Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06495 Brassica carinata HOM05D000015 ORTHO05D093875 7.8e-49 196.8 100 100.0
A10p15480 Brassica napus HOM05D000015 ORTHO05D000270 7.8e-33 143.7 100 77.0
BraA10t43687Z Brassica rapa HOM05D000015 ORTHO05D000270 7.8e-33 143.7 100 77.0
BolC9t57957H Brassica oleracea HOM05D000015 ORTHO05D000270 3.9e-32 141.4 100 76.0
Sp6g20520 Schrenkiella parvula HOM05D000015 ORTHO05D000270 3.8e-27 124.8 100 66.0
AL8G35580 Arabidopsis lyrata HOM05D000015 ORTHO05D000270 6.0e-17 90.9 103 50.5
Aa31LG1G12040 Aethionema arabicum HOM05D000015 ORTHO05D000270 7.9e-17 90.5 102 52.0
Aa31sc23G520 Aethionema arabicum HOM05D000015 ORTHO05D000270 2.1e-14 82.4 102 48.0
AL8G35600 Arabidopsis lyrata HOM05D000015 ORTHO05D000270 2.1e-14 82.4 100 49.0
AT5G59100 Arabidopsis thaliana HOM05D000015 ORTHO05D000270 2.8e-14 82.0 100 49.0
Aa31LG10G12920 Aethionema arabicum HOM05D000015 ORTHO05D000270 3.7e-14 81.6 101 49.5
AT3G46850 Arabidopsis thaliana HOM05D000015 ORTHO05D000270 3.7e-14 81.6 100 46.0
Aa31sc55G80 Aethionema arabicum HOM05D000015 ORTHO05D000270 4.8e-14 81.3 102 49.0
CARHR155420 Cardamine hirsuta HOM05D000015 ORTHO05D000270 4.8e-14 81.3 100 46.0
Aa31LG8G12990 Aethionema arabicum HOM05D000015 ORTHO05D000270 6.2e-14 80.9 102 52.0
Sp6g20870 Schrenkiella parvula HOM05D000015 ORTHO05D000270 6.2e-14 80.9 100 47.0
C03p13930 Brassica napus HOM05D000015 ORTHO05D000270 8.1e-14 80.5 99 47.5
BolC3t13841H Brassica oleracea HOM05D000015 ORTHO05D000270 1.1e-13 80.1 99 47.5
BraA03t10498Z Brassica rapa HOM05D000015 ORTHO05D000270 1.1e-13 80.1 99 47.5
Carub.0008s1984 Capsella rubella HOM05D000015 ORTHO05D000270 1.8e-13 79.3 100 48.0
CARHR285410 Cardamine hirsuta HOM05D000015 ORTHO05D000270 1.8e-13 79.3 99 47.5
BcaB01g04605 Brassica carinata HOM05D000015 ORTHO05D000270 2.4e-13 79.0 99 46.5
A03p11860 Brassica napus HOM05D000015 ORTHO05D000270 2.4e-13 79.0 99 46.5
BcaB08g36281 Brassica carinata HOM05D000015 ORTHO05D000270 5.3e-13 77.8 100 46.0
BcaC04g19810 Brassica carinata HOM05D000015 ORTHO05D000270 6.9e-13 77.4 100 44.0
C09p51430 Brassica napus HOM05D000015 ORTHO05D000270 6.9e-13 77.4 100 44.0
BolC9t58003H Brassica oleracea HOM05D000015 ORTHO05D000270 6.9e-13 77.4 100 44.0
CARHR272750 Cardamine hirsuta HOM05D000015 ORTHO05D000270 6.9e-13 77.4 98 48.0
Thhalv10012780m.g Eutrema salsugineum HOM05D000015 ORTHO05D000270 6.9e-13 77.4 100 48.0
AL5G25850 Arabidopsis lyrata HOM05D000015 ORTHO05D000270 1.2e-12 76.6 100 46.0
AL48U10010 Arabidopsis lyrata HOM05D000015 ORTHO05D000270 1.5e-12 76.3 100 46.0
BraA10t43724Z Brassica rapa HOM05D000015 ORTHO05D000270 1.5e-12 76.3 100 44.0
Carub.0008s1985 Capsella rubella HOM05D000015 ORTHO05D000270 1.5e-12 76.3 100 45.0
Carub.0008s1983 Capsella rubella HOM05D000015 ORTHO05D000270 2.0e-12 75.9 100 44.0
Thhalv10015507m.g Eutrema salsugineum HOM05D000015 ORTHO05D000270 2.0e-12 75.9 100 44.0
AL5G25860 Arabidopsis lyrata HOM05D000015 ORTHO05D000270 2.6e-12 75.5 100 45.0
AT5G59120 Arabidopsis thaliana HOM05D000015 ORTHO05D000270 3.4e-12 75.1 101 45.5
Thhalv10010149m.g Eutrema salsugineum HOM05D000015 ORTHO05D000270 3.4e-12 75.1 100 44.0
Aa31sc23G510 Aethionema arabicum HOM05D000015 ORTHO05D000270 4.5e-12 74.7 71 56.3
BcaC03g15853 Brassica carinata HOM05D000015 ORTHO05D000270 4.5e-12 74.7 94 48.9
Aa31LG1G11780 Aethionema arabicum HOM05D000015 ORTHO05D000270 5.8e-12 74.3 101 43.6
AT3G46840 Arabidopsis thaliana HOM05D000015 ORTHO05D000270 5.8e-12 74.3 99 43.4
A10p16370 Brassica napus HOM05D000015 ORTHO05D000270 5.8e-12 74.3 100 44.0
AT5G59090 Arabidopsis thaliana HOM05D000015 ORTHO05D000270 7.6e-12 73.9 100 44.0
Carub.0005s1307 Capsella rubella HOM05D000015 ORTHO05D000270 7.6e-12 73.9 100 44.0
Aa31sc23G470 Aethionema arabicum HOM05D000015 ORTHO05D000270 1.3e-11 73.2 101 41.6
Aa31sc23G490 Aethionema arabicum HOM05D000015 ORTHO05D000270 1.3e-11 73.2 100 43.0
C02p35990 Brassica napus HOM05D000015 ORTHO05D000270 1.3e-11 73.2 94 47.9
BolC2t09615H Brassica oleracea HOM05D000015 ORTHO05D000270 1.3e-11 73.2 94 47.9
AL8G35570 Arabidopsis lyrata HOM05D000015 ORTHO05D000270 1.7e-11 72.8 101 44.6
Sp5g14890 Schrenkiella parvula HOM05D000015 ORTHO05D000270 1.7e-11 72.8 100 43.0
AL285U10010 Arabidopsis lyrata HOM05D000015 ORTHO05D000270 2.2e-11 72.4 94 50.0
AL8G35130 Arabidopsis lyrata HOM05D000015 ORTHO05D000270 2.2e-11 72.4 94 50.0
AT5G58830 Arabidopsis thaliana HOM05D000015 ORTHO05D000270 2.2e-11 72.4 94 48.9
CARHR285530 Cardamine hirsuta HOM05D000015 ORTHO05D000270 2.2e-11 72.4 100 44.0
Sp6g20860 Schrenkiella parvula HOM05D000015 ORTHO05D000270 2.9e-11 72.0 99 45.5
BolC3t13840H Brassica oleracea HOM05D000015 ORTHO05D000270 4.9e-11 71.2 100 44.0
BraA03t10497Z Brassica rapa HOM05D000015 ORTHO05D000270 4.9e-11 71.2 100 44.0
Carub.0008s1982 Capsella rubella HOM05D000015 ORTHO05D000270 4.9e-11 71.2 99 44.4
CARHR285480 Cardamine hirsuta HOM05D000015 ORTHO05D000270 4.9e-11 71.2 100 41.0
Prupe.2G033100 Prunus persica HOM05D000015 ORTHO05D000270 4.9e-11 71.2 100 45.0
Aa31LG9G6200 Aethionema arabicum HOM05D000015 ORTHO05D000270 1.1e-10 70.1 103 42.7
Sp6g20510 Schrenkiella parvula HOM05D000015 ORTHO05D000270 1.1e-10 70.1 92 50.0
BcaB02g10709 Brassica carinata HOM05D000015 ORTHO05D000270 1.9e-10 69.3 100 40.0
Thhalv10015822m.g Eutrema salsugineum HOM05D000015 ORTHO05D000270 1.9e-10 69.3 97 40.2
Thhalv10015939m.g Eutrema salsugineum HOM05D000015 ORTHO05D000270 1.9e-10 69.3 93 45.2
THA.LOC104799419 Tarenaya hassleriana HOM05D000015 ORTHO05D000270 1.9e-10 69.3 101 38.6
A02p07480 Brassica napus HOM05D000015 ORTHO05D000270 2.5e-10 68.9 94 46.8
BcaB01g00965 Brassica carinata HOM05D000015 ORTHO05D000270 3.2e-10 68.6 100 39.0
BcaB01g04603 Brassica carinata HOM05D000015 ORTHO05D000270 3.2e-10 68.6 100 42.0
AL48U10040 Arabidopsis lyrata HOM05D000015 ORTHO05D000270 4.2e-10 68.2 99 43.4
AL8G35560 Arabidopsis lyrata HOM05D000015 ORTHO05D000270 4.2e-10 68.2 99 43.4
AT5G58820 Arabidopsis thaliana HOM05D000015 ORTHO05D000270 5.5e-10 67.8 94 46.8
BcaC06g31166 Brassica carinata HOM05D000015 ORTHO05D000270 5.5e-10 67.8 94 44.7
Carub.0008s1946 Capsella rubella HOM05D000015 ORTHO05D000270 5.5e-10 67.8 92 50.0
BraA06t25148Z Brassica rapa HOM05D000015 ORTHO05D000270 7.1e-10 67.4 100 41.0
AT5G59130 Arabidopsis thaliana HOM05D000015 ORTHO05D000270 1.2e-09 66.6 99 41.4
A06p20690 Brassica napus HOM05D000015 ORTHO05D000270 1.2e-09 66.6 100 40.0
Thhalv10012810m.g Eutrema salsugineum HOM05D000015 ORTHO05D000270 1.2e-09 66.6 92 47.8
Sp6g20880 Schrenkiella parvula HOM05D000015 ORTHO05D000270 1.2e-09 66.6 101 45.5
BcaC01g01879 Brassica carinata HOM05D000015 ORTHO05D000270 1.6e-09 66.2 100 40.0
Sc21g0006100 Simmondsia chinensis HOM05D000015 ORTHO05D000270 1.6e-09 66.2 100 40.0
CARHR285440 Cardamine hirsuta HOM05D000015 ORTHO05D000270 2.1e-09 65.9 100 39.0
GSVIVG01024856001 Vitis vinifera HOM05D000015 ORTHO05D000270 2.1e-09 65.9 74 48.6
Aa31LG4G15790 Aethionema arabicum HOM05D000015 ORTHO05D000270 2.7e-09 65.5 100 39.0
AL8G35120 Arabidopsis lyrata HOM05D000015 ORTHO05D000270 2.7e-09 65.5 94 47.9
Carub.0008s1947 Capsella rubella HOM05D000015 ORTHO05D000270 4.6e-09 64.7 94 43.6
THA.LOC104808549 Tarenaya hassleriana HOM05D000015 ORTHO05D000270 4.6e-09 64.7 99 43.4
BcaB01g04604 Brassica carinata HOM05D000015 ORTHO05D091847 6.0e-09 64.3 70 50.0
BcaC03g14034 Brassica carinata HOM05D000015 ORTHO05D000270 6.0e-09 64.3 101 42.6
C02p12750 Brassica napus HOM05D000015 ORTHO05D000270 6.0e-09 64.3 101 42.6
BolC2t07372H Brassica oleracea HOM05D000015 ORTHO05D000270 6.0e-09 64.3 101 42.6
Aa31sc23G500 Aethionema arabicum HOM05D000015 ORTHO05D000270 7.9e-09 63.9 106 40.6
AL8G26340 Arabidopsis lyrata HOM05D000015 ORTHO05D000270 7.9e-09 63.9 94 47.9
THA.LOC104799726 Tarenaya hassleriana HOM05D000015 ORTHO05D000270 7.9e-09 63.9 100 38.0
Thhalv10015631m.g Eutrema salsugineum HOM05D000015 ORTHO05D000270 1.3e-08 63.2 94 43.6
AL8G35140 Arabidopsis lyrata HOM05D000015 ORTHO05D000270 1.8e-08 62.8 94 42.6
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 1.8e-08 62.8 93 41.9
A02p07310 Brassica napus HOM05D000015 ORTHO05D000270 1.8e-08 62.8 101 41.6
C03p71010 Brassica napus HOM05D000015 ORTHO05D000270 1.8e-08 62.8 94 40.4
BolC3t19383H Brassica oleracea HOM05D000015 ORTHO05D000270 1.8e-08 62.8 94 40.4
BraA01t01957Z Brassica rapa HOM05D000015 ORTHO05D000270 1.8e-08 62.8 93 41.9
BraA02t05811Z Brassica rapa HOM05D000015 ORTHO05D000270 2.3e-08 62.4 101 41.6
Sp6g22300 Schrenkiella parvula HOM05D000015 ORTHO05D000270 2.3e-08 62.4 96 38.5
BcaB05g22454 Brassica carinata HOM05D000015 ORTHO05D000270 3.0e-08 62.0 91 46.2
BcaB05g22485 Brassica carinata HOM05D000015 ORTHO05D000270 3.0e-08 62.0 101 41.6
Carub.0008s1945 Capsella rubella HOM05D000015 ORTHO05D000270 3.9e-08 61.6 94 43.6
Hund18878 Selenicereus undatus HOM05D000015 ORTHO05D000270 3.9e-08 61.6 100 38.0
AL8G34670 Arabidopsis lyrata HOM05D000015 ORTHO05D000270 5.1e-08 61.2 94 45.7
COL.COLO4_18413 Corchorus olitorius HOM05D000015 ORTHO05D000270 5.1e-08 61.2 100 38.0
Carub.0003s2827 Capsella rubella HOM05D000015 ORTHO05D000270 6.7e-08 60.8 100 39.0
BcaC03g14069 Brassica carinata HOM05D000015 ORTHO05D000270 1.1e-07 60.1 91 44.0
BolC2t07417H Brassica oleracea HOM05D000015 ORTHO05D000270 1.1e-07 60.1 91 44.0
THA.LOC104799421 Tarenaya hassleriana HOM05D000015 ORTHO05D000270 1.1e-07 60.1 100 36.0
C02p13060 Brassica napus HOM05D000015 ORTHO05D000270 1.5e-07 59.7 92 44.6
BolC2t07421H Brassica oleracea HOM05D000015 ORTHO05D000270 1.5e-07 59.7 92 44.6
COL.COLO4_30416 Corchorus olitorius HOM05D000015 ORTHO05D000270 1.5e-07 59.7 101 37.6
CARHR053670 Cardamine hirsuta HOM05D000015 ORTHO05D000270 1.9e-07 59.3 93 43.0
Thhalv10012872m.g Eutrema salsugineum HOM05D000015 ORTHO05D000270 1.9e-07 59.3 93 38.7
QL01p028167 Quercus lobata HOM05D000015 ORTHO05D000270 1.9e-07 59.3 101 38.6
QL93p2008_0005 Quercus lobata HOM05D000015 ORTHO05D000270 1.9e-07 59.3 101 38.6
AT5G58840 Arabidopsis thaliana HOM05D000015 ORTHO05D000270 2.5e-07 58.9 93 41.9
BcaB08g36285 Brassica carinata HOM05D000015 ORTHO05D000270 2.5e-07 58.9 101 35.6
AUR62020065 Chenopodium quinoa HOM05D000015 ORTHO05D000270 2.5e-07 58.9 105 41.0
CARHR285460 Cardamine hirsuta HOM05D000015 ORTHO05D000270 4.3e-07 58.2 102 38.2
C02p13040 Brassica napus HOM05D000015 ORTHO05D000270 5.7e-07 57.8 87 43.7
Potri.009G038001 Populus trichocarpa HOM05D000015 ORTHO05D000270 5.7e-07 57.8 100 36.0
QL04p052352 Quercus lobata HOM05D000015 ORTHO05D000270 5.7e-07 57.8 101 36.6
TAR623G1709 Trochodendron aralioides HOM05D000015 ORTHO05D000270 5.7e-07 57.8 101 39.6
MD02G1289400 Malus domestica HOM05D000015 ORTHO05D000270 7.4e-07 57.4 100 36.0
RcHm_v2.0_Chr1g0323291 Rosa chinensis HOM05D000015 ORTHO05D000270 7.4e-07 57.4 100 38.0
Cpa.g.sc81.70 Carica papaya HOM05D000015 ORTHO05D000270 9.6e-07 57.0 101 31.7
Ciclev10027939m.g Citrus clementina HOM05D000015 ORTHO05D000270 9.6e-07 57.0 100 39.0
Gorai.009G095600 Gossypium raimondii HOM05D000015 ORTHO05D000270 9.6e-07 57.0 99 34.3
COL.COLO4_30415 Corchorus olitorius HOM05D000015 ORTHO05D000270 1.3e-06 56.6 100 37.0
COL.COLO4_30417 Corchorus olitorius HOM05D000015 ORTHO05D000270 1.3e-06 56.6 101 37.6
Gohir.A05G092200 Gossypium hirsutum HOM05D000015 ORTHO05D000270 1.3e-06 56.6 99 33.3
Gohir.D05G093000 Gossypium hirsutum HOM05D000015 ORTHO05D000270 1.3e-06 56.6 99 34.3
CANSAT54G2223 Cannabis sativa HOM05D000015 ORTHO05D000270 1.6e-06 56.2 101 35.6
THA.LOC104803013 Tarenaya hassleriana HOM05D000015 ORTHO05D000270 1.6e-06 56.2 100 39.0
AUR62020052 Chenopodium quinoa HOM05D000015 ORTHO05D000270 2.1e-06 55.8 102 36.3
Manes.01G167601 Manihot esculenta HOM05D000015 ORTHO05D000270 2.1e-06 55.8 101 33.7
QL04p053881 Quercus lobata HOM05D000015 ORTHO05D000270 2.1e-06 55.8 101 35.6
BcaC03g14071 Brassica carinata HOM05D000015 ORTHO05D000270 2.8e-06 55.5 91 42.9
BolC2t07419H Brassica oleracea HOM05D000015 ORTHO05D000270 2.8e-06 55.5 68 44.1
BolC2t07424H Brassica oleracea HOM05D000015 ORTHO05D000270 2.8e-06 55.5 91 42.9
AUR62001724 Chenopodium quinoa HOM05D000015 ORTHO05D000270 2.8e-06 55.5 103 38.8
COL.COLO4_30411 Corchorus olitorius HOM05D000015 ORTHO05D000270 2.8e-06 55.5 101 36.6
Cpa.g.sc81.78 Carica papaya HOM05D000015 ORTHO05D000270 3.7e-06 55.1 72 37.5
Lsat_1_v5_gn_4_7680 Lactuca sativa HOM05D000015 ORTHO05D000270 3.7e-06 55.1 102 31.4
Prupe.2G032800 Prunus persica HOM05D000015 ORTHO05D000270 3.7e-06 55.1 101 35.6
QL01p013075 Quercus lobata HOM05D000015 ORTHO05D000270 3.7e-06 55.1 102 33.3
CANSAT54G2439 Cannabis sativa HOM05D000015 ORTHO05D000270 4.8e-06 54.7 102 34.3
CARHR272770 Cardamine hirsuta HOM05D000015 ORTHO05D000270 4.8e-06 54.7 91 44.0
COL.COLO4_30414 Corchorus olitorius HOM05D000015 ORTHO05D000270 4.8e-06 54.7 102 37.3
FAN03G3473 Fragaria x ananassa HOM05D000015 ORTHO05D000270 4.8e-06 54.7 100 36.0
QL04p054390 Quercus lobata HOM05D000015 ORTHO05D000270 4.8e-06 54.7 102 36.3
A10p16330 Brassica napus HOM05D000015 ORTHO05D000270 8.2e-06 53.9 101 34.7
BraA10t43717Z Brassica rapa HOM05D000015 ORTHO05D000270 8.2e-06 53.9 101 34.7
Cc11_g05540 Coffea canephora HOM05D000015 ORTHO05D000270 8.2e-06 53.9 101 34.7
Manes.10G021800 Manihot esculenta HOM05D000015 ORTHO05D000270 8.2e-06 53.9 102 39.2


User provided reference genes

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