Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 0.0e+00 1190.6 636 100.0
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1179.9 646 98.3
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1173.7 648 97.8
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 0.0e+00 1135.6 647 93.0
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1122.5 647 92.9
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1118.2 647 92.6
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 0.0e+00 1082.4 646 90.2
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 0.0e+00 1076.2 649 89.5
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 7.3e-310 1066.6 652 88.3
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 2.8e-309 1064.7 646 89.3
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 4.8e-309 1063.9 646 85.9
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 6.9e-308 1060.1 646 89.5
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 6.9e-308 1060.1 646 89.5
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 2.0e-307 1058.5 646 89.3
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 9.9e-307 1056.2 647 88.4
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 6.4e-306 1053.5 646 89.0
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 1.4e-305 1052.4 648 88.4
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 2.4e-300 1035.0 648 87.7
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 4.2e-297 1024.2 646 86.7
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 2.5e-289 998.4 648 80.6
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 2.1e-288 995.3 649 81.7
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 4.1e-252 874.8 632 75.8
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 5.9e-251 870.9 655 71.1
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 2.7e-248 862.1 655 70.5
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 2.3e-247 859.0 662 69.6
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 3.0e-247 858.6 660 69.8
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 8.8e-247 857.1 654 69.0
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 8.8e-247 857.1 654 69.0
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 9.8e-246 853.6 661 70.3
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 2.2e-245 852.4 654 69.6
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 3.7e-245 851.7 655 71.1
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 3.1e-244 848.6 655 70.5
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 3.1e-244 848.6 658 69.9
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 7.0e-244 847.4 656 68.1
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 3.5e-243 845.1 656 68.6
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 5.9e-243 844.3 661 69.6
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 1.7e-242 842.8 661 68.2
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 2.9e-242 842.0 661 68.2
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 3.8e-242 841.6 652 67.3
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 6.5e-242 840.9 654 68.2
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 1.1e-241 840.1 653 68.6
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 7.2e-241 837.4 658 67.6
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 3.6e-240 835.1 662 67.7
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 3.6e-240 835.1 634 70.8
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 4.7e-240 834.7 655 67.3
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 1.0e-239 833.6 653 67.5
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 4.0e-239 831.6 652 69.0
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 5.2e-239 831.2 660 68.5
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 1.5e-238 829.7 663 67.7
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 2.0e-238 829.3 652 68.4
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 5.7e-238 827.8 650 67.8
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 2.4e-236 822.4 653 68.5
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 7.0e-236 820.8 657 68.5
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 9.2e-236 820.5 653 68.1
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 1.2e-235 820.1 646 68.6
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 2.0e-235 819.3 653 68.0
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 3.5e-235 818.5 664 66.9
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 1.0e-234 817.0 655 66.6
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 3.8e-234 815.1 655 67.9
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 3.3e-233 812.0 638 68.5
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 2.8e-232 808.9 649 68.3
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 1.4e-231 806.6 651 67.3
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 3.0e-231 805.4 657 65.4
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 3.0e-231 805.4 659 65.6
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 3.0e-231 805.4 646 68.0
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 1.2e-230 803.5 645 67.9
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 1.5e-230 803.1 661 65.1
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.7e-229 799.7 656 65.5
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 3.7e-229 798.5 653 66.6
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 4.1e-228 795.0 658 65.7
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 2.0e-227 792.7 647 66.3
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 1.7e-226 789.6 657 66.1
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 5.0e-226 788.1 655 64.6
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 9.5e-225 783.9 584 69.5
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 8.0e-224 780.8 657 65.3
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 3.1e-223 778.9 656 64.6
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 4.0e-223 778.5 657 65.3
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 8.9e-223 777.3 658 64.1
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 1.2e-222 776.9 659 64.8
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 1.5e-222 776.5 656 64.5
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 4.4e-222 775.0 653 65.2
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 4.4e-222 775.0 656 64.3
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 5.8e-222 774.6 661 64.6
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 2.2e-221 772.7 651 64.2
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 4.9e-221 771.5 653 64.8
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 8.3e-221 770.8 655 65.8
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 1.1e-220 770.4 576 70.8
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 1.4e-220 770.0 656 64.2
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 4.1e-220 768.5 659 64.0
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 2.0e-219 766.1 661 63.1
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 2.7e-219 765.8 651 62.7
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 3.9e-218 761.9 639 65.1
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 5.0e-218 761.5 628 69.3
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 6.6e-218 761.1 647 64.8
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 1.5e-217 760.0 661 65.8
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 2.5e-217 759.2 638 65.4
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 6.2e-216 754.6 656 61.1
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 1.1e-215 753.8 659 62.4
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 1.8e-215 753.1 659 63.1
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 3.1e-215 752.3 654 64.2
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 9.8e-214 747.3 660 61.5
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.7e-213 746.5 650 64.2
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 2.1e-203 713.0 653 59.9
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.1e-201 707.2 656 58.7
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 2.1e-200 703.0 649 62.2
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 5.2e-199 698.4 663 60.3
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 7.1e-196 688.0 657 58.8
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 9.3e-196 687.6 657 58.8
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 5.4e-188 661.8 655 56.8
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 1.5e-185 653.7 649 56.1
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 1.6e-184 650.2 629 64.7
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 1.6e-184 650.2 657 56.8
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 1.6e-179 633.6 660 54.8
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.3e-178 630.6 635 57.2
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.5e-174 617.1 552 62.5
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 1.4e-172 610.5 654 53.7
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 3.2e-172 609.4 638 56.7
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 4.2e-172 609.0 646 55.1
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 3.5e-171 605.9 656 52.4
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 3.3e-153 546.2 660 49.2
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 8.8e-146 521.5 552 54.5
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 1.8e-138 497.3 680 45.9
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 2.7e-131 473.4 680 42.6
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 1.7e-117 427.6 685 40.6
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 2.3e-114 417.2 372 61.3
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 1.2e-94 351.7 337 61.1
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 2.3e-90 337.4 243 68.3
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 9.6e-84 315.5 390 46.7
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 1.6e-62 245.0 297 51.2
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 6.7e-45 186.4 563 29.0
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 1.4e-34 152.1 113 70.8
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 3.1e-34 151.0 118 66.9
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 1.6e-25 122.1 113 61.1
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 6.8e-13 80.1 94 51.1
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 1.3e-08 65.9 99 37.4
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 2.3e-08 65.1 44 70.5


User provided reference genes

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