Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC3t20087H Brassica oleracea HOM05D001994 ORTHO05D001954 2.2e-28 128.3 65 100.0
BolC6t40170H Brassica oleracea HOM05D001994 ORTHO05D001954 2.2e-28 128.3 65 100.0
BcaC08g47615 Brassica carinata HOM05D001994 ORTHO05D001954 7.4e-24 113.2 57 100.0
BcaC05g25210 Brassica carinata HOM05D001994 ORTHO05D001954 6.5e-20 100.1 56 91.1
C05p10860 Brassica napus HOM05D001994 ORTHO05D001954 1.8e-17 92.0 55 81.8
BolC5t29832H Brassica oleracea HOM05D001994 ORTHO05D001954 1.8e-17 92.0 55 81.8
Sp1g14180 Schrenkiella parvula HOM05D001994 ORTHO05D001954 8.2e-15 83.2 55 72.7
Thhalv10008707m.g Eutrema salsugineum HOM05D001994 ORTHO05D001954 1.4e-14 82.4 55 72.7
BcaC07g38797 Brassica carinata HOM05D001994 ORTHO05D001954 4.1e-14 80.9 55 72.7
BolC8t49359H Brassica oleracea HOM05D001994 ORTHO05D001954 4.1e-14 80.9 55 72.7
BcaB03g13053 Brassica carinata HOM05D001994 ORTHO05D001954 6.9e-14 80.1 56 73.2
A06p11930 Brassica napus HOM05D001994 ORTHO05D001954 2.0e-13 78.6 55 69.1
A09p61110 Brassica napus HOM05D001994 ORTHO05D001954 2.0e-13 78.6 55 69.1
C05p14110 Brassica napus HOM05D001994 ORTHO05D001954 2.0e-13 78.6 55 69.1
C08p17330 Brassica napus HOM05D001994 ORTHO05D001954 2.0e-13 78.6 55 70.9
C08p44710 Brassica napus HOM05D001994 ORTHO05D001954 2.0e-13 78.6 55 69.1
BolC5t30142H Brassica oleracea HOM05D001994 ORTHO05D001954 2.0e-13 78.6 55 69.1
BraA06t24363Z Brassica rapa HOM05D001994 ORTHO05D001954 2.0e-13 78.6 55 69.1
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 2.0e-13 78.6 55 67.3
A08p31470 Brassica napus HOM05D001994 ORTHO05D001954 2.6e-13 78.2 55 69.1
BraA08t35069Z Brassica rapa HOM05D001994 ORTHO05D001954 2.6e-13 78.2 55 69.1
BcaB03g14513 Brassica carinata HOM05D001994 ORTHO05D001954 3.4e-13 77.8 55 69.1
BcaC07g41467 Brassica carinata HOM05D001994 ORTHO05D001954 3.4e-13 77.8 55 69.1
BraA09t41485Z Brassica rapa HOM05D001994 ORTHO05D001954 3.4e-13 77.8 55 69.1
Aa31LG7G470 Aethionema arabicum HOM05D001994 ORTHO05D001954 5.9e-13 77.0 55 67.3
BolC8t52017H Brassica oleracea HOM05D001994 ORTHO05D001954 2.2e-12 75.1 55 67.3
THA.LOC104812436 Tarenaya hassleriana HOM05D001994 ORTHO05D001954 5.0e-12 73.9 55 63.6
Gohir.A06G183100 Gossypium hirsutum HOM05D001994 ORTHO05D001954 6.5e-12 73.6 55 63.6
Gohir.D06G189800 Gossypium hirsutum HOM05D001994 ORTHO05D001954 6.5e-12 73.6 55 63.6
Gorai.010G222600 Gossypium raimondii HOM05D001994 ORTHO05D001954 6.5e-12 73.6 55 63.6
Potri.001G047100 Populus trichocarpa HOM05D001994 ORTHO05D001954 6.5e-12 73.6 55 63.6
Potri.003G180800 Populus trichocarpa HOM05D001994 ORTHO05D001954 6.5e-12 73.6 55 63.6
CARHR016400 Cardamine hirsuta HOM05D001994 ORTHO05D001954 1.4e-11 72.4 55 67.3
Sabra03G0132300 Salix brachista HOM05D001994 ORTHO05D001954 1.9e-11 72.0 55 61.8
Carub.0001s1568 Capsella rubella HOM05D001994 ORTHO05D001954 2.5e-11 71.6 55 63.6
AT1G15880 Arabidopsis thaliana HOM05D001994 ORTHO05D001954 5.5e-11 70.5 55 65.5
Manes.11G064800 Manihot esculenta HOM05D001994 ORTHO05D001954 5.5e-11 70.5 55 61.8
Lj3g0010287 Lotus japonicus HOM05D001994 ORTHO05D001954 7.2e-11 70.1 55 63.6
AL1G28040 Arabidopsis lyrata HOM05D001994 ORTHO05D001954 1.2e-10 69.3 55 63.6
COL.COLO4_26672 Corchorus olitorius HOM05D001994 ORTHO05D001954 1.2e-10 69.3 55 60.0
Hma1.2p1_0230F.1_g097260 Hydrangea macrophylla HOM05D001994 ORTHO05D001954 1.2e-10 69.3 53 62.3
Thecc.06G039400 Theobroma cacao HOM05D001994 ORTHO05D001954 1.6e-10 68.9 53 62.3
Actinidia13202 Actinidia chinensis HOM05D001994 ORTHO05D001954 2.1e-10 68.6 55 60.0
CSS0048938 Camellia sinensis var. sinensis HOM05D001994 ORTHO05D001954 2.1e-10 68.6 53 64.2
PSO339G5511 Papaver somniferum HOM05D001994 ORTHO05D001954 2.1e-10 68.6 55 58.2
TAR625G0574 Trochodendron aralioides HOM05D001994 ORTHO05D001954 2.1e-10 68.6 55 58.2
Ciclev10026431m.g Citrus clementina HOM05D001994 ORTHO05D001954 2.7e-10 68.2 55 60.0
CSS0019888 Camellia sinensis var. sinensis HOM05D001994 ORTHO05D001954 3.5e-10 67.8 55 58.2
CiPaw.01G253400 Carya illinoinensis HOM05D001994 ORTHO05D001954 3.5e-10 67.8 55 60.0
Lalb_Chr25g0278961 Lupinus albus HOM05D001994 ORTHO05D001954 3.5e-10 67.8 55 60.0
TAR371G0271 Trochodendron aralioides HOM05D001994 ORTHO05D001954 3.5e-10 67.8 49 65.3
TAR371G0527 Trochodendron aralioides HOM05D001994 ORTHO05D001954 3.5e-10 67.8 49 65.3
Atru.chr10.2400 Acer truncatum HOM05D001994 ORTHO05D001954 4.6e-10 67.4 55 63.6
TAR636G1457 Trochodendron aralioides HOM05D001994 ORTHO05D001954 4.6e-10 67.4 55 56.4
Cfa001888 Carpinus fangiana HOM05D001994 ORTHO05D001954 6.1e-10 67.0 49 67.3
CSS0020502 Camellia sinensis var. sinensis HOM05D001994 ORTHO05D001954 7.9e-10 66.6 55 56.4
QL05p035317 Quercus lobata HOM05D001994 ORTHO05D001954 7.9e-10 66.6 49 67.3
TWI12G0732 Tripterygium wilfordii HOM05D001994 ORTHO05D001954 7.9e-10 66.6 55 58.2
Haze_16654 Corylus avellana HOM05D001994 ORTHO05D001954 1.0e-09 66.2 55 58.2
Duzib192G0880 Durio zibethinus HOM05D001994 ORTHO05D001954 1.0e-09 66.2 55 58.2
AUR62026987 Chenopodium quinoa HOM05D001994 ORTHO05D001954 1.3e-09 65.9 55 56.4
MD12G1002100 Malus domestica HOM05D001994 ORTHO05D001954 1.3e-09 65.9 55 56.4
MD14G1001700 Malus domestica HOM05D001994 ORTHO05D001954 1.3e-09 65.9 55 56.4
unitig_32.g10889 Utricularia gibba HOM05D001994 ORTHO05D001954 1.3e-09 65.9 54 55.6
vmacro11231 Vaccinium macrocarpon HOM05D001994 ORTHO05D001954 1.3e-09 65.9 55 54.5
Aqoxy7G03483 Aquilegia oxysepala HOM05D001994 ORTHO05D001954 1.8e-09 65.5 55 58.2
Oeu056769.1 Olea europaea HOM05D001994 ORTHO05D001954 1.8e-09 65.5 54 59.3
PSO384G2471 Papaver somniferum HOM05D001994 ORTHO05D001954 1.8e-09 65.5 55 54.5
Rhsim07G0162900 Rhododendron simsii HOM05D001994 ORTHO05D001954 1.8e-09 65.5 55 56.4
CAN.G199.66 Capsicum annuum HOM05D001994 ORTHO05D001954 2.3e-09 65.1 54 57.4
Cpa.g.sc10.103 Carica papaya HOM05D001994 ORTHO05D001954 2.3e-09 65.1 56 58.9
FvH4_6g28830 Fragaria vesca HOM05D001994 ORTHO05D001954 2.3e-09 65.1 55 54.5
FAN14G3785 Fragaria x ananassa HOM05D001994 ORTHO05D001954 2.3e-09 65.1 55 54.5
Prupe.3G096500 Prunus persica HOM05D001994 ORTHO05D001954 2.3e-09 65.1 54 55.6
TWI75G0158 Tripterygium wilfordii HOM05D001994 ORTHO05D001954 2.3e-09 65.1 55 58.2
Nitab4.5_0002973g0040 Nicotiana tabacum HOM05D001994 ORTHO05D001954 3.0e-09 64.7 48 62.5
Rhsim02G0208000 Rhododendron simsii HOM05D001994 ORTHO05D001954 3.9e-09 64.3 53 58.5
Ca_01023_v3 Cicer arietinum L. HOM05D001994 ORTHO05D001954 5.1e-09 63.9 56 55.4
Nn2g12287 Nelumbo nucifera HOM05D001994 ORTHO05D001954 5.1e-09 63.9 55 56.4
Peaxi162Scf00430g00414 Petunia axillaris HOM05D001994 ORTHO05D001954 5.1e-09 63.9 54 55.6
Solyc06g065740.4 Solanum lycopersicum HOM05D001994 ORTHO05D001954 5.1e-09 63.9 54 57.4
Sopen06g024270 Solanum pennellii HOM05D001994 ORTHO05D001954 5.1e-09 63.9 54 57.4
unitig_748.g8263 Utricularia gibba HOM05D001994 ORTHO05D001954 5.1e-09 63.9 54 53.7
AUR62030827 Chenopodium quinoa HOM05D001994 ORTHO05D001954 6.7e-09 63.5 46 65.2
FAN05G2047 Fragaria x ananassa HOM05D001994 ORTHO05D001954 6.7e-09 63.5 55 52.7
Psat5g304720 Pisum sativum HOM05D001994 ORTHO05D001954 6.7e-09 63.5 55 56.4
CiPaw.02G161300 Carya illinoinensis HOM05D001994 ORTHO05D001954 8.7e-09 63.2 55 56.4
FAN09G4548 Fragaria x ananassa HOM05D001994 ORTHO05D001954 8.7e-09 63.2 55 52.7
Nitab4.5_0000486g0060 Nicotiana tabacum HOM05D001994 ORTHO05D001954 8.7e-09 63.2 45 66.7
Psat7g259720 Pisum sativum HOM05D001994 ORTHO05D001954 8.7e-09 63.2 51 60.8
SalBow4G2573 Salvia bowleyana HOM05D001994 ORTHO05D001954 8.7e-09 63.2 49 61.2
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 8.7e-09 63.2 55 54.5
ClCG07G012120 Citrullus lanatus HOM05D001994 ORTHO05D001954 1.1e-08 62.8 55 50.9
Dinv09914 Davidia involucrata HOM05D001994 ORTHO05D001954 1.1e-08 62.8 55 58.2
arahy.Tifrunner.gnm1.ann1.4TE40S Arachis hypogaea HOM05D001994 ORTHO05D001954 1.5e-08 62.4 55 54.5
arahy.Tifrunner.gnm1.ann1.K18KXM Arachis hypogaea HOM05D001994 ORTHO05D001954 1.5e-08 62.4 55 54.5
ECA233G1283 Erigeron canadensis HOM05D001994 ORTHO05D001954 1.5e-08 62.4 55 54.5
Manes.04G104300 Manihot esculenta HOM05D001994 ORTHO05D001954 1.5e-08 62.4 55 54.5
PGSC0003DMG400026095 Solanum tuberosum HOM05D001994 ORTHO05D001954 1.5e-08 62.4 54 55.6
TPR.G38755 Trifolium pratense HOM05D001994 ORTHO05D001954 1.5e-08 62.4 55 54.5
arahy.Tifrunner.gnm1.ann1.U3C25F Arachis hypogaea HOM05D001994 ORTHO05D001954 1.9e-08 62.0 57 56.1
MELO3C017833.2 Cucumis melo HOM05D001994 ORTHO05D001954 1.9e-08 62.0 55 52.7
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 1.9e-08 62.0 55 52.7
Nitab4.5_0003811g0030 Nicotiana tabacum HOM05D001994 ORTHO05D001954 1.9e-08 62.0 54 53.7
RcHm_v2.0_Chr2g0133301 Rosa chinensis HOM05D001994 ORTHO05D001954 1.9e-08 62.0 55 52.7
RcHm_v2.0_Chr2g0133361 Rosa chinensis HOM05D001994 ORTHO05D001954 1.9e-08 62.0 55 52.7
Hund00449 Selenicereus undatus HOM05D001994 ORTHO05D001954 1.9e-08 62.0 55 52.7
vmacro05144 Vaccinium macrocarpon HOM05D001994 ORTHO05D001954 1.9e-08 62.0 55 54.5
Nitab4.5_0002503g0100 Nicotiana tabacum HOM05D001994 ORTHO05D001954 2.5e-08 61.6 54 53.7
PGR031G3441 Punica granatum HOM05D001994 ORTHO05D001954 2.5e-08 61.6 55 56.4
GSVIVG01035904001 Vitis vinifera HOM05D001994 ORTHO05D001954 2.5e-08 61.6 54 57.4
Cc08_g00070 Coffea canephora HOM05D001994 ORTHO05D001954 3.3e-08 61.2 54 53.7
Medtr4g006570 Medicago truncatula HOM05D001994 ORTHO05D001954 3.3e-08 61.2 55 54.5
SGA_v2.0_scaffold64G22012 Striga asiatica HOM05D001994 ORTHO05D001954 3.3e-08 61.2 54 53.7
TPR.G19142 Trifolium pratense HOM05D001994 ORTHO05D001954 3.3e-08 61.2 55 54.5
arahy.Tifrunner.gnm1.ann1.83S23U Arachis hypogaea HOM05D001994 ORTHO05D001954 4.3e-08 60.8 57 54.4
Lalb_Chr14g0374041 Lupinus albus HOM05D001994 ORTHO05D001954 4.3e-08 60.8 55 54.5
Sed0001620 Sechium edule HOM05D001994 ORTHO05D001954 4.3e-08 60.8 55 50.9
Hund06149 Selenicereus undatus HOM05D001994 ORTHO05D001954 4.3e-08 60.8 49 59.2
Ah.01g006810 Amaranthus hybridus HOM05D001994 ORTHO05D001954 5.7e-08 60.5 45 64.4
HanXRQChr01g0030681 Helianthus annuus HOM05D001994 ORTHO05D001954 5.7e-08 60.5 55 52.7
Medtr2g104910 Medicago truncatula HOM05D001994 ORTHO05D001954 5.7e-08 60.5 56 53.6
SGA_v2.0_scaffold20G09080 Striga asiatica HOM05D001994 ORTHO05D001954 5.7e-08 60.5 54 50.0
Lsat_1_v5_gn_6_19560 Lactuca sativa HOM05D001994 ORTHO05D001954 7.4e-08 60.1 46 63.0
Peaxi162Scf00992g00314 Petunia axillaris HOM05D001994 ORTHO05D001954 7.4e-08 60.1 45 62.2
HanXRQChr02g0050041 Helianthus annuus HOM05D001994 ORTHO05D001954 1.3e-07 59.3 55 52.7
Sc12g0008500 Simmondsia chinensis HOM05D001994 ORTHO05D001954 1.3e-07 59.3 55 50.9
EL10Ac9g22223 Beta vulgaris HOM05D001994 ORTHO05D001954 2.2e-07 58.5 55 47.3
CANSAT56G4375 Cannabis sativa HOM05D001994 ORTHO05D001954 2.2e-07 58.5 55 50.9
FAN02G3685 Fragaria x ananassa HOM05D001994 ORTHO05D001954 2.2e-07 58.5 55 49.1
Glyma.08G217200 Glycine max HOM05D001994 ORTHO05D001954 2.2e-07 58.5 55 56.4
Lj8A735G56 Lonicera japonica HOM05D001994 ORTHO05D001954 2.8e-07 58.2 57 57.9
VMungo0331G1149 Vigna mungo HOM05D001994 ORTHO05D001954 2.8e-07 58.2 55 52.7
Phvul.010G160100 Phaseolus vulgaris HOM05D001994 ORTHO05D001954 3.7e-07 57.8 55 52.7
Lsat_1_v5_gn_1_42920 Lactuca sativa HOM05D001994 ORTHO05D001954 4.8e-07 57.4 55 50.9
Glyma.07G025200 Glycine max HOM05D001994 ORTHO05D001954 6.3e-07 57.0 55 50.9
Lj7A730T42 Lonicera japonica HOM05D001994 ORTHO05D001954 6.3e-07 57.0 50 60.0
ECA248G1195 Erigeron canadensis HOM05D001994 ORTHO05D001954 1.8e-06 55.5 55 47.3
Migut.A00005 Erythranthe guttata HOM05D001994 ORTHO05D001954 1.8e-06 55.5 55 50.9
Nn8g39769 Nelumbo nucifera HOM05D001994 ORTHO05D001954 6.9e-06 53.5 55 47.3
Nn8g40602 Nelumbo nucifera HOM05D001994 ORTHO05D001954 6.9e-06 53.5 50 52.0


User provided reference genes

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