 55.1
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 1.3e-79 300.1 170 85.3
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 1.8e-79 299.7 160 90.0
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 1.5e-78 296.6 170 84.1
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 1.9e-78 296.2 173 84.4
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 2.5e-78 295.8 169 84.6
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 2.5e-78 295.8 169 84.6
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 2.5e-78 295.8 169 84.6
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 6.2e-77 291.2 317 51.7
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 1.5e-75 286.6 170 81.2
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 1.7e-74 283.1 148 90.5
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 8.4e-74 280.8 170 81.2
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.1e-73 280.4 275 56.7
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 1.1e-73 280.4 153 86.9
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 1.9e-73 279.6 175 79.4
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 2.4e-73 279.3 170 80.6
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 1.0e-71 273.9 147 88.4
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 1.3e-71 273.5 148 87.2
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.1e-71 271.6 188 72.3
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 6.7e-71 271.2 170 77.6
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 8.7e-71 270.8 163 82.2
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 1.8e-68 263.1 147 84.4
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 2.4e-68 262.7 172 76.2
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 2.4e-68 262.7 172 76.2
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 1.1e-65 253.8 150 82.0
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 1.3e-63 246.9 236 55.1
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 1.9e-62 243.0 124 90.3
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 3.3e-62 242.3 146 80.8
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 1.3e-61 240.4 248 55.6
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 2.2e-58 229.6 173 70.5
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 1.9e-57 226.5 135 78.5
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 3.0e-55 219.2 139 79.1
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.0e-51 206.5 109 84.4
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.7e-47 191.4 181 56.4
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 9.7e-46 187.6 108 83.3
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 4.8e-45 185.3 185 58.9
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 4.8e-45 185.3 185 58.9
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 6.1e-40 168.3 111 77.5
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 3.3e-30 136.0 121 60.3
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 3.1e-28 129.4 125 54.4
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 5.3e-28 128.6 72 87.5
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 1.3e-26 124.0 108 60.2
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.2e-21 106.7 111 52.3
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.3e-15 86.7 54 74.1
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 1.2e-14 84.3 51 74.5
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 7.5e-14 81.6 64 65.6
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 7.0e-12 75.1 34 100.0
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 7.0e-12 75.1 34 100.0
Prupe.5G026600 Prunus persica HOM05D003430 ORTHO05D004809 7.0e-12 75.1 68 57.4
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 7.0e-12 75.1 34 100.0
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 1.6e-11 73.9 53 66.0
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 2.7e-11 73.2 34 94.1
Nitab4.5_0000684g0110 Nicotiana tabacum HOM05D003430 ORTHO05D015169 7.8e-11 71.6 53 62.3
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 1.0e-10 71.2 34 91.2
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 1.0e-10 71.2 34 91.2
Nitab4.5_0000172g1190 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.0e-10 71.2 40 85.0
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 2.3e-10 70.1 32 96.9
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 6.6e-10 68.6 32 93.8
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 6.6e-10 68.6 32 93.8
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 8.6e-10 68.2 44 68.2
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 1.1e-09 67.8 32 93.8
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 2.5e-09 66.6 47 66.0
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 2.5e-09 66.6 40 77.5
Mapoly0017s0010 Marchantia polymorpha HOM05D003430 ORTHO05D004809 3.3e-09 66.2 54 64.8
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 4.3e-09 65.9 32 93.8
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 4.3e-09 65.9 32 93.8
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 4.3e-09 65.9 32 93.8
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 4.3e-09 65.9 32 93.8
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 9.5e-09 64.7 32 90.6
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 9.5e-09 64.7 32 90.6
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 9.5e-09 64.7 32 93.8
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 9.5e-09 64.7 32 90.6
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 1.6e-08 63.9 32 93.8
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.6e-08 62.8 32 90.6
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 3.6e-08 62.8 31 90.3
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 4.7e-08 62.4 40 70.0
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 4.7e-08 62.4 32 87.5
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 4.7e-08 62.4 32 87.5
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.7e-08 62.4 32 87.5
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 4.7e-08 62.4 31 90.3
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 6.1e-08 62.0 39 71.8
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 6.1e-08 62.0 34 79.4
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 6.1e-08 62.0 34 79.4
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 6.1e-08 62.0 34 79.4
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 6.1e-08 62.0 34 79.4
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 6.1e-08 62.0 32 90.6
SalBow1G2589 Salvia bowleyana HOM05D003430 ORTHO05D004809 8.0e-08 61.6 33 87.9
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 1.4e-07 60.8 32 90.6
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.8e-07 60.5 32 81.2
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.8e-07 60.5 32 81.2
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 1.8e-07 60.5 32 81.2
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.8e-07 60.5 32 81.2
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 1.8e-07 60.5 32 81.2
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 6.8e-07 58.5 34 76.5
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 8.9e-07 58.2 30 86.7
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 8.9e-07 58.2 34 76.5
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 8.9e-07 58.2 34 76.5
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 8.9e-07 58.2 34 76.5
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 8.9e-07 58.2 34 76.5
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 8.9e-07 58.2 34 76.5
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 8.9e-07 58.2 34 76.5
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 1.5e-06 57.4 32 78.1
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.5e-06 57.4 27 92.6


User provided reference genes

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