Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g11887 Brassica carinata HOM05D005828 ORTHO05D006822 4.6e-64 247.7 120 100.0
BcaNung06770 Brassica carinata HOM05D005828 ORTHO05D006822 4.6e-64 247.7 120 100.0
BcaNung06341 Brassica carinata HOM05D005828 ORTHO05D006822 1.6e-27 126.3 61 100.0
BcaC07g42575 Brassica carinata HOM05D005828 ORTHO05D006822 3.7e-13 78.6 48 79.2
BcaB03g14247 Brassica carinata HOM05D005828 ORTHO05D006822 4.1e-12 75.1 48 77.1
BcaB07g32190 Brassica carinata HOM05D005828 ORTHO05D006822 4.1e-12 75.1 48 77.1
BcaC05g26118 Brassica carinata HOM05D005828 ORTHO05D006822 4.1e-12 75.1 48 77.1
BcaC05g26120 Brassica carinata HOM05D005828 ORTHO05D006822 4.1e-12 75.1 48 77.1
BcaC06g34917 Brassica carinata HOM05D005828 ORTHO05D006822 4.1e-12 75.1 48 77.1
A07p14860 Brassica napus HOM05D005828 ORTHO05D006822 4.1e-12 75.1 48 77.1
C05p20980 Brassica napus HOM05D005828 ORTHO05D006822 4.1e-12 75.1 48 77.1
C07p21820 Brassica napus HOM05D005828 ORTHO05D006822 4.1e-12 75.1 48 77.1
BolC5t30796H Brassica oleracea HOM05D005828 ORTHO05D006822 4.1e-12 75.1 48 77.1
BolC7t42713H Brassica oleracea HOM05D005828 ORTHO05D006822 4.1e-12 75.1 48 77.1
Sp1g19470 Schrenkiella parvula HOM05D005828 ORTHO05D006822 4.1e-12 75.1 48 77.1
A09p42800 Brassica napus HOM05D005828 ORTHO05D006822 9.1e-12 73.9 48 75.0
BraA09t39754Z Brassica rapa HOM05D005828 ORTHO05D006822 9.1e-12 73.9 48 75.0
Aa31LG7G5940 Aethionema arabicum HOM05D005828 ORTHO05D006822 1.2e-11 73.6 48 75.0
AL1G35150 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 1.2e-11 73.6 48 75.0
AL1G35290 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 1.2e-11 73.6 48 75.0
AT1G21930 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 1.2e-11 73.6 48 75.0
AT3G42150 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 1.2e-11 73.6 48 75.0
Carub.0001s2142 Capsella rubella HOM05D005828 ORTHO05D006822 1.2e-11 73.6 48 75.0
Thhalv10009188m.g Eutrema salsugineum HOM05D005828 ORTHO05D006822 1.2e-11 73.6 48 75.0
BcaB07g32192 Brassica carinata HOM05D005828 ORTHO05D006822 1.3e-10 70.1 48 70.8
CARHR022310 Cardamine hirsuta HOM05D005828 ORTHO05D006822 1.3e-10 70.1 48 70.8
Eucgr.F03768 Eucalyptus grandis HOM05D005828 ORTHO05D006822 5.0e-10 68.2 48 66.7
Psat2g078520 Pisum sativum HOM05D005828 ORTHO05D006822 5.0e-10 68.2 48 66.7
FvH4_2g26520 Fragaria vesca HOM05D005828 ORTHO05D006822 8.6e-10 67.4 48 66.7
FAN24G3109 Fragaria x ananassa HOM05D005828 ORTHO05D006822 8.6e-10 67.4 48 66.7
FAN27G1656 Fragaria x ananassa HOM05D005828 ORTHO05D006822 8.6e-10 67.4 48 66.7
RcHm_v2.0_Chr6g0295391 Rosa chinensis HOM05D005828 ORTHO05D006822 8.6e-10 67.4 48 66.7
FAN15G3227 Fragaria x ananassa HOM05D005828 ORTHO05D006822 1.1e-09 67.0 46 69.6
PSO170G1674 Papaver somniferum HOM05D005828 ORTHO05D006822 1.5e-09 66.6 48 66.7
THA.LOC104810143 Tarenaya hassleriana HOM05D005828 ORTHO05D006822 1.5e-09 66.6 48 68.8
CSS0009962 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 1.9e-09 66.2 63 52.4
Peaxi162Scf00241g00022 Petunia axillaris HOM05D005828 ORTHO05D006822 1.9e-09 66.2 48 64.6
unitig_22.g6732 Utricularia gibba HOM05D005828 ORTHO05D006822 1.9e-09 66.2 48 62.5
Lalb_Chr04g0253341 Lupinus albus HOM05D005828 ORTHO05D006822 2.5e-09 65.9 48 64.6
Nitab4.5_0010023g0030 Nicotiana tabacum HOM05D005828 ORTHO05D006822 2.5e-09 65.9 48 62.5
Potri.002G086300 Populus trichocarpa HOM05D005828 ORTHO05D006822 2.5e-09 65.9 48 64.6
TWI56G1238 Tripterygium wilfordii HOM05D005828 ORTHO05D006822 3.3e-09 65.5 48 64.6
Aqoxy6G00155 Aquilegia oxysepala HOM05D005828 ORTHO05D006822 4.2e-09 65.1 48 64.6
MD08G1168000 Malus domestica HOM05D005828 ORTHO05D006822 4.2e-09 65.1 48 64.6
Zm00001eb318220 Zea mays HOM05D005828 ORTHO05D006822 4.2e-09 65.1 48 64.6
BolC5t30794H Brassica oleracea HOM05D005828 ORTHO05D006822 5.5e-09 64.7 42 78.6
MD15G1353400 Malus domestica HOM05D005828 ORTHO05D006822 5.5e-09 64.7 46 67.4
Manes.18G074748 Manihot esculenta HOM05D005828 ORTHO05D006822 5.5e-09 64.7 48 64.6
Rhsim02G0128100 Rhododendron simsii HOM05D005828 ORTHO05D006822 5.5e-09 64.7 48 64.6
Rhsim10G0081200 Rhododendron simsii HOM05D005828 ORTHO05D006822 5.5e-09 64.7 48 64.6
RhsimUnG0054200 Rhododendron simsii HOM05D005828 ORTHO05D006822 5.5e-09 64.7 48 64.6
Ah.01g019990 Amaranthus hybridus HOM05D005828 ORTHO05D006822 7.2e-09 64.3 48 64.6
EL10Ac9g21807 Beta vulgaris HOM05D005828 ORTHO05D006822 7.2e-09 64.3 48 64.6
PSO528G0081 Papaver somniferum HOM05D005828 ORTHO05D006822 7.2e-09 64.3 48 64.6
Haze_00481 Corylus avellana HOM05D005828 ORTHO05D006822 9.5e-09 63.9 58 56.9
Migut.C01150 Erythranthe guttata HOM05D005828 ORTHO05D006822 9.5e-09 63.9 48 64.6
Migut.G00970 Erythranthe guttata HOM05D005828 ORTHO05D006822 9.5e-09 63.9 48 64.6
Migut.K01196 Erythranthe guttata HOM05D005828 ORTHO05D006822 9.5e-09 63.9 48 64.6
Prupe.1G501700 Prunus persica HOM05D005828 ORTHO05D006822 9.5e-09 63.9 48 62.5
CSS0005937 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 1.2e-08 63.5 48 62.5
Lj1g0023360 Lotus japonicus HOM05D005828 ORTHO05D006822 1.2e-08 63.5 48 62.5
Nitab4.5_0002816g0110 Nicotiana tabacum HOM05D005828 ORTHO05D006822 1.2e-08 63.5 48 62.5
Os12g0481200 Oryza sativa ssp. japonica HOM05D005828 ORTHO05D006822 1.2e-08 63.5 48 62.5
Hund16842 Selenicereus undatus HOM05D005828 ORTHO05D006822 1.2e-08 63.5 48 62.5
AUR62011415 Chenopodium quinoa HOM05D005828 ORTHO05D006822 1.6e-08 63.2 48 62.5
AUR62016643 Chenopodium quinoa HOM05D005828 ORTHO05D006822 1.6e-08 63.2 48 62.5
AUR62022881 Chenopodium quinoa HOM05D005828 ORTHO05D006822 1.6e-08 63.2 48 62.5
MBI11_g22242_MAGBIO Magnolia biondii HOM05D005828 ORTHO05D006822 1.6e-08 63.2 48 60.4
Sed0016516 Sechium edule HOM05D005828 ORTHO05D006822 1.6e-08 63.2 48 62.5
Sc01g0001360 Simmondsia chinensis HOM05D005828 ORTHO05D006822 1.6e-08 63.2 48 60.4
CANSAT64G1100 Cannabis sativa HOM05D005828 ORTHO05D006822 2.1e-08 62.8 48 62.5
Ca_03724_v3 Cicer arietinum L. HOM05D005828 ORTHO05D006822 2.1e-08 62.8 48 62.5
Hma1.2p1_0248F.1_g102070 Hydrangea macrophylla HOM05D005828 ORTHO05D006822 2.1e-08 62.8 48 62.5
Medtr5g059050 Medicago truncatula HOM05D005828 ORTHO05D006822 2.1e-08 62.8 48 62.5
Phvul.008G165500 Phaseolus vulgaris HOM05D005828 ORTHO05D006822 2.1e-08 62.8 48 62.5
PGR042G1795 Punica granatum HOM05D005828 ORTHO05D006822 2.1e-08 62.8 48 60.4
QL09p036513 Quercus lobata HOM05D005828 ORTHO05D006822 2.1e-08 62.8 48 62.5
TPR.G8500 Trifolium pratense HOM05D005828 ORTHO05D006822 2.1e-08 62.8 48 62.5
Actinidia23063 Actinidia chinensis HOM05D005828 ORTHO05D006822 2.8e-08 62.4 48 60.4
CDE01G0185 Ceratophyllum demersum HOM05D005828 ORTHO05D006822 2.8e-08 62.4 47 59.6
ECA246G1275 Erigeron canadensis HOM05D005828 ORTHO05D006822 2.8e-08 62.4 48 60.4
vmacro15901 Vaccinium macrocarpon HOM05D005828 ORTHO05D006822 2.8e-08 62.4 48 60.4
ATR0021G028 Amborella trichopoda HOM05D005828 ORTHO05D006822 3.6e-08 62.0 48 60.4
Lsat_1_v5_gn_9_83901 Lactuca sativa HOM05D005828 ORTHO05D006822 3.6e-08 62.0 48 60.4
Sabra02G0067700 Salix brachista HOM05D005828 ORTHO05D006822 3.6e-08 62.0 48 60.4
Ciclev10002958m.g Citrus clementina HOM05D005828 ORTHO05D006822 4.7e-08 61.6 48 62.5
SalBow1G4500 Salvia bowleyana HOM05D005828 ORTHO05D006822 4.7e-08 61.6 48 60.4
SGA_v2.0_scaffold52G18982 Striga asiatica HOM05D005828 ORTHO05D006822 4.7e-08 61.6 48 58.3
Atru.chr13.1407 Acer truncatum HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
arahy.Tifrunner.gnm1.ann1.IQQ61N Arachis hypogaea HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
CAN.G48.25 Capsicum annuum HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
Cpa.g.sc70.13 Carica papaya HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
CiPaw.02G169200 Carya illinoinensis HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
ClCG11G015600 Citrullus lanatus HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
Cc10_g15090 Coffea canephora HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
MELO3C010460.2 Cucumis melo HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
CsaV3_4G028420 Cucumis sativus L. HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
DCAR_014096 Daucus carota HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 58.3
DCAR_014107 Daucus carota HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 58.3
Dinv40388 Davidia involucrata HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
Duzib041G0320 Durio zibethinus HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
Glyma.13G081900 Glycine max HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
Glyma.14G162800 Glycine max HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
Gohir.A06G042500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
Gohir.D06G043500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
Gorai.010G048600 Gossypium raimondii HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
HanXRQChr12g0379421 Helianthus annuus HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 58.3
Oeu050902.1 Olea europaea HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
Solyc03g093220.3 Solanum lycopersicum HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
Sopen03g024020 Solanum pennellii HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
PGSC0003DMG400014827 Solanum tuberosum HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
Thecc.08G121200 Theobroma cacao HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
HPP92_010723 Vanilla planifolia HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
GSVIVG01013096001 Vitis vinifera HOM05D005828 ORTHO05D006822 6.1e-08 61.2 48 60.4
Duzib093G2142 Durio zibethinus HOM05D005828 ORTHO05D006822 8.0e-08 60.8 48 60.4
TAR628G1302 Trochodendron aralioides HOM05D005828 ORTHO05D006822 8.0e-08 60.8 48 58.3
Nn1g08691 Nelumbo nucifera HOM05D005828 ORTHO05D006822 1.4e-07 60.1 48 58.3
QL09p035324 Quercus lobata HOM05D005828 ORTHO05D006822 1.4e-07 60.1 48 60.4
Nn7g37602 Nelumbo nucifera HOM05D005828 ORTHO05D006822 1.2e-06 57.0 48 56.2
Dinv27340 Davidia involucrata HOM05D005828 ORTHO05D006822 1.5e-06 56.6 45 57.8
SEGI_28823 Sequoiadendron giganteum HOM05D005828 ORTHO05D006822 1.5e-06 56.6 45 57.8
HPP92_010646 Vanilla planifolia HOM05D005828 ORTHO05D006822 5.7e-06 54.7 48 54.2


User provided reference genes

Program Settings