Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t30606H Brassica oleracea HOM05D003234 ORTHO05D003635 2.1e-68 262.3 139 100.0
Aa31LG7G4760 Aethionema arabicum HOM05D003234 ORTHO05D003635 1.9e-29 132.9 73 100.0
BcaB07g32048 Brassica carinata HOM05D003234 ORTHO05D003635 1.9e-29 132.9 73 100.0
BcaC05g25956 Brassica carinata HOM05D003234 ORTHO05D003635 1.9e-29 132.9 73 100.0
A06p16500 Brassica napus HOM05D003234 ORTHO05D003635 1.9e-29 132.9 73 100.0
C05p19050 Brassica napus HOM05D003234 ORTHO05D003635 1.9e-29 132.9 73 100.0
BraA06t24756Z Brassica rapa HOM05D003234 ORTHO05D003635 1.9e-29 132.9 73 100.0
Carub.0001s1993 Capsella rubella HOM05D003234 ORTHO05D003635 1.9e-29 132.9 73 100.0
Thhalv10009165m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 1.9e-29 132.9 73 100.0
Sp1g18170 Schrenkiella parvula HOM05D003234 ORTHO05D003635 1.9e-29 132.9 73 100.0
BcaC08g47113 Brassica carinata HOM05D003234 ORTHO05D003635 9.5e-29 130.6 73 97.3
Sp5g31330 Schrenkiella parvula HOM05D003234 ORTHO05D003635 9.5e-29 130.6 73 97.3
THA.LOC104813762 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 9.5e-29 130.6 73 97.3
AT1G20460 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 1.2e-28 130.2 73 97.3
BNapus_Darmor_BZH_scaffold_170p00030 Brassica napus HOM05D003234 ORTHO05D003635 1.2e-28 130.2 73 98.6
Thhalv10019348m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 2.1e-28 129.4 73 95.9
Carub.0002s2308 Capsella rubella HOM05D003234 ORTHO05D003635 2.8e-28 129.0 73 95.9
CARHR020910 Cardamine hirsuta HOM05D003234 ORTHO05D003635 6.2e-28 127.9 75 97.3
Cpa.g.sc26.223 Carica papaya HOM05D003234 ORTHO05D003635 1.8e-27 126.3 73 93.2
AT1G76185 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 2.3e-27 125.9 73 93.2
THA.LOC104809745 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 3.1e-27 125.6 85 83.5
Cc10_g00860 Coffea canephora HOM05D003234 ORTHO05D003635 4.0e-27 125.2 73 93.2
Dinv31919 Davidia involucrata HOM05D003234 ORTHO05D003635 5.2e-27 124.8 73 90.4
Gohir.A05G180900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 6.8e-27 124.4 73 91.8
Gohir.D05G183900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 6.8e-27 124.4 73 91.8
Gorai.009G189400 Gossypium raimondii HOM05D003234 ORTHO05D003635 6.8e-27 124.4 73 91.8
Duzib041G0372 Durio zibethinus HOM05D003234 ORTHO05D003635 8.9e-27 124.0 73 90.4
Duzib093G1967 Durio zibethinus HOM05D003234 ORTHO05D003635 8.9e-27 124.0 73 90.4
Thecc.08G055600 Theobroma cacao HOM05D003234 ORTHO05D003635 8.9e-27 124.0 73 90.4
GSVIVG01008697001 Vitis vinifera HOM05D003234 ORTHO05D003635 2.0e-26 122.9 73 90.4
TWI12G0861 Tripterygium wilfordii HOM05D003234 ORTHO05D003635 2.6e-26 122.5 73 89.0
Duzib116G0672 Durio zibethinus HOM05D003234 ORTHO05D003635 3.4e-26 122.1 73 90.4
CANSAT25G0014 Cannabis sativa HOM05D003234 ORTHO05D003635 5.8e-26 121.3 73 87.7
CiPaw.07G140700 Carya illinoinensis HOM05D003234 ORTHO05D003635 7.6e-26 120.9 73 87.7
Manes.18G007200 Manihot esculenta HOM05D003234 ORTHO05D003635 7.6e-26 120.9 73 86.3
Potri.002G013000 Populus trichocarpa HOM05D003234 ORTHO05D003635 7.6e-26 120.9 73 86.3
Solyc12g094510.2 Solanum lycopersicum HOM05D003234 ORTHO05D003635 7.6e-26 120.9 73 89.0
Sopen12g031400 Solanum pennellii HOM05D003234 ORTHO05D003635 7.6e-26 120.9 73 89.0
PGSC0003DMG400029411 Solanum tuberosum HOM05D003234 ORTHO05D003635 7.6e-26 120.9 73 89.0
ClCG00G002880 Citrullus lanatus HOM05D003234 ORTHO05D003635 9.9e-26 120.6 73 86.3
ClCG08G009600 Citrullus lanatus HOM05D003234 ORTHO05D003635 9.9e-26 120.6 73 86.3
C06p32180 Brassica napus HOM05D003234 ORTHO05D003635 1.3e-25 120.2 73 91.8
Hma1.2p1_1260F.1_g271060 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 1.3e-25 120.2 73 89.0
Manes.05G140300 Manihot esculenta HOM05D003234 ORTHO05D003635 1.3e-25 120.2 73 89.0
Sed0016414 Sechium edule HOM05D003234 ORTHO05D003635 1.3e-25 120.2 73 86.3
Gohir.A02G083600 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.7e-25 119.8 73 89.0
Nitab4.5_0000337g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.7e-25 119.8 75 90.7
Nitab4.5_0002710g0120 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.7e-25 119.8 75 90.7
Nitab4.5_0007869g0020 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.7e-25 119.8 73 87.7
Prupe.1G356200 Prunus persica HOM05D003234 ORTHO05D003635 1.7e-25 119.8 73 87.7
BcaB02g07054 Brassica carinata HOM05D003234 ORTHO05D003635 2.2e-25 119.4 73 89.0
MELO3C026549.2 Cucumis melo HOM05D003234 ORTHO05D003635 2.2e-25 119.4 73 84.9
CsaV3_6G031700 Cucumis sativus L. HOM05D003234 ORTHO05D003635 2.2e-25 119.4 73 84.9
Nitab4.5_0000699g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 2.2e-25 119.4 73 86.3
arahy.Tifrunner.gnm1.ann1.G2HAI2 Arachis hypogaea HOM05D003234 ORTHO05D003635 2.9e-25 119.0 74 90.5
arahy.Tifrunner.gnm1.ann1.VFC9DI Arachis hypogaea HOM05D003234 ORTHO05D003635 2.9e-25 119.0 74 90.5
A07p28600 Brassica napus HOM05D003234 ORTHO05D003635 2.9e-25 119.0 73 90.4
A02p20490 Brassica napus HOM05D003234 ORTHO05D003635 3.7e-25 118.6 74 90.5
CAN.G208.7 Capsicum annuum HOM05D003234 ORTHO05D003635 3.7e-25 118.6 73 86.3
Gohir.A05G254800 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.7e-25 118.6 73 84.9
BraA02t07080Z Brassica rapa HOM05D003234 ORTHO05D003635 4.9e-25 118.2 75 89.3
Migut.N03196 Erythranthe guttata HOM05D003234 ORTHO05D003635 4.9e-25 118.2 73 86.3
Lj1g0024220 Lotus japonicus HOM05D003234 ORTHO05D003635 4.9e-25 118.2 74 89.2
Potri.005G248300 Populus trichocarpa HOM05D003234 ORTHO05D003635 4.9e-25 118.2 73 86.3
FvH4_2g37670 Fragaria vesca HOM05D003234 ORTHO05D003635 6.4e-25 117.9 73 86.3
FAN15G0717 Fragaria x ananassa HOM05D003234 ORTHO05D003635 6.4e-25 117.9 73 86.3
FAN20G3055 Fragaria x ananassa HOM05D003234 ORTHO05D003635 6.4e-25 117.9 73 86.3
Gohir.D02G099100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 6.4e-25 117.9 73 87.7
Gorai.005G112900 Gossypium raimondii HOM05D003234 ORTHO05D003635 6.4e-25 117.9 73 87.7
RcHm_v2.0_Chr6g0304061 Rosa chinensis HOM05D003234 ORTHO05D003635 6.4e-25 117.9 73 86.3
Sed0012631 Sechium edule HOM05D003234 ORTHO05D003635 6.4e-25 117.9 73 86.3
Ciclev10002915m.g Citrus clementina HOM05D003234 ORTHO05D003635 8.4e-25 117.5 75 84.0
vmacro04393 Vaccinium macrocarpon HOM05D003234 ORTHO05D003635 8.4e-25 117.5 84 76.2
VMungo1309G2978 Vigna mungo HOM05D003234 ORTHO05D003635 8.4e-25 117.5 74 87.8
FAN27G0038 Fragaria x ananassa HOM05D003234 ORTHO05D003635 1.1e-24 117.1 73 86.3
Gorai.009G267900 Gossypium raimondii HOM05D003234 ORTHO05D003635 1.1e-24 117.1 73 83.6
Actinidia37965 Actinidia chinensis HOM05D003234 ORTHO05D003635 1.4e-24 116.7 73 84.9
Gohir.D05G256400 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.4e-24 116.7 73 83.6
TPR.G38123 Trifolium pratense HOM05D003234 ORTHO05D003635 1.4e-24 116.7 74 87.8
MSTRG.22360 Avicennia marina HOM05D003234 ORTHO05D003635 1.9e-24 116.3 73 84.9
Glyma.06G019600 Glycine max HOM05D003234 ORTHO05D003635 1.9e-24 116.3 74 87.8
Phvul.009G021200 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 1.9e-24 116.3 74 86.5
SGA_v2.0_scaffold19G08601 Striga asiatica HOM05D003234 ORTHO05D003635 1.9e-24 116.3 73 83.6
C02p33350 Brassica napus HOM05D003234 ORTHO05D003635 2.4e-24 115.9 75 88.0
Medtr3g115080 Medicago truncatula HOM05D003234 ORTHO05D003635 2.4e-24 115.9 75 86.7
Peaxi162Scf00400g00314 Petunia axillaris HOM05D003234 ORTHO05D003635 2.4e-24 115.9 76 85.5
PGR031G2527 Punica granatum HOM05D003234 ORTHO05D003635 2.4e-24 115.9 74 85.1
SalBow6G3231 Salvia bowleyana HOM05D003234 ORTHO05D003635 2.4e-24 115.9 72 84.7
BcaC03g15650 Brassica carinata HOM05D003234 ORTHO05D003635 3.2e-24 115.5 77 85.7
Glyma.04G019300 Glycine max HOM05D003234 ORTHO05D003635 4.1e-24 115.2 74 86.5
MD08G1004300 Malus domestica HOM05D003234 ORTHO05D003635 4.1e-24 115.2 74 86.5
Psat0s3811g0040 Pisum sativum HOM05D003234 ORTHO05D003635 4.1e-24 115.2 74 85.1
ECA233G0660 Erigeron canadensis HOM05D003234 ORTHO05D003635 7.1e-24 114.4 89 70.8
CiPaw.08G071600 Carya illinoinensis HOM05D003234 ORTHO05D003635 9.2e-24 114.0 74 85.1
Eucgr.F03542 Eucalyptus grandis HOM05D003234 ORTHO05D003635 1.2e-23 113.6 73 84.9
BraA07t30501Z Brassica rapa HOM05D003234 ORTHO05D003635 2.1e-23 112.8 73 89.0
Nitab4.5_0000588g0270 Nicotiana tabacum HOM05D003234 ORTHO05D003635 2.1e-23 112.8 73 84.9
MD15G1003700 Malus domestica HOM05D003234 ORTHO05D003635 2.7e-23 112.5 74 83.8
unitig_21.g20148 Utricularia gibba HOM05D003234 ORTHO05D003635 6.0e-23 111.3 73 82.2
Lsat_1_v5_gn_8_27741 Lactuca sativa HOM05D003234 ORTHO05D003635 1.3e-22 110.2 70 82.9
Hund05127 Selenicereus undatus HOM05D003234 ORTHO05D003635 1.7e-22 109.8 73 80.8
Oeu011320.1 Olea europaea HOM05D003234 ORTHO05D003635 2.3e-22 109.4 73 80.8
Nn6g31830 Nelumbo nucifera HOM05D003234 ORTHO05D003635 3.0e-22 109.0 74 79.7
HanXRQChr12g0366591 Helianthus annuus HOM05D003234 ORTHO05D003635 5.1e-22 108.2 84 72.6
Migut.C00924 Erythranthe guttata HOM05D003234 ORTHO05D003635 6.6e-22 107.8 73 76.7
Lalb_Chr19g0131711 Lupinus albus HOM05D003234 ORTHO05D003635 1.1e-21 107.1 73 78.1
Rhsim06G0008900 Rhododendron simsii HOM05D003234 ORTHO05D003635 1.1e-21 107.1 73 78.1
Sc02g0009000 Simmondsia chinensis HOM05D003234 ORTHO05D003635 1.1e-21 107.1 73 78.1
PGSC0003DMG401009896 Solanum tuberosum HOM05D003234 ORTHO05D003635 1.1e-21 107.1 79 78.5
EL10Ac1g02011 Beta vulgaris HOM05D003234 ORTHO05D003635 1.9e-21 106.3 73 78.1
QL02p013773 Quercus lobata HOM05D003234 ORTHO05D003635 1.9e-21 106.3 97 66.0
Solyc04g082210.3 Solanum lycopersicum HOM05D003234 ORTHO05D003635 1.9e-21 106.3 77 80.5
Sopen04g035840 Solanum pennellii HOM05D003234 ORTHO05D003635 1.9e-21 106.3 77 80.5
MSTRG.1123 Avicennia marina HOM05D003234 ORTHO05D003635 4.3e-21 105.1 73 72.6
Actinidia15481 Actinidia chinensis HOM05D003234 ORTHO05D003635 5.6e-21 104.8 73 79.5
CAN.G311.99 Capsicum annuum HOM05D003234 ORTHO05D003635 7.3e-21 104.4 75 78.7
Lsat_1_v5_gn_5_39760 Lactuca sativa HOM05D003234 ORTHO05D003635 7.3e-21 104.4 72 76.4
MSTRG.25294 Avicennia marina HOM05D003234 ORTHO05D003635 1.6e-20 103.2 73 72.6
SGA_v2.0_scaffold275G46578 Striga asiatica HOM05D003234 ORTHO05D003635 2.1e-20 102.8 85 70.6
Peaxi162Scf01481g00038 Petunia axillaris HOM05D003234 ORTHO05D003635 2.8e-20 102.4 75 76.0
Aqoxy5G01058 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 8.1e-20 100.9 76 77.6
SHI08007 Sapria himalayana HOM05D003234 ORTHO05D003635 8.1e-20 100.9 82 72.0
Lalb_Chr08g0246351 Lupinus albus HOM05D003234 ORTHO05D003635 1.4e-19 100.1 92 65.2
PSO170G0681 Papaver somniferum HOM05D003234 ORTHO05D003635 1.8e-19 99.8 74 75.7
Lalb_Chr01g0008381 Lupinus albus HOM05D003234 ORTHO05D003635 3.1e-19 99.0 74 79.7
unitig_744.g24608 Utricularia gibba HOM05D003234 ORTHO05D003635 6.8e-19 97.8 75 72.0
Lalb_Chr11g0061721 Lupinus albus HOM05D003234 ORTHO05D003635 2.0e-18 96.3 80 70.0
MBI05_g27809_MAGBIO Magnolia biondii HOM05D003234 ORTHO05D003635 2.6e-18 95.9 73 78.1
PSO210G7820 Papaver somniferum HOM05D003234 ORTHO05D003635 2.6e-18 95.9 66 78.8
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 5.8e-18 94.7 73 68.5
CDE02G2075 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 1.3e-17 93.6 73 69.9
TAR628G0584 Trochodendron aralioides HOM05D003234 ORTHO05D003635 1.4e-16 90.1 73 75.3
vmacro21831 Vaccinium macrocarpon HOM05D003234 ORTHO05D003635 9.3e-16 87.4 113 51.3
HanXRQChr14g0428701 Helianthus annuus HOM05D003234 ORTHO05D003635 1.7e-14 83.2 86 55.8
Sabra05G0191800 Salix brachista HOM05D003234 ORTHO05D003635 3.3e-13 79.0 166 38.0
CSS0034652 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 7.3e-13 77.8 73 64.4
BcaC08g45540 Brassica carinata HOM05D003234 ORTHO05D003635 1.5e-10 70.1 105 49.5
BolC6t38341H Brassica oleracea HOM05D003234 ORTHO05D003635 1.5e-10 70.1 105 49.5
COL.COLO4_21608 Corchorus olitorius HOM05D003234 ORTHO05D003635 1.5e-10 70.1 38 89.5
Rhsim07G0254000 Rhododendron simsii HOM05D003234 ORTHO05D003635 2.0e-10 69.7 38 89.5
TAR376G0434 Trochodendron aralioides HOM05D003234 ORTHO05D003635 2.0e-10 69.7 55 76.4
SEGI_02230 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 9.9e-10 67.4 71 52.1
SEGI_11040 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 9.9e-10 67.4 71 52.1
CDE09G0257 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 2.2e-09 66.2 71 56.3
ATR0733G120 Amborella trichopoda HOM05D003234 ORTHO05D003635 8.4e-09 64.3 73 50.7
CDE04G0975 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 3.2e-08 62.4 65 50.8
Ah.00g000460 Amaranthus hybridus HOM05D003234 ORTHO05D003635 5.4e-08 61.6 36 83.3
Aqoxy5G01648 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 7.1e-08 61.2 73 47.9
MSTRG.23532 Avicennia marina HOM05D003234 ORTHO05D003635 7.1e-08 61.2 73 46.6
CARHR069740 Cardamine hirsuta HOM05D003234 ORTHO05D003635 7.1e-08 61.2 36 91.7
Peaxi162Scf00064g01012 Petunia axillaris HOM05D003234 ORTHO05D003635 3.5e-07 58.9 36 88.9
BolC2t09366H Brassica oleracea HOM05D003234 ORTHO05D003635 6.0e-07 58.2 32 87.5
Manes.01G134700 Manihot esculenta HOM05D003234 ORTHO05D003635 2.3e-06 56.2 73 45.2
CANSAT01G1184 Cannabis sativa HOM05D003234 ORTHO05D003635 3.9e-06 55.5 73 46.6
arahy.Tifrunner.gnm1.ann1.F5AS58 Arachis hypogaea HOM05D003234 ORTHO05D003635 6.6e-06 54.7 73 46.6
arahy.Tifrunner.gnm1.ann1.WI3JHU Arachis hypogaea HOM05D003234 ORTHO05D003635 6.6e-06 54.7 73 46.6


User provided reference genes

Program Settings