Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC29t60624H Brassica oleracea HOM05D004182 ORTHO05D007321 1.1e-66 256.5 132 100.0
BolSC35t60684H Brassica oleracea HOM05D004182 ORTHO05D007321 1.7e-59 232.6 126 95.2
BolSC46t60966H Brassica oleracea HOM05D004182 ORTHO05D007321 1.7e-59 232.6 126 95.2
BolSC49t61134H Brassica oleracea HOM05D004182 ORTHO05D007321 1.7e-59 232.6 126 95.2
BraSC138t45528Z Brassica rapa HOM05D004182 ORTHO05D007321 1.7e-59 232.6 126 95.2
BraSC59t46534Z Brassica rapa HOM05D004182 ORTHO05D007321 1.7e-59 232.6 126 95.2
BolSC29t60540H Brassica oleracea HOM05D004182 ORTHO05D007321 2.1e-57 225.7 126 92.9
BolSC29t60554H Brassica oleracea HOM05D004182 ORTHO05D007321 9.0e-53 210.3 128 88.3
C09p40270 Brassica napus HOM05D004182 ORTHO05D007321 3.8e-51 204.9 126 85.7
Ca_24280_v3 Cicer arietinum L. HOM05D004182 ORTHO05D007321 7.1e-50 200.7 126 85.7
BraSC58t46455Z Brassica rapa HOM05D004182 ORTHO05D007321 2.3e-48 195.7 123 87.0
BraSC25t45918Z Brassica rapa HOM05D004182 ORTHO05D007321 9.6e-47 190.3 102 94.1
BolSC45t60917H Brassica oleracea HOM05D004182 ORTHO05D007321 2.1e-46 189.1 103 93.2
BolSC44t60830H Brassica oleracea HOM05D004182 ORTHO05D007321 4.8e-46 188.0 103 92.2
BolSC49t61151H Brassica oleracea HOM05D004182 ORTHO05D007321 5.3e-45 184.5 104 92.3
arahy.Tifrunner.gnm1.ann1.04MME8 Arachis hypogaea HOM05D004182 ORTHO05D007321 3.4e-44 181.8 106 90.6
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 4.5e-44 181.4 106 90.6
arahy.Tifrunner.gnm1.ann1.MI7UCB Arachis hypogaea HOM05D004182 ORTHO05D007321 4.9e-43 177.9 106 89.6
VMungo0942G0003 Vigna mungo HOM05D004182 ORTHO05D007321 1.4e-42 176.4 105 89.5
VMungo0720G0997 Vigna mungo HOM05D004182 ORTHO05D007321 4.2e-42 174.9 105 88.6
BraSC179t45780Z Brassica rapa HOM05D004182 ORTHO05D007321 1.6e-41 172.9 91 98.9
Hma1.2p1_0043F.1_g025830 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 1.3e-40 169.9 106 83.0
LjContig00318g0013893 Lotus japonicus HOM05D004182 ORTHO05D007321 2.3e-40 169.1 108 83.3
Hma1.2p1_0594F.1_g185812 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 1.6e-38 162.9 106 83.0
Nn029s41584 Nelumbo nucifera HOM05D004182 ORTHO05D007321 9.0e-37 157.1 96 88.5
PGSC0003DMG400027965 Solanum tuberosum HOM05D004182 ORTHO05D007321 2.0e-36 156.0 96 87.5
PGSC0003DMG400041917 Solanum tuberosum HOM05D004182 ORTHO05D007321 2.0e-36 156.0 96 87.5
Nn212s45203 Nelumbo nucifera HOM05D004182 ORTHO05D007321 3.0e-32 142.1 96 83.3
Nn264s45947 Nelumbo nucifera HOM05D004182 ORTHO05D007321 3.0e-32 142.1 96 83.3
Nn304s46229 Nelumbo nucifera HOM05D004182 ORTHO05D007321 3.0e-32 142.1 96 83.3
arahy.Tifrunner.gnm1.ann1.GMF9U8 Arachis hypogaea HOM05D004182 ORTHO05D007321 3.9e-32 141.7 98 79.6
BolSC35t60712H Brassica oleracea HOM05D004182 ORTHO05D007321 5.1e-32 141.4 74 91.9
BraSC103t45421Z Brassica rapa HOM05D004182 ORTHO05D007321 5.1e-32 141.4 74 91.9
Sopen02g002730 Solanum pennellii HOM05D004182 ORTHO05D007321 9.7e-31 137.1 120 67.5
BolSC29t60499H Brassica oleracea HOM05D004182 ORTHO05D007321 2.2e-30 136.0 72 100.0
BolSC47t61059H Brassica oleracea HOM05D004182 ORTHO05D007321 1.1e-29 133.7 71 100.0
BcaC04g20782 Brassica carinata HOM05D004182 ORTHO05D007321 3.4e-28 128.6 68 100.0
CARHR282390 Cardamine hirsuta HOM05D004182 ORTHO05D007321 3.4e-28 128.6 68 100.0
CARHR282490 Cardamine hirsuta HOM05D004182 ORTHO05D007321 3.4e-28 128.6 68 100.0
BraSC58t46465Z Brassica rapa HOM05D004182 ORTHO05D007321 2.2e-27 125.9 81 80.2
BraSC59t46543Z Brassica rapa HOM05D004182 ORTHO05D007321 6.5e-27 124.4 84 77.4
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 2.5e-26 122.5 179 48.6
BraSC143t45651Z Brassica rapa HOM05D004182 ORTHO05D007321 2.7e-25 119.0 90 70.0
Gohir.1Z051066 Gossypium hirsutum HOM05D004182 ORTHO05D007321 6.1e-25 117.9 68 92.6
Gohir.A04G039255 Gossypium hirsutum HOM05D004182 ORTHO05D007321 6.1e-25 117.9 68 92.6
Gohir.1Z049982 Gossypium hirsutum HOM05D004182 ORTHO05D007321 7.9e-25 117.5 68 91.2
Sopen06g015050 Solanum pennellii HOM05D004182 ORTHO05D007321 2.3e-24 115.9 68 92.6
Sopen09g020810 Solanum pennellii HOM05D004182 ORTHO05D007321 2.3e-24 115.9 68 92.6
Nn064s42221 Nelumbo nucifera HOM05D004182 ORTHO05D007321 3.9e-24 115.2 68 92.6
Nn349s46475 Nelumbo nucifera HOM05D004182 ORTHO05D007321 3.9e-24 115.2 68 92.6
Nn403s46571 Nelumbo nucifera HOM05D004182 ORTHO05D007321 3.9e-24 115.2 68 92.6
Nn4g25379 Nelumbo nucifera HOM05D004182 ORTHO05D007321 3.9e-24 115.2 68 92.6
Gohir.A12G165450 Gossypium hirsutum HOM05D004182 ORTHO05D007321 5.1e-24 114.8 68 91.2
arahy.Tifrunner.gnm1.ann1.DWP51K Arachis hypogaea HOM05D000963 ORTHO05D007321 8.8e-24 114.0 88 75.0
arahy.Tifrunner.gnm1.ann1.QIZU11 Arachis hypogaea HOM05D007250 ORTHO05D009162 8.8e-24 114.0 69 88.4
arahy.Tifrunner.gnm1.ann1.TV6F30 Arachis hypogaea HOM05D004182 ORTHO05D007321 3.3e-23 112.1 68 88.2
EL10Ac7g17372 Beta vulgaris HOM05D004182 ORTHO05D007321 4.4e-23 111.7 68 89.7
EL10As10g23966 Beta vulgaris HOM05D004182 ORTHO05D007321 4.4e-23 111.7 68 89.7
CARHR044290 Cardamine hirsuta HOM05D004182 ORTHO05D007321 4.4e-23 111.7 60 96.7
arahy.Tifrunner.gnm1.ann1.UTH6FS Arachis hypogaea HOM05D004182 ORTHO05D007321 9.7e-23 110.5 68 86.8
Nn031s41606 Nelumbo nucifera HOM05D004182 ORTHO05D007321 9.7e-23 110.5 69 91.3
Sopen10g016590 Solanum pennellii HOM05D004182 ORTHO05D007321 1.7e-22 109.8 68 88.2
arahy.Tifrunner.gnm1.ann1.NV4G0I Arachis hypogaea HOM05D004182 ORTHO05D007321 2.8e-22 109.0 68 86.8
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 2.8e-22 109.0 58 89.7
Lsat_1_v5_gn_0_47640 Lactuca sativa HOM05D004182 ORTHO05D007321 3.7e-22 108.6 68 88.2
arahy.Tifrunner.gnm1.ann1.73L6LP Arachis hypogaea HOM05D004182 ORTHO05D007321 1.4e-21 106.7 68 85.3
Hma1.2p1_1418F.1_g282260 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 9.1e-21 104.0 68 83.8
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 1.2e-20 103.6 58 86.2
arahy.Tifrunner.gnm1.ann1.096T0J Arachis hypogaea HOM05D004182 ORTHO05D007321 1.5e-20 103.2 146 47.9
Psat0s9163g0080 Pisum sativum HOM05D004182 ORTHO05D007321 1.5e-20 103.2 84 71.4
Nn219s45281 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.6e-20 102.4 61 91.8
Nn442s46688 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.6e-20 102.4 61 91.8
Psat7g033600 Pisum sativum HOM05D004182 ORTHO05D007321 7.7e-20 100.9 68 83.8
Psat5g118800 Pisum sativum HOM05D004182 ORTHO05D007321 1.7e-19 99.8 84 69.0
Gohir.D05G169433 Gossypium hirsutum HOM05D004182 ORTHO05D007321 2.2e-19 99.4 68 82.4
arahy.Tifrunner.gnm1.ann1.8WTZ4N Arachis hypogaea HOM05D004182 ORTHO05D007321 3.8e-19 98.6 62 85.5
Cpa.g.c43052.1 Carica papaya HOM05D004182 ORTHO05D007321 5.0e-19 98.2 67 83.6
EL10Ac8g19701 Beta vulgaris HOM05D004182 ORTHO05D007321 1.4e-18 96.7 63 85.7
Sopen02g009080 Solanum pennellii HOM05D004182 ORTHO05D007321 1.4e-18 96.7 144 47.9
Psat0s2011g0080 Pisum sativum HOM05D004182 ORTHO05D007321 4.2e-18 95.1 91 62.6
PGSC0003DMG400043035 Solanum tuberosum HOM05D004182 ORTHO05D007321 4.2e-18 95.1 63 87.3
Gohir.D13G041550 Gossypium hirsutum HOM05D004182 ORTHO05D007321 9.4e-18 94.0 68 76.5
Nn070s42382 Nelumbo nucifera HOM05D004182 ORTHO05D007321 3.6e-17 92.0 70 75.7
Sc14g0004760 Simmondsia chinensis HOM05D004182 ORTHO05D007321 4.7e-17 91.7 102 58.8
arahy.Tifrunner.gnm1.ann1.S1ZEXT Arachis hypogaea HOM05D004182 ORTHO05D007321 6.1e-17 91.3 56 85.7
Psat5g167880 Pisum sativum HOM05D000009 ORTHO05D000008 8.0e-17 90.9 68 76.5
Sed0007203 Sechium edule HOM05D004182 ORTHO05D007321 8.0e-17 90.9 68 76.5
Sed0018388 Sechium edule HOM05D004182 ORTHO05D007321 8.0e-17 90.9 68 76.5
Sed0018833 Sechium edule HOM05D004182 ORTHO05D007321 8.0e-17 90.9 68 76.5
Sed0022676 Sechium edule HOM05D004182 ORTHO05D007321 8.0e-17 90.9 68 76.5
Glyma.09G133950 Glycine max HOM05D004182 ORTHO05D007321 1.0e-16 90.5 68 70.6
Phvul.010G035850 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 1.4e-16 90.1 67 76.1
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 1.4e-16 90.1 109 56.9
Sc05g0004140 Simmondsia chinensis HOM05D001966 ORTHO05D011119 1.8e-16 89.7 116 54.3
Atru.chr6.228 Acer truncatum HOM05D004182 ORTHO05D004271 2.3e-16 89.4 42 100.0
Sc21g0003840 Simmondsia chinensis HOM05D004182 ORTHO05D007321 3.0e-16 89.0 66 80.3
PGSC0003DMG400027964 Solanum tuberosum HOM05D004182 ORTHO05D007321 3.0e-16 89.0 58 86.2
SHI36542 Sapria himalayana HOM05D004182 ORTHO05D007321 1.5e-15 86.7 68 75.0
Sc03g0005670 Simmondsia chinensis HOM05D004182 ORTHO05D007321 3.3e-15 85.5 58 81.0
arahy.Tifrunner.gnm1.ann1.Y35SJI Arachis hypogaea HOM05D004182 ORTHO05D007321 4.4e-15 85.1 95 53.7
Sopen09g027020 Solanum pennellii HOM05D001966 ORTHO05D011119 4.4e-15 85.1 106 54.7
Sed0024115 Sechium edule HOM05D004182 ORTHO05D007321 5.7e-15 84.7 68 72.1
Glyma.09G164000 Glycine max HOM05D004182 ORTHO05D007321 1.7e-14 83.2 55 81.8
Phvul.010G003500 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 3.7e-14 82.0 68 70.6
Psat4g168320 Pisum sativum HOM05D004182 ORTHO05D007321 6.3e-14 81.3 67 73.1
arahy.Tifrunner.gnm1.ann1.5LT2YD Arachis hypogaea HOM05D000580 ORTHO05D007321 1.4e-13 80.1 65 69.2
BcaC05g26432 Brassica carinata HOM05D004182 ORTHO05D007321 9.1e-13 77.4 58 75.9
HPP92_028384 Vanilla planifolia HOM05D004182 ORTHO05D007321 9.1e-13 77.4 49 91.8
HPP92_028405 Vanilla planifolia HOM05D004182 ORTHO05D007321 9.1e-13 77.4 49 91.8
HPP92_028414 Vanilla planifolia HOM05D004182 ORTHO05D007321 9.1e-13 77.4 49 91.8
HPP92_028420 Vanilla planifolia HOM05D004182 ORTHO05D007321 9.1e-13 77.4 49 91.8
HPP92_028429 Vanilla planifolia HOM05D004182 ORTHO05D007321 9.1e-13 77.4 49 91.8
HPP92_028433 Vanilla planifolia HOM05D004182 ORTHO05D007321 9.1e-13 77.4 49 91.8
Gohir.A05G323708 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.2e-12 77.0 38 97.4
arahy.Tifrunner.gnm1.ann1.0KS2YP Arachis hypogaea HOM05D004182 ORTHO05D007321 5.9e-12 74.7 57 70.2
EL10As15g24133 Beta vulgaris HOM05D004182 ORTHO05D007321 1.3e-11 73.6 126 46.0
Nn6g32823 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.2e-11 72.8 78 62.8
Psat0s1116g0080 Pisum sativum HOM05D004182 ORTHO05D007321 2.2e-11 72.8 60 71.7
Sopen11g020180 Solanum pennellii HOM05D001966 ORTHO05D010127 2.9e-11 72.4 51 74.5
CAN.G1119.15 Capsicum annuum HOM05D002978 ORTHO05D003339 1.9e-10 69.7 62 66.1
Nn8g40575 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.5e-10 69.3 48 81.2
Sed0012210 Sechium edule HOM05D004182 ORTHO05D007321 3.2e-10 68.9 68 61.8
Sopen09g015240 Solanum pennellii HOM05D000004 ORTHO05D011466 7.2e-10 67.8 37 86.5
arahy.Tifrunner.gnm1.ann1.5LAD0A Arachis hypogaea HOM05D004182 ORTHO05D007321 2.7e-09 65.9 58 65.5
arahy.Tifrunner.gnm1.ann1.P0IFIP Arachis hypogaea HOM05D004182 ORTHO05D007321 6.1e-09 64.7 38 84.2
Gorai.007G258700 Gossypium raimondii HOM05D004182 ORTHO05D007321 8.0e-09 64.3 38 84.2
VMungo0720G0883 Vigna mungo HOM05D004182 ORTHO05D007321 1.4e-08 63.5 37 86.5
ECA247G0006 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.0e-08 62.4 71 56.3
Gohir.D10G118433 Gossypium hirsutum HOM05D004182 ORTHO05D007321 4.0e-08 62.0 38 78.9
Phvul.003G041600 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 6.7e-08 61.2 49 73.5
Phvul.010G068400 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 1.2e-07 60.5 48 75.0
Migut.I00342 Erythranthe guttata HOM05D004182 ORTHO05D007321 1.5e-07 60.1 38 89.5
Ciclev10010312m.g Citrus clementina HOM05D000071 ORTHO05D000029 2.6e-07 59.3 37 89.2
Gohir.A07G125450 Gossypium hirsutum HOM05D004182 ORTHO05D007321 2.6e-07 59.3 38 76.3
VMungo1127G1475 Vigna mungo HOM05D000959 ORTHO05D000775 3.3e-07 58.9 54 61.1
Cpa.g.sc76.14 Carica papaya HOM05D004182 ORTHO05D007321 2.8e-06 55.8 56 58.9
BraSC103t45435Z Brassica rapa HOM05D004182 ORTHO05D007321 6.3e-06 54.7 35 82.9
SEGI_13516 Sequoiadendron giganteum HOM05D004182 ORTHO05D007321 6.3e-06 54.7 55 54.5
SEGI_24666 Sequoiadendron giganteum HOM05D001966 ORTHO05D011119 6.3e-06 54.7 55 54.5
SEGI_31611 Sequoiadendron giganteum HOM05D001966 ORTHO05D011119 6.3e-06 54.7 55 54.5


User provided reference genes

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