Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 3681.7 1880 100.0
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 3679.8 1880 99.9
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 3662.5 1881 99.6
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 3610.8 1881 98.1
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 3597.0 1882 97.7
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 3328.9 1886 90.7
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 3179.4 1894 85.7
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 3147.5 1900 84.9
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 3045.4 1901 82.3
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 3037.7 1905 82.4
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 3018.0 1902 81.9
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 3004.2 1903 81.8
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 2857.8 1905 77.7
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 2512.6 1924 69.4
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 1714.9 1956 50.2
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 1699.9 1992 49.9
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1693.3 2014 49.1
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 1692.9 2013 49.6
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1690.6 2010 48.7
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 1678.7 2049 48.3
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 1674.8 2004 49.2
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1673.3 1984 49.4
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 1672.9 2002 48.8
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1671.4 2015 48.2
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1670.6 1997 49.3
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1669.8 2013 48.9
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 1669.1 2024 48.8
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 1668.3 2022 49.1
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 1654.4 2010 48.3
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1654.0 2026 48.5
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1644.4 2015 48.4
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1629.8 1979 48.6
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1623.6 2000 48.0
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1619.8 2000 48.2
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1619.4 2027 47.1
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1618.6 2016 47.5
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1618.2 2042 47.5
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1605.5 2033 47.5
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1592.4 2019 46.7
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1589.3 2036 46.6
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1585.5 2013 47.7
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1584.3 2025 46.5
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 1579.7 2018 46.5
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 1565.4 2041 46.0
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1562.4 2008 46.4
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 1558.5 2035 46.4
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1558.1 1980 47.1
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1557.7 2014 46.4
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1546.6 2016 45.8
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1541.9 2009 46.0
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1523.8 2000 45.6
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1523.8 1993 45.9
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1523.1 2003 45.6
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1509.6 1987 45.2
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1507.7 2004 45.6
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1502.6 1993 45.2
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1501.5 2051 44.6
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1492.6 1991 45.6
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1489.6 1992 44.8
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1487.6 2015 44.7
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1484.2 2035 45.3
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1481.5 1987 45.1
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1473.4 2013 45.3
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1453.3 2006 44.8
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1428.3 2018 43.6
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1424.8 1998 43.6
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1421.0 2010 43.9
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1414.8 2029 42.7
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1414.4 2004 43.3
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1404.4 1912 44.5
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1400.2 2039 43.4
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1395.6 2023 43.3
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1391.7 2023 43.2
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1390.9 1923 44.5
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1389.0 2021 43.0
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1385.5 1921 44.2
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1357.4 1885 43.5
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1352.0 2009 41.7
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1351.7 2059 42.2
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1351.3 2003 41.8
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1331.6 1895 42.6
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1326.6 2132 40.1
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1321.2 1936 43.0
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1300.8 1917 42.3
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1267.7 1999 41.4
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1239.9 1934 41.7
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1225.3 1718 43.6
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1213.7 1720 43.7
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1211.1 1458 48.1
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1201.0 1462 48.0
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1167.9 1957 39.6
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1143.3 1780 41.9
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1139.4 2079 37.3
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 5.3e-308 1062.0 1729 39.5
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 2.8e-293 1013.1 1978 34.1
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 6.6e-258 895.6 2099 32.8
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 2.6e-254 883.6 1649 37.6
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 2.7e-251 873.6 1167 45.2
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 1.4e-228 798.1 1454 36.0
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 4.2e-228 796.6 2155 31.2
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.7e-221 774.6 1652 33.4
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 2.2e-197 694.5 2059 28.8
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 7.5e-185 652.9 1940 29.8
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 7.7e-174 616.3 677 52.1
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 1.7e-160 572.0 1807 27.5
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 3.4e-145 521.2 1671 27.6
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 1.2e-142 512.7 1172 33.9
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 4.9e-136 490.7 439 58.3
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 6.9e-130 470.3 393 59.0
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 1.3e-123 449.5 348 67.2
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 3.7e-115 421.4 379 54.1
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 4.8e-107 394.4 288 68.4
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 3.9e-101 374.8 352 56.8
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 2.4e-98 365.5 435 49.4
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 1.7e-96 359.4 274 65.3
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.5e-84 319.7 1100 27.4
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 1.2e-73 283.5 198 68.7
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 2.7e-65 255.8 244 59.0
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 1.9e-63 249.6 496 36.9
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 1.6e-62 246.5 365 39.2
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 7.0e-50 204.5 217 54.4
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 3.1e-45 189.1 176 54.5
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 9.8e-44 184.1 494 27.9
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 8.6e-40 171.0 183 52.5
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 4.9e-35 155.2 173 50.9
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 8.3e-35 154.5 297 36.7
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 4.9e-27 128.6 213 36.6
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 1.1e-26 127.5 83 67.5
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 7.1e-26 124.8 599 24.0
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 2.8e-22 112.8 392 25.8
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 4.0e-21 109.0 53 100.0
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 1.2e-20 107.5 67 79.1
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 1.2e-20 107.5 67 79.1
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 1.7e-19 103.6 258 28.7
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 8.4e-19 101.3 59 83.1
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-17 97.4 105 46.7
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 1.2e-17 97.4 71 70.4
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 4.6e-17 95.5 68 67.6
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 5.1e-16 92.0 62 71.0
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 3.3e-15 89.4 99 45.5
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 1.6e-14 87.0 126 41.3
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 4.0e-13 82.4 57 71.9
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 9.6e-07 61.2 55 52.7
Migut.B00337 Erythranthe guttata HOM05D005412 ORTHO05D006096 6.2e-06 58.5 83 43.4


User provided reference genes

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