Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 4.0e-170 601.3 289 100.0
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 1.7e-125 453.0 235 91.9
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 1.7e-125 453.0 235 91.9
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 6.9e-122 441.0 235 90.6
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.1e-119 433.7 235 89.4
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 3.2e-119 432.2 235 88.9
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 9.3e-119 430.6 235 88.5
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.1e-108 397.1 235 81.7
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.5e-108 396.7 235 81.7
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 2.4e-106 389.4 234 82.1
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 9.0e-106 387.5 234 82.5
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 9.0e-106 387.5 234 82.5
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 4.5e-105 385.2 235 80.4
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 4.5e-105 385.2 235 80.4
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 7.6e-105 384.4 237 79.3
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 7.6e-105 384.4 237 79.3
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.2e-104 382.9 239 80.3
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 6.4e-104 381.3 239 79.9
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.1e-103 380.6 238 79.8
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 1.4e-103 380.2 234 81.2
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 1.9e-103 379.8 235 79.6
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 4.2e-103 378.6 234 79.9
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 5.5e-103 378.3 237 79.7
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 7.1e-103 377.9 239 78.7
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.8e-101 373.2 245 76.7
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 6.7e-101 371.3 234 79.1
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 3.7e-99 365.5 234 76.9
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 3.7e-99 365.5 234 76.9
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 3.7e-99 365.5 234 76.9
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 3.7e-99 365.5 234 76.9
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 3.1e-98 362.5 234 76.9
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 5.3e-98 361.7 242 78.1
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 9.0e-98 360.9 248 73.0
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 8.4e-96 354.4 235 76.2
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 1.6e-94 350.1 253 72.3
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 3.0e-93 345.9 253 71.9
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 6.7e-93 344.7 213 78.4
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.8e-91 339.3 245 71.0
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.8e-91 338.6 235 74.0
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.8e-91 338.6 235 74.0
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 6.3e-91 338.2 251 71.3
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 1.4e-90 337.0 234 73.9
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 2.4e-90 336.3 237 73.0
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 2.4e-90 336.3 237 73.0
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 2.4e-90 336.3 237 73.0
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 2.4e-90 336.3 237 73.0
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 2.4e-90 336.3 237 73.0
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 2.4e-90 336.3 237 73.0
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 5.5e-87 325.1 202 78.7
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 1.2e-86 323.9 237 69.6
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 3.3e-84 315.8 192 79.2
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 3.3e-84 315.8 192 79.2
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 1.2e-81 307.4 234 68.8
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 1.1e-76 290.8 234 65.0
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 6.1e-70 268.5 143 87.4
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 6.7e-69 265.0 120 100.0
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 6.1e-62 241.9 115 95.7
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 2.0e-60 236.9 234 55.6
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 1.7e-59 233.8 205 60.5
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.4e-58 230.7 164 69.5
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 4.1e-58 229.2 157 73.9
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 9.1e-58 228.0 166 69.3
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 5.9e-57 225.3 148 73.0
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 7.2e-55 218.4 168 69.6
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 2.7e-54 216.5 181 65.2
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 1.2e-52 211.1 248 52.8
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.0e-50 201.8 193 58.0
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 4.2e-47 192.6 98 89.8
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 4.2e-47 192.6 98 89.8
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.6e-38 164.1 109 78.0
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 1.5e-36 157.5 103 73.8
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.0e-36 157.1 102 77.5
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 6.6e-32 142.1 170 51.2
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.5e-31 141.0 138 58.0
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 7.1e-26 122.1 95 69.5
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 2.1e-22 110.5 71 73.2
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 1.8e-21 107.5 69 72.5
BcaC01g03561 Brassica carinata HOM05D025145 ORTHO05D016019 8.6e-16 88.6 43 95.3
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 9.6e-15 85.1 76 63.2
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.1e-14 84.0 161 36.0
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 3.4e-12 76.6 51 74.5
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 7.1e-10 68.9 53 64.2
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 1.2e-09 68.2 53 64.2
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 1.2e-09 68.2 53 64.2
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.7e-09 67.0 126 41.3
DCAR_004797 Daucus carota HOM05D003783 ORTHO05D004568 8.7e-08 62.0 29 86.2
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 1.9e-07 60.8 53 58.5
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 4.3e-07 59.7 67 53.7
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 5.6e-07 59.3 53 58.5
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 7.3e-07 58.9 53 60.4
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 7.3e-07 58.9 57 54.4
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 2.1e-06 57.4 55 60.0
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 2.8e-06 57.0 53 58.5


User provided reference genes

Program Settings